Wall clock time and date at job start Tue Mar 31 2020 22:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00046 * 2 1 4 4 H 1.08998 * 109.47368 * 29.99881 * 3 2 1 5 5 C 1.50698 * 109.47176 * 149.99941 * 3 2 1 6 6 O 1.21285 * 120.00375 * 4.99707 * 5 3 2 7 7 N 1.34783 * 120.00276 * 184.99703 * 5 3 2 8 8 C 1.46498 * 120.00018 * 179.97438 * 7 5 3 9 9 H 1.09000 * 109.47136 * 325.00038 * 8 7 5 10 10 C 1.53006 * 109.46726 * 205.00037 * 8 7 5 11 11 N 1.46504 * 109.46883 * 55.00397 * 10 8 7 12 12 C 1.36936 * 119.99477 * 180.02562 * 11 10 8 13 13 H 1.08005 * 120.00404 * 359.97438 * 12 11 10 14 14 C 1.38814 * 119.99891 * 179.97438 * 12 11 10 15 15 N 1.31625 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00093 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47259 * 89.99741 * 16 14 12 18 18 H 1.48498 * 109.47318 * 209.99684 * 16 14 12 19 19 H 1.48498 * 109.47493 * 329.99764 * 16 14 12 20 20 C 1.52996 * 109.47308 * 85.00189 * 8 7 5 21 21 C 1.53000 * 109.46955 * 59.99558 * 20 8 7 22 22 C 1.53005 * 109.47145 * 179.97438 * 21 20 8 23 23 C 1.52996 * 109.46840 * 60.00369 * 22 21 20 24 24 C 1.53003 * 109.47304 * 299.99756 * 23 22 21 25 25 C 1.52996 * 109.46951 * 299.99975 * 20 8 7 26 26 C 1.53004 * 109.47128 * 269.99440 * 3 2 1 27 27 C 1.53780 * 113.61298 * 157.49420 * 26 3 2 28 28 C 1.53781 * 87.08127 * 220.02140 * 27 26 3 29 29 C 1.53777 * 87.07948 * 25.43706 * 28 27 26 30 30 H 1.09003 * 109.47298 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47238 * 300.00383 * 1 2 3 32 32 H 1.08998 * 109.46638 * 60.00466 * 1 2 3 33 33 H 0.96995 * 119.99419 * 359.97438 * 7 5 3 34 34 H 1.09001 * 109.47002 * 174.99895 * 10 8 7 35 35 H 1.08993 * 109.46955 * 295.00332 * 10 8 7 36 36 H 0.96992 * 119.99966 * 359.97438 * 11 10 8 37 37 H 0.96993 * 120.00031 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.47474 * 179.97438 * 20 8 7 39 39 H 1.08996 * 109.47552 * 300.00026 * 21 20 8 40 40 H 1.09002 * 109.47044 * 60.00129 * 21 20 8 41 41 H 1.08997 * 109.47396 * 300.00165 * 22 21 20 42 42 H 1.09006 * 109.47013 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.47140 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.47293 * 59.99733 * 23 22 21 45 45 H 1.09001 * 109.46679 * 300.00652 * 24 23 22 46 46 H 1.08992 * 109.47399 * 180.02562 * 24 23 22 47 47 H 1.08993 * 109.47243 * 299.99585 * 25 20 8 48 48 H 1.08996 * 109.47312 * 60.00123 * 25 20 8 49 49 H 1.09002 * 112.85215 * 288.80925 * 26 3 2 50 50 H 1.08994 * 113.61700 * 334.57211 * 27 26 3 51 51 H 1.09005 * 113.60826 * 105.47640 * 27 26 3 52 52 H 1.08994 * 113.61677 * 270.88505 * 28 27 26 53 53 H 1.09004 * 113.68681 * 139.99313 * 28 27 26 54 54 H 1.09001 * 113.61237 * 220.01619 * 29 28 27 55 55 H 1.09003 * 113.61651 * 89.11547 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 3.3386 1.2638 0.7104 6 8 3.7897 0.2044 1.0915 7 7 4.0255 2.4040 0.9224 8 6 5.3166 2.3636 1.6135 9 1 5.2952 1.5872 2.3783 10 6 5.5862 3.7190 2.2701 11 7 4.4653 4.0687 3.1462 12 6 4.4836 5.2467 3.8443 13 1 5.3246 5.9177 3.7493 14 6 3.4214 5.5783 4.6740 15 7 2.3962 4.7608 4.7894 16 14 3.4467 7.1848 5.6268 17 1 2.8193 8.2547 4.8101 18 1 2.6895 7.0210 6.8937 19 1 4.8513 7.5560 5.9342 20 6 6.4254 2.0558 0.6052 21 6 6.4554 3.1455 -0.4683 22 6 7.5647 2.8381 -1.4763 23 6 7.2957 1.4826 -2.1329 24 6 7.2657 0.3928 -1.0595 25 6 6.1558 0.7004 -0.0514 26 6 2.2178 1.7713 -1.4425 27 6 2.3078 3.2994 -1.5894 28 6 1.4688 3.1470 -2.8691 29 6 0.9164 1.8484 -2.2582 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 3.6649 3.2511 0.6173 34 1 6.5025 3.6623 2.8576 35 1 5.6957 4.4810 1.4985 36 1 3.7099 3.4663 3.2312 37 1 1.6538 4.9927 5.3689 38 1 7.3861 2.0262 1.1193 39 1 5.4948 3.1755 -0.9825 40 1 6.6474 4.1111 -0.0005 41 1 8.5251 2.8084 -0.9618 42 1 7.5857 3.6143 -2.2414 43 1 8.0861 1.2634 -2.8507 44 1 6.3352 1.5124 -2.6474 45 1 8.2262 0.3632 -0.5449 46 1 7.0745 -0.5729 -1.5273 47 1 6.1344 -0.0759 0.7134 48 1 5.1952 0.7304 -0.5656 49 1 3.0197 1.2345 -1.9495 50 1 1.7981 3.8451 -0.7955 51 1 3.3197 3.6616 -1.7713 52 1 2.0663 2.9876 -3.7667 53 1 0.7159 3.9253 -2.9945 54 1 0.8049 1.0392 -2.9799 55 1 0.0262 1.9975 -1.6470 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715398413.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:16 Heat of formation + Delta-G solvation = -88.396436 kcal Electronic energy + Delta-G solvation = -32564.358289 eV Core-core repulsion = 28600.707446 eV Total energy + Delta-G solvation = -3963.650843 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.75047 -40.23458 -38.86516 -37.82498 -37.09525 -35.27564 -33.17552 -32.18139 -31.56587 -30.41668 -28.53292 -27.36230 -26.46624 -25.66286 -24.59089 -23.94043 -22.96165 -21.92003 -21.17252 -20.58052 -20.24373 -19.24683 -18.45409 -17.73909 -17.22997 -16.91011 -16.67192 -16.29460 -16.06486 -15.79725 -15.45244 -15.25092 -15.06113 -14.84816 -14.76084 -14.66613 -14.25083 -14.16326 -13.81608 -13.45189 -13.44203 -13.21052 -12.97408 -12.93430 -12.82781 -12.76383 -12.60640 -12.44735 -12.22128 -12.05514 -11.96915 -11.90422 -11.87310 -11.74861 -11.40611 -11.32374 -11.24393 -11.11931 -10.96382 -10.84781 -10.69445 -10.17770 -9.84351 -8.98599 -7.92958 -5.22150 1.48905 1.50212 1.58407 1.66746 1.96974 2.56855 2.97778 3.41278 3.49226 3.64119 3.66271 3.78554 3.80521 3.89873 3.94463 3.97114 4.09859 4.16821 4.19723 4.29293 4.36515 4.49300 4.50300 4.52083 4.53997 4.60283 4.68268 4.70778 4.75924 4.76538 4.82944 4.83282 4.88003 4.91876 4.93031 5.07020 5.08080 5.11553 5.17202 5.25770 5.26780 5.30034 5.35180 5.36553 5.44333 5.52621 5.54489 5.55015 5.62197 5.69476 6.07092 6.27532 6.63768 7.32267 7.35040 8.08328 8.32555 9.30136 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008158 B = 0.004554 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3431.212780 B = 6147.311318 C = 7950.482299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.385 6.385 3 C 0.085 3.915 4 H 0.086 0.914 5 C 0.512 3.488 6 O -0.564 6.564 7 N -0.694 5.694 8 C 0.152 3.848 9 H 0.052 0.948 10 C 0.146 3.854 11 N -0.742 5.742 12 C -0.240 4.240 13 H 0.079 0.921 14 C -0.072 4.072 15 N -0.968 5.968 16 Si 0.971 3.029 17 H -0.285 1.285 18 H -0.301 1.301 19 H -0.271 1.271 20 C -0.084 4.084 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.117 4.117 25 C -0.096 4.096 26 C -0.123 4.123 27 C -0.142 4.142 28 C -0.127 4.127 29 C -0.131 4.131 30 H 0.099 0.901 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.407 0.593 34 H 0.032 0.968 35 H 0.049 0.951 36 H 0.373 0.627 37 H 0.249 0.751 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.037 0.963 48 H 0.048 0.952 49 H 0.090 0.910 50 H 0.081 0.919 51 H 0.077 0.923 52 H 0.090 0.910 53 H 0.079 0.921 54 H 0.077 0.923 55 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.051 -4.563 -20.199 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.303 6.303 3 C 0.023 3.977 4 H 0.104 0.896 5 C 0.299 3.701 6 O -0.442 6.442 7 N -0.347 5.347 8 C 0.047 3.953 9 H 0.070 0.930 10 C 0.019 3.981 11 N -0.385 5.385 12 C -0.372 4.372 13 H 0.097 0.903 14 C -0.265 4.265 15 N -0.619 5.619 16 Si 0.801 3.199 17 H -0.212 1.212 18 H -0.228 1.228 19 H -0.196 1.196 20 C -0.104 4.104 21 C -0.148 4.148 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.154 4.154 25 C -0.133 4.133 26 C -0.142 4.142 27 C -0.179 4.179 28 C -0.164 4.164 29 C -0.168 4.168 30 H 0.118 0.882 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.243 0.757 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.205 0.795 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.067 0.933 49 H 0.109 0.891 50 H 0.100 0.900 51 H 0.095 0.905 52 H 0.109 0.891 53 H 0.098 0.902 54 H 0.096 0.904 55 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.578 -5.328 -19.863 20.726 hybrid contribution -0.906 0.810 1.293 1.774 sum 1.672 -4.518 -18.570 19.184 Atomic orbital electron populations 1.23265 0.79252 1.04233 1.01356 1.87953 1.21439 1.25822 1.95096 1.22030 0.92326 0.86540 0.96767 0.89585 1.20726 0.86509 0.83871 0.79028 1.90667 1.70298 1.31208 1.52074 1.45764 1.21126 1.09229 1.58556 1.21103 0.83330 0.97226 0.93605 0.92987 1.21167 0.90799 0.93498 0.92620 1.42520 1.21120 1.22228 1.52583 1.19617 1.02591 0.96708 1.18294 0.90314 1.25511 0.96966 1.01822 1.02161 1.69830 1.09787 1.38754 1.43554 0.85175 0.77521 0.79691 0.77553 1.21153 1.22793 1.19570 1.21437 0.97248 0.95964 0.95740 1.21603 0.99617 0.97540 0.96068 1.21502 0.98320 0.97080 0.98136 1.21494 1.01669 0.94572 0.97298 1.21558 0.98430 0.98635 0.96806 1.21471 0.98411 0.95668 0.97784 1.22969 1.00881 0.97619 0.92702 1.23051 1.01790 0.93639 0.99439 1.22742 0.99415 0.97487 0.96805 1.23005 0.95935 0.98933 0.98902 0.88215 0.94218 0.90967 0.75725 0.95011 0.93336 0.79531 0.94196 0.90160 0.92035 0.91452 0.91738 0.90883 0.90949 0.92607 0.91772 0.92504 0.94439 0.93338 0.89121 0.90003 0.90457 0.89127 0.90230 0.90425 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 10.57 113.37 1.20 1.52 16 2 O -0.38 -11.85 9.84 -129.99 -1.28 -13.12 16 3 C 0.08 2.43 2.46 29.85 0.07 2.50 16 4 H 0.09 2.43 7.59 -2.39 -0.02 2.41 16 5 C 0.51 17.90 5.54 87.66 0.49 18.38 16 6 O -0.56 -23.91 13.63 15.94 0.22 -23.69 16 7 N -0.69 -22.40 3.55 -442.52 -1.57 -23.97 16 8 C 0.15 5.18 2.16 44.99 0.10 5.28 16 9 H 0.05 2.13 7.58 -2.39 -0.02 2.12 16 10 C 0.15 5.50 5.60 86.38 0.48 5.98 16 11 N -0.74 -36.27 5.43 -343.43 -1.87 -38.13 16 12 C -0.24 -12.92 9.99 84.03 0.84 -12.08 16 13 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 14 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 15 N -0.97 -58.39 13.06 21.65 0.28 -58.11 16 16 Si 0.97 45.18 29.55 68.60 2.03 47.21 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 C -0.08 -2.28 2.07 -10.80 -0.02 -2.30 16 21 C -0.11 -2.48 4.70 30.60 0.14 -2.34 16 22 C -0.11 -2.06 5.92 30.59 0.18 -1.88 16 23 C -0.11 -2.08 5.92 30.59 0.18 -1.90 16 24 C -0.12 -2.60 5.93 30.62 0.18 -2.42 16 25 C -0.10 -2.73 3.73 30.61 0.11 -2.61 16 26 C -0.12 -2.64 3.33 -10.27 -0.03 -2.68 16 27 C -0.14 -2.64 6.28 31.12 0.20 -2.44 16 28 C -0.13 -1.87 8.08 31.12 0.25 -1.62 16 29 C -0.13 -2.16 6.18 31.12 0.19 -1.97 16 30 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.04 0.89 8.08 -2.39 -0.02 0.87 16 32 H 0.07 1.22 4.95 -2.39 -0.01 1.21 16 33 H 0.41 12.34 7.27 -92.71 -0.67 11.66 16 34 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.69 6.17 -2.39 -0.01 1.67 16 36 H 0.37 19.99 7.33 -92.71 -0.68 19.31 16 37 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.06 1.38 7.47 -2.39 -0.02 1.36 16 40 H 0.07 1.54 6.32 -2.39 -0.02 1.52 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.04 1.28 7.53 -2.39 -0.02 1.26 16 48 H 0.05 1.51 5.77 -2.39 -0.01 1.50 16 49 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.08 1.66 7.96 -2.39 -0.02 1.64 16 51 H 0.08 1.39 8.01 -2.38 -0.02 1.37 16 52 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 54 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 55 H 0.09 1.39 6.33 -2.39 -0.02 1.38 16 Total: -1.00 -68.69 410.69 2.36 -66.33 By element: Atomic # 1 Polarization: 48.11 SS G_CDS: -0.48 Total: 47.63 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 5.03 Total: -4.15 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -3.16 Total: -120.21 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.06 Total: -36.81 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -68.69 2.36 -66.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715398413.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.069 kcal (2) G-P(sol) polarization free energy of solvation -68.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds