Wall clock time and date at job start Tue Mar 31 2020 22:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42908 * 113.99610 * 2 1 4 4 C 1.52999 * 109.46749 * 209.99985 * 3 2 1 5 5 C 1.53004 * 109.46877 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47422 * 59.99754 * 5 4 3 7 7 C 1.50700 * 109.46814 * 59.99874 * 6 5 4 8 8 O 1.21287 * 119.99843 * 357.21738 * 7 6 5 9 9 N 1.34774 * 120.00041 * 177.20477 * 7 6 5 10 10 C 1.46925 * 120.62732 * 355.37089 * 9 7 6 11 11 C 1.53197 * 108.77387 * 126.41229 * 10 9 7 12 12 C 1.53037 * 109.34282 * 54.61223 * 11 10 9 13 13 C 1.53038 * 109.54256 * 298.68804 * 12 11 10 14 14 C 1.46928 * 120.63096 * 175.38427 * 9 7 6 15 15 H 1.09005 * 109.57902 * 113.80556 * 14 9 7 16 16 C 1.52998 * 109.58512 * 353.38410 * 14 9 7 17 17 C 1.53008 * 109.46901 * 181.83387 * 16 14 9 18 18 N 1.46497 * 109.46981 * 175.48873 * 17 16 14 19 19 C 1.36939 * 119.99941 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99594 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00183 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99584 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00082 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46730 * 60.00311 * 23 21 19 25 25 H 1.48493 * 109.47197 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47266 * 300.00809 * 23 21 19 27 27 C 1.53001 * 109.46848 * 300.00277 * 6 5 4 28 28 C 1.53001 * 109.46793 * 90.00273 * 3 2 1 29 29 H 1.08998 * 109.47487 * 299.99658 * 1 2 3 30 30 H 1.08997 * 109.47657 * 60.00334 * 1 2 3 31 31 H 1.09001 * 109.47112 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47301 * 330.00251 * 3 2 1 33 33 H 1.08995 * 109.47325 * 60.00634 * 4 3 2 34 34 H 1.08998 * 109.47771 * 299.99849 * 4 3 2 35 35 H 1.09006 * 109.46667 * 299.99945 * 5 4 3 36 36 H 1.08997 * 109.47472 * 180.02562 * 5 4 3 37 37 H 1.08994 * 109.47306 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.58849 * 6.62071 * 10 9 7 39 39 H 1.09003 * 109.70101 * 246.26070 * 10 9 7 40 40 H 1.08998 * 109.49406 * 174.58406 * 11 10 9 41 41 H 1.08999 * 109.49238 * 294.64680 * 11 10 9 42 42 H 1.09001 * 109.45509 * 58.67347 * 12 11 10 43 43 H 1.08994 * 109.46275 * 178.62877 * 12 11 10 44 44 H 1.09004 * 109.46870 * 301.36722 * 13 12 11 45 45 H 1.08995 * 109.49866 * 181.28472 * 13 12 11 46 46 H 1.08997 * 109.47018 * 301.83148 * 16 14 9 47 47 H 1.08998 * 109.47715 * 61.83531 * 16 14 9 48 48 H 1.08996 * 109.46848 * 295.49079 * 17 16 14 49 49 H 1.08998 * 109.46642 * 55.49164 * 17 16 14 50 50 H 0.97001 * 119.99988 * 0.02562 * 18 17 16 51 51 H 0.96998 * 119.99419 * 179.97438 * 22 21 19 52 52 H 1.09005 * 109.46557 * 179.97438 * 27 6 5 53 53 H 1.08994 * 109.47426 * 299.99540 * 27 6 5 54 54 H 1.08999 * 109.47271 * 299.99372 * 28 3 2 55 55 H 1.08994 * 109.47216 * 59.99926 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.3588 1.2634 -0.7213 5 6 3.9813 2.6610 -0.7207 6 6 4.1888 3.1264 0.7220 7 6 5.1084 2.1666 1.4320 8 8 5.5136 1.1780 0.8580 9 7 5.4807 2.4069 2.7048 10 6 5.0813 3.6494 3.3797 11 6 4.3900 3.2933 4.6996 12 6 5.3117 2.3960 5.5286 13 6 5.5889 1.1003 4.7629 14 6 6.2939 1.4315 3.4438 15 1 7.2759 1.8569 3.6510 16 6 6.4490 0.1574 2.6110 17 6 7.2575 -0.8734 3.4016 18 7 7.3145 -2.1297 2.6504 19 6 7.9899 -3.2045 3.1640 20 1 8.4802 -3.1261 4.1231 21 6 8.0435 -4.3952 2.4524 22 7 7.4455 -4.4909 1.2837 23 14 8.9642 -5.8616 3.1533 24 1 8.3620 -6.2481 4.4546 25 1 8.8727 -7.0021 2.2067 26 1 10.3902 -5.5000 3.3558 27 6 2.8401 3.1685 1.4431 28 6 2.2176 1.7714 1.4425 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.3449 1.9994 -0.5138 33 1 3.2110 0.9315 -1.7489 34 1 4.0241 0.5695 -0.2075 35 1 3.3161 3.3552 -1.2343 36 1 4.9419 2.6312 -1.2349 37 1 4.6319 4.1223 0.7223 38 1 4.3917 4.2050 2.7442 39 1 5.9630 4.2577 3.5816 40 1 4.1746 4.2060 5.2552 41 1 3.4591 2.7656 4.4918 42 1 6.2518 2.9150 5.7154 43 1 4.8317 2.1613 6.4786 44 1 4.6470 0.5928 4.5545 45 1 6.2269 0.4521 5.3636 46 1 5.4640 -0.2502 2.3837 47 1 6.9685 0.3915 1.6819 48 1 8.2686 -0.4983 3.5597 49 1 6.7797 -1.0478 4.3657 50 1 6.8744 -2.2000 1.7888 51 1 7.4833 -5.3228 0.7864 52 1 2.9880 3.4997 2.4711 53 1 2.1749 3.8627 0.9296 54 1 1.2568 1.8015 1.9564 55 1 2.8828 1.0775 1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715214275.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:41 Heat of formation + Delta-G solvation = -91.721535 kcal Electronic energy + Delta-G solvation = -32340.069059 eV Core-core repulsion = 28376.274029 eV Total energy + Delta-G solvation = -3963.795030 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11681 -39.88511 -38.48279 -37.27803 -36.71948 -34.54793 -33.85086 -32.49188 -31.63989 -30.99728 -29.30013 -27.49739 -26.53564 -25.38784 -24.57932 -23.67976 -23.33081 -22.19016 -22.05973 -21.07818 -19.49419 -19.09505 -17.80676 -17.40066 -17.22953 -16.76687 -16.37251 -16.26920 -16.07828 -15.77450 -15.50084 -15.43517 -15.18096 -15.09484 -14.71838 -14.58639 -14.30774 -14.17860 -13.85449 -13.73536 -13.39834 -13.26982 -13.05108 -12.96501 -12.86179 -12.77999 -12.62678 -12.39985 -12.23835 -12.17014 -12.04420 -11.91884 -11.83782 -11.75989 -11.58232 -11.48734 -11.45529 -11.33630 -11.28228 -10.93195 -10.36489 -9.73891 -9.41846 -9.03308 -7.96241 -5.27730 1.42276 1.48290 1.54566 1.78304 2.08625 2.54114 2.86813 3.35509 3.47723 3.67321 3.73845 3.85408 3.88447 3.95953 4.05671 4.11942 4.14583 4.15750 4.25903 4.28591 4.35698 4.43677 4.46127 4.48521 4.49703 4.52436 4.59003 4.61987 4.70387 4.72376 4.78170 4.80640 4.82828 4.88099 4.91413 5.01035 5.05835 5.06999 5.13447 5.18396 5.20932 5.25087 5.26097 5.32942 5.39614 5.41416 5.47946 5.53106 5.59937 5.78377 6.24132 6.38555 6.61119 7.28267 7.42557 8.05399 8.30324 9.27887 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.003691 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.355040 B = 7583.523292 C = 9301.678318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.424 6.424 3 C 0.092 3.908 4 C -0.138 4.138 5 C -0.087 4.087 6 C -0.105 4.105 7 C 0.502 3.498 8 O -0.564 6.564 9 N -0.608 5.608 10 C 0.092 3.908 11 C -0.132 4.132 12 C -0.114 4.114 13 C -0.129 4.129 14 C 0.158 3.842 15 H 0.077 0.923 16 C -0.088 4.088 17 C 0.146 3.854 18 N -0.749 5.749 19 C -0.252 4.252 20 H 0.078 0.922 21 C -0.081 4.081 22 N -0.974 5.974 23 Si 0.983 3.017 24 H -0.274 1.274 25 H -0.293 1.293 26 H -0.274 1.274 27 C -0.107 4.107 28 C -0.139 4.139 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.034 0.966 47 H 0.063 0.937 48 H 0.016 0.984 49 H 0.024 0.976 50 H 0.368 0.632 51 H 0.252 0.748 52 H 0.097 0.903 53 H 0.110 0.890 54 H 0.077 0.923 55 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.101 28.424 3.819 32.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C 0.035 3.965 4 C -0.175 4.175 5 C -0.125 4.125 6 C -0.126 4.126 7 C 0.292 3.708 8 O -0.443 6.443 9 N -0.341 5.341 10 C -0.028 4.028 11 C -0.170 4.170 12 C -0.152 4.152 13 C -0.167 4.167 14 C 0.054 3.946 15 H 0.095 0.905 16 C -0.126 4.126 17 C 0.020 3.980 18 N -0.391 5.391 19 C -0.383 4.383 20 H 0.096 0.904 21 C -0.273 4.273 22 N -0.625 5.625 23 Si 0.811 3.189 24 H -0.200 1.200 25 H -0.219 1.219 26 H -0.200 1.200 27 C -0.144 4.144 28 C -0.177 4.177 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.150 0.850 38 H 0.136 0.864 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.053 0.947 47 H 0.081 0.919 48 H 0.034 0.966 49 H 0.042 0.958 50 H 0.199 0.801 51 H 0.060 0.940 52 H 0.115 0.885 53 H 0.128 0.872 54 H 0.096 0.904 55 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -14.678 27.678 3.663 31.543 hybrid contribution 0.378 -1.764 -0.284 1.826 sum -14.300 25.915 3.379 29.790 Atomic orbital electron populations 1.22931 0.79822 1.03255 1.01007 1.87982 1.21405 1.29790 1.95228 1.22270 0.94548 0.83891 0.95832 1.21845 0.96062 0.99614 0.99991 1.21264 1.01199 0.95159 0.94870 1.21513 0.95909 0.99611 0.95585 1.21403 0.80944 0.86785 0.81626 1.90790 1.56029 1.30648 1.66846 1.48267 1.52690 1.20795 1.12363 1.22288 1.01168 0.84656 0.94736 1.21951 0.98258 1.01111 0.95646 1.21509 1.00806 0.94442 0.98403 1.21985 1.00023 0.99238 0.95478 1.21040 0.94184 0.87980 0.91361 0.90460 1.21871 0.99021 0.93909 0.97801 1.21017 0.96663 0.86070 0.94282 1.42636 1.64048 1.09807 1.22563 1.19688 1.25128 0.91228 1.02300 0.90372 1.25747 1.02763 1.01305 0.97442 1.69890 1.50166 1.26939 1.15503 0.85076 0.78506 0.78158 0.77198 1.19973 1.21923 1.19958 1.21771 0.94009 0.96117 1.02464 1.21988 1.01201 0.97732 0.96744 0.92894 0.92468 0.89866 0.89690 0.92799 0.92415 0.87889 0.92416 0.85050 0.86441 0.89762 0.87543 0.92215 0.90639 0.90856 0.93741 0.91334 0.94682 0.91863 0.96633 0.95831 0.80081 0.93986 0.88501 0.87187 0.90448 0.95305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.82 113.37 1.23 1.74 16 2 O -0.42 -12.81 10.35 -148.98 -1.54 -14.35 16 3 C 0.09 2.18 2.61 30.59 0.08 2.26 16 4 C -0.14 -3.92 5.28 30.60 0.16 -3.76 16 5 C -0.09 -1.74 5.10 30.60 0.16 -1.59 16 6 C -0.11 -1.78 2.17 -11.54 -0.03 -1.81 16 7 C 0.50 13.83 5.41 87.66 0.47 14.30 16 8 O -0.56 -22.28 9.09 -3.05 -0.03 -22.31 16 9 N -0.61 -14.16 2.97 -795.01 -2.36 -16.52 16 10 C 0.09 1.13 5.52 86.36 0.48 1.60 16 11 C -0.13 -1.49 5.82 30.67 0.18 -1.31 16 12 C -0.11 -1.82 5.89 30.62 0.18 -1.64 16 13 C -0.13 -3.31 4.81 30.67 0.15 -3.16 16 14 C 0.16 4.64 3.03 44.97 0.14 4.77 16 15 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 16 C -0.09 -3.68 3.29 30.60 0.10 -3.58 16 17 C 0.15 6.94 6.01 86.38 0.52 7.46 16 18 N -0.75 -44.81 5.60 -343.45 -1.92 -46.73 16 19 C -0.25 -15.70 9.99 84.03 0.84 -14.86 16 20 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 21 C -0.08 -5.10 5.50 84.86 0.47 -4.63 16 22 N -0.97 -66.02 13.06 21.65 0.28 -65.74 16 23 Si 0.98 49.59 29.55 68.60 2.03 51.62 16 24 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.29 -14.75 7.11 99.48 0.71 -14.05 16 26 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 27 C -0.11 -1.32 5.01 30.58 0.15 -1.17 16 28 C -0.14 -2.92 5.32 30.58 0.16 -2.76 16 29 H 0.05 0.86 7.87 -2.39 -0.02 0.85 16 30 H 0.06 0.89 8.08 -2.39 -0.02 0.87 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 1.45 7.79 -2.39 -0.02 1.43 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 2.29 5.41 -2.39 -0.01 2.28 16 35 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.06 1.34 8.13 -2.39 -0.02 1.33 16 37 H 0.13 1.29 7.61 -2.39 -0.02 1.27 16 38 H 0.12 0.80 4.26 -2.39 -0.01 0.79 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.07 1.90 6.64 -2.39 -0.02 1.89 16 46 H 0.03 1.68 7.21 -2.39 -0.02 1.66 16 47 H 0.06 2.99 6.26 -2.39 -0.01 2.98 16 48 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.02 1.09 6.31 -2.39 -0.02 1.07 16 50 H 0.37 24.14 7.67 -92.71 -0.71 23.42 16 51 H 0.25 16.36 8.31 -92.71 -0.77 15.59 16 52 H 0.10 0.89 4.59 -2.38 -0.01 0.88 16 53 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 54 H 0.08 1.36 7.87 -2.39 -0.02 1.35 16 55 H 0.03 0.87 7.21 -2.39 -0.02 0.85 16 Total: -1.00 -86.65 399.80 2.05 -84.61 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: 0.16 Total: 37.55 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 5.44 Total: -8.13 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -4.00 Total: -128.99 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -1.57 Total: -36.66 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.03 Total: 51.62 kcal Total: -86.65 2.05 -84.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715214275.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.114 kcal (2) G-P(sol) polarization free energy of solvation -86.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds