Wall clock time and date at job start Tue Mar 31 2020 22:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00241 * 2 1 4 4 H 1.08998 * 109.46872 * 29.99542 * 3 2 1 5 5 C 1.50702 * 109.46636 * 269.99914 * 3 2 1 6 6 O 1.21279 * 120.00201 * 354.99498 * 5 3 2 7 7 N 1.34779 * 119.99614 * 175.00032 * 5 3 2 8 8 C 1.46500 * 119.99793 * 179.97438 * 7 5 3 9 9 H 1.09002 * 109.47092 * 34.99824 * 8 7 5 10 10 C 1.52997 * 109.47007 * 154.99772 * 8 7 5 11 11 N 1.46500 * 109.47520 * 304.99970 * 10 8 7 12 12 C 1.36935 * 120.00067 * 179.97438 * 11 10 8 13 13 H 1.07995 * 120.00414 * 0.02562 * 12 11 10 14 14 C 1.38818 * 119.99870 * 180.02562 * 12 11 10 15 15 N 1.31623 * 119.99958 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99988 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47505 * 59.99960 * 16 14 12 18 18 H 1.48508 * 109.47042 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47186 * 299.99677 * 16 14 12 20 20 C 1.53000 * 109.47023 * 274.99565 * 8 7 5 21 21 C 1.53002 * 109.47233 * 179.97438 * 20 8 7 22 22 C 1.52997 * 109.47415 * 180.02562 * 21 20 8 23 23 C 1.53002 * 109.46978 * 59.99902 * 22 21 20 24 24 C 1.52993 * 109.47066 * 300.00153 * 23 22 21 25 25 C 1.53000 * 109.47165 * 60.00395 * 24 23 22 26 26 C 1.53000 * 109.47237 * 149.99584 * 3 2 1 27 27 C 1.53781 * 113.61477 * 39.13710 * 26 3 2 28 28 C 1.53947 * 87.02025 * 220.04731 * 27 26 3 29 29 C 1.53777 * 113.61383 * 301.52832 * 26 3 2 30 30 H 1.09009 * 109.47241 * 300.00451 * 1 2 3 31 31 H 1.09003 * 109.47362 * 60.00073 * 1 2 3 32 32 H 1.08998 * 109.47482 * 179.97438 * 1 2 3 33 33 H 0.97004 * 119.99983 * 359.97438 * 7 5 3 34 34 H 1.09004 * 109.47346 * 65.00116 * 10 8 7 35 35 H 1.09002 * 109.47196 * 184.99891 * 10 8 7 36 36 H 0.96995 * 119.99638 * 359.97438 * 11 10 8 37 37 H 0.96992 * 120.00256 * 180.02562 * 15 14 12 38 38 H 1.08992 * 109.47399 * 300.00063 * 20 8 7 39 39 H 1.09002 * 109.47075 * 300.00932 * 21 20 8 40 40 H 1.09000 * 109.46986 * 60.00203 * 21 20 8 41 41 H 1.09002 * 109.47045 * 300.00068 * 22 21 20 42 42 H 1.09001 * 109.46922 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.46698 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.46838 * 60.00684 * 23 22 21 45 45 H 1.09001 * 109.47730 * 299.99430 * 24 23 22 46 46 H 1.09004 * 109.46672 * 179.97438 * 24 23 22 47 47 H 1.09001 * 109.46741 * 179.97438 * 25 24 23 48 48 H 1.09002 * 109.47398 * 59.99709 * 25 24 23 49 49 H 1.09005 * 112.84472 * 170.33103 * 26 3 2 50 50 H 1.09009 * 113.61343 * 334.56673 * 27 26 3 51 51 H 1.08999 * 113.61320 * 105.46246 * 27 26 3 52 52 H 1.09010 * 113.53587 * 270.81253 * 28 27 26 53 53 H 1.08994 * 113.74403 * 139.94328 * 28 27 26 54 54 H 1.09002 * 113.61142 * 254.52266 * 29 26 3 55 55 H 1.08997 * 113.61593 * 25.43705 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2146 1.7642 -1.4209 6 8 1.9792 1.0104 -2.3413 7 7 2.6589 3.0123 -1.6687 8 6 2.8581 3.4581 -3.0499 9 1 2.0970 3.0110 -3.6893 10 6 2.7473 4.9827 -3.1146 11 7 1.4655 5.4040 -2.5440 12 6 1.1425 6.7337 -2.4934 13 1 1.8325 7.4719 -2.8745 14 6 -0.0719 7.1329 -1.9521 15 7 -0.9127 6.2332 -1.4871 16 14 -0.5129 8.9467 -1.8837 17 1 -0.5333 9.5035 -3.2602 18 1 -1.8535 9.1072 -1.2654 19 1 0.4973 9.6714 -1.0716 20 6 4.2453 3.0268 -3.5300 21 6 4.4531 3.4918 -4.9728 22 6 5.8400 3.0599 -5.4531 23 6 5.9504 1.5353 -5.3878 24 6 5.7426 1.0703 -3.9452 25 6 4.3557 1.5021 -3.4648 26 6 3.3589 1.2632 0.7213 27 6 4.1772 -0.0043 0.4238 28 6 4.5677 -0.0047 1.9129 29 6 3.2649 0.7694 2.1746 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.8469 3.6153 -0.9324 34 1 3.5627 5.4308 -2.5466 35 1 2.8068 5.3076 -4.1534 36 1 0.8456 4.7409 -2.2020 37 1 -1.7613 6.5120 -1.1093 38 1 5.0064 3.4738 -2.8906 39 1 3.6919 3.0444 -5.6119 40 1 4.3740 4.5779 -5.0193 41 1 6.6014 3.5070 -4.8140 42 1 5.9881 3.3917 -6.4808 43 1 6.9386 1.2277 -5.7296 44 1 5.1890 1.0882 -6.0270 45 1 6.5041 1.5173 -3.3060 46 1 5.8209 -0.0160 -3.8988 47 1 4.2075 1.1704 -2.4372 48 1 3.5943 1.0550 -4.1040 49 1 3.9276 2.1864 0.6097 50 1 3.5673 -0.8594 0.1321 51 1 5.0176 0.1665 -0.2490 52 1 5.4683 0.5711 2.1269 53 1 4.5834 -0.9975 2.3622 54 1 3.3701 1.5640 2.9134 55 1 2.4052 0.1263 2.3626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715398412.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:11 Heat of formation + Delta-G solvation = -93.341738 kcal Electronic energy + Delta-G solvation = -32150.351436 eV Core-core repulsion = 28186.486149 eV Total energy + Delta-G solvation = -3963.865287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.66115 -40.14430 -38.86240 -37.79048 -37.09738 -35.29927 -33.26014 -32.21866 -31.57093 -30.45546 -28.49784 -27.20655 -26.44560 -25.65488 -24.68087 -23.71949 -22.96023 -21.87211 -21.31903 -20.60768 -20.21116 -19.27140 -18.36012 -17.78352 -17.35296 -16.83072 -16.67079 -16.40596 -15.99432 -15.67163 -15.37608 -15.22325 -15.01347 -14.96580 -14.82349 -14.61978 -14.51347 -14.05325 -13.75810 -13.36503 -13.24745 -13.17003 -13.07222 -12.88538 -12.84152 -12.74265 -12.64872 -12.44011 -12.36628 -12.12102 -11.98438 -11.85019 -11.78207 -11.58341 -11.47488 -11.36630 -11.25616 -11.09876 -11.05198 -10.96302 -10.78177 -10.14511 -9.84350 -9.00542 -7.94244 -5.23527 1.48343 1.50657 1.56601 1.67749 2.13230 2.56097 2.80352 3.39927 3.52669 3.60231 3.73337 3.78456 3.85336 3.89020 4.00424 4.01579 4.11388 4.17075 4.25379 4.29482 4.34416 4.46929 4.48743 4.51178 4.55914 4.60146 4.66239 4.69206 4.74023 4.76901 4.79043 4.81173 4.92352 4.94065 5.01162 5.03101 5.13806 5.15093 5.16189 5.21982 5.29944 5.31817 5.34499 5.35840 5.43546 5.48579 5.52156 5.60091 5.66405 5.69910 6.00525 6.26281 6.63885 7.32820 7.33830 8.06947 8.31324 9.28631 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007620 B = 0.004502 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3673.660747 B = 6217.411149 C = 8803.860857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.084 3.916 4 H 0.089 0.911 5 C 0.494 3.506 6 O -0.563 6.563 7 N -0.704 5.704 8 C 0.155 3.845 9 H 0.050 0.950 10 C 0.148 3.852 11 N -0.742 5.742 12 C -0.244 4.244 13 H 0.078 0.922 14 C -0.071 4.071 15 N -0.968 5.968 16 Si 0.971 3.029 17 H -0.281 1.281 18 H -0.298 1.298 19 H -0.275 1.275 20 C -0.080 4.080 21 C -0.115 4.115 22 C -0.111 4.111 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.094 4.094 26 C -0.109 4.109 27 C -0.128 4.128 28 C -0.130 4.130 29 C -0.125 4.125 30 H 0.057 0.943 31 H 0.021 0.979 32 H 0.106 0.894 33 H 0.407 0.593 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.373 0.627 37 H 0.250 0.750 38 H 0.082 0.918 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.050 0.950 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.049 0.951 48 H 0.037 0.963 49 H 0.114 0.886 50 H 0.074 0.926 51 H 0.061 0.939 52 H 0.092 0.908 53 H 0.073 0.927 54 H 0.080 0.920 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.093 -12.106 3.532 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.282 6.282 3 C 0.022 3.978 4 H 0.107 0.893 5 C 0.280 3.720 6 O -0.442 6.442 7 N -0.357 5.357 8 C 0.049 3.951 9 H 0.069 0.931 10 C 0.021 3.979 11 N -0.385 5.385 12 C -0.375 4.375 13 H 0.096 0.904 14 C -0.264 4.264 15 N -0.619 5.619 16 Si 0.801 3.199 17 H -0.208 1.208 18 H -0.225 1.225 19 H -0.201 1.201 20 C -0.100 4.100 21 C -0.153 4.153 22 C -0.148 4.148 23 C -0.155 4.155 24 C -0.152 4.152 25 C -0.132 4.132 26 C -0.127 4.127 27 C -0.166 4.166 28 C -0.167 4.167 29 C -0.162 4.162 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.124 0.876 33 H 0.242 0.758 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.205 0.795 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.068 0.932 48 H 0.056 0.944 49 H 0.132 0.868 50 H 0.093 0.907 51 H 0.080 0.920 52 H 0.110 0.890 53 H 0.092 0.908 54 H 0.099 0.901 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.053 -12.645 2.848 19.864 hybrid contribution -1.521 1.249 0.171 1.976 sum 13.531 -11.396 3.019 17.947 Atomic orbital electron populations 1.22942 0.80142 1.03936 0.99886 1.87889 1.20552 1.25381 1.94337 1.21947 0.98210 0.86452 0.91185 0.89316 1.21599 0.76064 0.81665 0.92631 1.90661 1.51648 1.54769 1.47083 1.45935 1.66888 1.13934 1.08896 1.21076 0.97393 0.93736 0.82864 0.93149 1.21127 0.88244 0.91375 0.97145 1.42509 1.17942 1.04572 1.73458 1.19582 1.00610 0.85171 1.32176 0.90401 1.25513 0.97236 1.01463 1.02146 1.69814 1.10331 1.33805 1.47902 0.85247 0.76685 0.80333 0.77676 1.20759 1.22475 1.20073 1.21421 0.94946 0.96242 0.97343 1.21608 0.98052 1.00915 0.94742 1.21484 0.96066 0.95723 1.01564 1.21530 1.01708 0.95951 0.96272 1.21530 0.96398 1.00283 0.96973 1.21461 0.96831 0.94447 1.00462 1.22789 0.92309 1.00434 0.97183 1.22799 0.98809 0.97352 0.97633 1.22789 0.97672 1.01102 0.95135 1.22868 0.98832 1.00216 0.94296 0.92397 0.96051 0.87585 0.75800 0.94350 0.94504 0.79501 0.94144 0.89993 0.93346 0.91382 0.91102 0.91104 0.90657 0.93136 0.91297 0.92401 0.93201 0.94426 0.86839 0.90703 0.91976 0.88996 0.90810 0.90135 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.81 113.37 1.23 1.93 16 2 O -0.36 -10.54 7.99 -129.99 -1.04 -11.58 16 3 C 0.08 2.31 2.53 29.85 0.08 2.39 16 4 H 0.09 2.42 7.79 -2.39 -0.02 2.40 16 5 C 0.49 16.51 5.46 87.66 0.48 16.99 16 6 O -0.56 -22.63 13.63 15.97 0.22 -22.41 16 7 N -0.70 -22.47 4.34 -442.53 -1.92 -24.39 16 8 C 0.15 5.22 1.99 44.99 0.09 5.31 16 9 H 0.05 2.06 7.58 -2.39 -0.02 2.04 16 10 C 0.15 5.59 5.31 86.38 0.46 6.05 16 11 N -0.74 -36.33 5.43 -343.45 -1.87 -38.20 16 12 C -0.24 -13.14 9.99 84.04 0.84 -12.30 16 13 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 14 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 15 N -0.97 -58.14 13.06 21.65 0.28 -57.86 16 16 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 18 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 C -0.08 -2.15 1.96 -10.79 -0.02 -2.18 16 21 C -0.12 -2.87 4.85 30.59 0.15 -2.72 16 22 C -0.11 -2.18 5.92 30.59 0.18 -2.00 16 23 C -0.12 -2.31 5.92 30.59 0.18 -2.13 16 24 C -0.11 -2.50 5.92 30.59 0.18 -2.32 16 25 C -0.09 -2.65 3.73 30.59 0.11 -2.53 16 26 C -0.11 -2.34 3.54 -10.27 -0.04 -2.37 16 27 C -0.13 -2.75 7.48 31.18 0.23 -2.52 16 28 C -0.13 -2.11 8.09 31.18 0.25 -1.86 16 29 C -0.12 -2.24 7.54 31.12 0.23 -2.00 16 30 H 0.06 1.30 8.09 -2.38 -0.02 1.28 16 31 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.41 12.11 8.47 -92.71 -0.78 11.33 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.04 1.41 6.71 -2.39 -0.02 1.39 16 36 H 0.37 19.92 7.33 -92.71 -0.68 19.24 16 37 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.71 6.55 -2.39 -0.02 1.69 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 46 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.05 1.52 5.77 -2.39 -0.01 1.50 16 48 H 0.04 1.27 7.53 -2.39 -0.02 1.26 16 49 H 0.11 2.21 7.98 -2.38 -0.02 2.19 16 50 H 0.07 1.91 7.03 -2.38 -0.02 1.89 16 51 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 52 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 53 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 54 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 55 H 0.08 1.56 7.72 -2.39 -0.02 1.55 16 Total: -1.00 -66.80 418.68 2.20 -64.60 By element: Atomic # 1 Polarization: 49.07 SS G_CDS: -0.60 Total: 48.47 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 5.10 Total: -5.77 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -3.50 Total: -120.45 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.82 Total: -34.00 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -66.80 2.20 -64.60 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715398412.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.746 kcal (2) G-P(sol) polarization free energy of solvation -66.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds