Wall clock time and date at job start Tue Mar 31 2020 22:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99875 * 2 1 4 4 H 1.09000 * 110.05570 * 331.41988 * 3 2 1 5 5 C 1.54270 * 110.03010 * 92.83696 * 3 2 1 6 6 C 1.54887 * 104.19257 * 142.89258 * 5 3 2 7 7 C 1.54888 * 102.75197 * 322.05530 * 6 5 3 8 8 C 1.53872 * 110.03037 * 210.00496 * 3 2 1 9 9 H 1.08995 * 110.07373 * 121.41114 * 8 3 2 10 10 C 1.50701 * 110.03502 * 359.97438 * 8 3 2 11 11 O 1.21277 * 120.00302 * 277.17176 * 10 8 3 12 12 N 1.34776 * 119.99592 * 97.16670 * 10 8 3 13 13 C 1.46932 * 120.63231 * 174.31826 * 12 10 8 14 14 C 1.53193 * 108.77510 * 233.59266 * 13 12 10 15 15 C 1.53039 * 109.31209 * 305.36248 * 14 13 12 16 16 C 1.53000 * 109.45976 * 181.38850 * 15 14 13 17 17 C 1.53002 * 109.47227 * 174.96937 * 16 15 14 18 18 N 1.46497 * 109.47152 * 180.02562 * 17 16 15 19 19 C 1.46493 * 120.00075 * 89.99976 * 18 17 16 20 20 C 1.36940 * 119.99845 * 270.00612 * 18 17 16 21 21 H 1.07995 * 120.00195 * 334.89352 * 20 18 17 22 22 C 1.38813 * 120.00215 * 154.90146 * 20 18 17 23 23 N 1.31623 * 119.99489 * 4.71062 * 22 20 18 24 24 Si 1.86794 * 120.00302 * 184.71460 * 22 20 18 25 25 H 1.48511 * 109.47087 * 89.99604 * 24 22 20 26 26 H 1.48495 * 109.47459 * 209.99732 * 24 22 20 27 27 H 1.48499 * 109.47243 * 329.99832 * 24 22 20 28 28 C 1.53039 * 109.52993 * 61.37517 * 15 14 13 29 29 C 1.46928 * 120.63182 * 354.30068 * 12 10 8 30 30 H 1.09003 * 109.47019 * 300.00146 * 1 2 3 31 31 H 1.09000 * 109.47402 * 59.99743 * 1 2 3 32 32 H 1.08995 * 109.47156 * 179.97438 * 1 2 3 33 33 H 1.08992 * 110.48373 * 24.21377 * 5 3 2 34 34 H 1.08998 * 110.48473 * 261.57049 * 5 3 2 35 35 H 1.08996 * 110.75411 * 203.73838 * 6 5 3 36 36 H 1.09003 * 110.75207 * 80.37554 * 6 5 3 37 37 H 1.08999 * 110.48964 * 279.26846 * 7 6 5 38 38 H 1.08999 * 110.48765 * 156.61826 * 7 6 5 39 39 H 1.09000 * 109.58616 * 113.80268 * 13 12 10 40 40 H 1.08998 * 109.70028 * 353.44828 * 13 12 10 41 41 H 1.09001 * 109.49167 * 185.41627 * 14 13 12 42 42 H 1.08994 * 109.50013 * 65.31579 * 14 13 12 43 43 H 1.09004 * 109.46129 * 301.36082 * 15 14 13 44 44 H 1.09000 * 109.46760 * 54.97387 * 16 15 14 45 45 H 1.08994 * 109.47051 * 294.97554 * 16 15 14 46 46 H 1.09003 * 109.46527 * 60.00152 * 17 16 15 47 47 H 1.08993 * 109.46875 * 300.00383 * 17 16 15 48 48 H 1.08997 * 109.47464 * 264.86122 * 19 18 17 49 49 H 1.08998 * 109.47320 * 144.86201 * 19 18 17 50 50 H 1.09003 * 109.47058 * 24.86425 * 19 18 17 51 51 H 0.97008 * 119.99725 * 180.02562 * 23 22 20 52 52 H 1.09004 * 109.49594 * 58.57718 * 28 15 14 53 53 H 1.08993 * 109.49977 * 178.67748 * 28 15 14 54 54 H 1.08997 * 109.58973 * 246.19576 * 29 12 10 55 55 H 1.08999 * 109.58643 * 6.48633 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3409 2.0127 -0.4898 5 6 2.2907 1.7591 1.4476 6 6 3.6254 2.5388 1.3495 7 6 4.4267 1.7155 0.3106 8 6 3.3683 1.2778 -0.7229 9 1 3.3586 1.9711 -1.5639 10 6 3.6669 -0.1176 -1.2075 11 8 4.1494 -0.9324 -0.4498 12 7 3.3975 -0.4601 -2.4828 13 6 3.7957 -1.7744 -3.0051 14 6 4.6171 -1.5694 -4.2819 15 6 3.8149 -0.7178 -5.2685 16 6 4.6180 -0.5399 -6.5586 17 6 3.7676 0.2038 -7.5904 18 7 4.5363 0.3736 -8.8258 19 6 4.4744 -0.6485 -9.8734 20 6 5.3130 1.4877 -9.0012 21 1 5.0758 2.3998 -8.4739 22 6 6.4051 1.4447 -9.8570 23 7 6.6402 0.3637 -10.5701 24 14 7.5411 2.9210 -9.9965 25 1 8.6336 2.8011 -8.9977 26 1 8.1222 2.9712 -11.3621 27 1 6.7706 4.1644 -9.7405 28 6 3.5337 0.6534 -4.6498 29 6 2.6998 0.4737 -3.3773 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 2.4007 0.8954 2.1033 34 1 1.4933 2.4110 1.8043 35 1 4.1376 2.5503 2.3115 36 1 3.4544 3.5534 0.9895 37 1 4.8817 0.8448 0.7828 38 1 5.1881 2.3357 -0.1624 39 1 2.9062 -2.3617 -3.2332 40 1 4.3986 -2.2975 -2.2628 41 1 4.8372 -2.5374 -4.7321 42 1 5.5496 -1.0611 -4.0369 43 1 2.8714 -1.2149 -5.4938 44 1 4.8941 -1.5180 -6.9524 45 1 5.5199 0.0350 -6.3487 46 1 3.4914 1.1819 -7.1964 47 1 2.8657 -0.3713 -7.8001 48 1 5.3103 -1.3384 -9.7580 49 1 4.5303 -0.1704 -10.8513 50 1 3.5363 -1.1974 -9.7905 51 1 7.4036 0.3335 -11.1679 52 1 4.4766 1.1407 -4.4013 53 1 2.9828 1.2677 -5.3619 54 1 1.7210 0.0697 -3.6358 55 1 2.5783 1.4354 -2.8789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715478857.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:20 Heat of formation + Delta-G solvation = -89.629557 kcal Electronic energy + Delta-G solvation = -31091.063598 eV Core-core repulsion = 27127.359283 eV Total energy + Delta-G solvation = -3963.704315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.61833 -39.76918 -38.65348 -37.44862 -36.69828 -35.12446 -33.18374 -32.30005 -30.52765 -29.76780 -29.19250 -27.92693 -27.02752 -26.41557 -24.30972 -24.12780 -22.68011 -21.77235 -21.61750 -20.92248 -19.69566 -18.74574 -18.62170 -17.37051 -17.27324 -16.83842 -16.37092 -16.06108 -15.85643 -15.64253 -15.44269 -15.27529 -15.20313 -14.98439 -14.75742 -14.64235 -14.19058 -14.03758 -13.92819 -13.64891 -13.41720 -13.08974 -12.87924 -12.80015 -12.62424 -12.50222 -12.44057 -12.42703 -12.29337 -12.10422 -12.02699 -12.01550 -11.99132 -11.78182 -11.67322 -11.58938 -11.43339 -11.28222 -11.08180 -10.63130 -10.58535 -10.49884 -9.56590 -8.70612 -7.81607 -5.28257 1.46138 1.47741 1.55888 1.71982 2.07367 2.51826 2.82235 3.32916 3.46774 3.57798 3.63378 3.70789 3.79359 3.95215 4.05617 4.12930 4.18253 4.26349 4.31020 4.38823 4.39175 4.45767 4.47977 4.57298 4.59107 4.62278 4.62785 4.73488 4.76129 4.83587 4.85849 4.88856 4.91325 4.92938 4.97110 5.00404 5.04359 5.11230 5.12598 5.16364 5.18224 5.25417 5.33723 5.42337 5.43846 5.51857 5.62298 5.66387 5.69885 5.81595 6.29927 6.38851 6.52502 7.20290 7.28656 7.93167 8.37107 9.22683 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.002439 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.834215 B =11477.916770 C =12186.251624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.095 3.905 4 H 0.099 0.901 5 C -0.143 4.143 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.119 4.119 9 H 0.123 0.877 10 C 0.536 3.464 11 O -0.586 6.586 12 N -0.609 5.609 13 C 0.119 3.881 14 C -0.121 4.121 15 C -0.073 4.073 16 C -0.117 4.117 17 C 0.152 3.848 18 N -0.628 5.628 19 C 0.181 3.819 20 C -0.255 4.255 21 H 0.074 0.926 22 C -0.057 4.057 23 N -0.943 5.943 24 Si 0.966 3.034 25 H -0.289 1.289 26 H -0.296 1.296 27 H -0.265 1.265 28 C -0.127 4.127 29 C 0.111 3.889 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.083 0.917 44 H 0.034 0.966 45 H 0.031 0.969 46 H 0.055 0.945 47 H 0.053 0.947 48 H -0.006 1.006 49 H 0.024 0.976 50 H 0.022 0.978 51 H 0.245 0.755 52 H 0.053 0.947 53 H 0.089 0.911 54 H 0.084 0.916 55 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.617 3.955 23.416 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C 0.037 3.963 4 H 0.117 0.883 5 C -0.181 4.181 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.140 4.140 9 H 0.141 0.859 10 C 0.325 3.675 11 O -0.466 6.466 12 N -0.341 5.341 13 C -0.003 4.003 14 C -0.160 4.160 15 C -0.092 4.092 16 C -0.157 4.157 17 C 0.026 3.974 18 N -0.352 5.352 19 C 0.036 3.964 20 C -0.386 4.386 21 H 0.092 0.908 22 C -0.251 4.251 23 N -0.590 5.590 24 Si 0.794 3.206 25 H -0.216 1.216 26 H -0.223 1.223 27 H -0.189 1.189 28 C -0.165 4.165 29 C -0.011 4.011 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.012 0.988 49 H 0.043 0.957 50 H 0.040 0.960 51 H 0.055 0.945 52 H 0.072 0.928 53 H 0.108 0.892 54 H 0.103 0.897 55 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.176 3.335 23.661 27.783 hybrid contribution 1.172 0.246 -0.618 1.348 sum -13.004 3.581 23.043 26.700 Atomic orbital electron populations 1.22915 0.79720 1.03168 1.01100 1.88047 1.21228 1.28132 1.95082 1.22878 0.92304 0.85082 0.96017 0.88289 1.22876 0.98945 1.00212 0.96023 1.22415 0.94592 0.99025 0.99016 1.22380 0.96988 1.00091 0.96008 1.22363 0.97292 0.93832 1.00558 0.85898 1.20601 0.75844 0.90107 0.80909 1.90604 1.47098 1.53530 1.55395 1.48164 1.57960 1.17000 1.11004 1.21462 0.99190 0.84668 0.95009 1.21897 0.98255 1.00727 0.95083 1.21036 0.98825 0.96168 0.93193 1.22025 0.98883 0.99277 0.95495 1.21057 0.92801 0.98359 0.85152 1.44263 1.53942 1.21768 1.15215 1.20562 0.94234 0.90224 0.91362 1.19556 1.04469 0.90714 1.23819 0.90821 1.25919 0.99179 0.99811 1.00169 1.70286 1.29771 1.29373 1.29602 0.85281 0.79306 0.79686 0.76328 1.21561 1.22288 1.18945 1.21994 1.00551 0.97083 0.96895 1.21957 0.95395 0.93922 0.89817 0.92878 0.92492 0.90004 0.92442 0.89014 0.90561 0.88910 0.92625 0.90067 0.90477 0.91334 0.90656 0.93496 0.89863 0.94711 0.95053 0.92669 0.92866 0.98808 0.95684 0.95954 0.94515 0.92817 0.89245 0.89730 0.87806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.85 113.37 1.23 1.57 16 2 O -0.41 -8.23 8.81 -147.65 -1.30 -9.53 16 3 C 0.10 1.44 3.36 31.32 0.11 1.54 16 4 H 0.10 0.91 7.81 -2.39 -0.02 0.89 16 5 C -0.14 -1.92 6.56 31.67 0.21 -1.72 16 6 C -0.11 -1.38 6.91 31.88 0.22 -1.16 16 7 C -0.12 -2.10 6.32 31.67 0.20 -1.90 16 8 C -0.12 -2.16 2.61 -10.81 -0.03 -2.19 16 9 H 0.12 1.62 5.94 -2.39 -0.01 1.61 16 10 C 0.54 14.05 5.40 87.66 0.47 14.53 16 11 O -0.59 -20.54 15.25 -1.69 -0.03 -20.57 16 12 N -0.61 -14.11 2.97 -818.88 -2.43 -16.54 16 13 C 0.12 2.91 6.41 86.36 0.55 3.47 16 14 C -0.12 -3.09 5.36 30.67 0.16 -2.93 16 15 C -0.07 -1.84 2.15 -10.77 -0.02 -1.87 16 16 C -0.12 -4.10 5.01 30.59 0.15 -3.95 16 17 C 0.15 5.77 5.46 86.38 0.47 6.24 16 18 N -0.63 -31.51 2.93 -726.97 -2.13 -33.64 16 19 C 0.18 9.21 8.99 127.77 1.15 10.36 16 20 C -0.26 -13.95 9.67 84.03 0.81 -13.14 16 21 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 22 C -0.06 -3.20 5.39 84.86 0.46 -2.75 16 23 N -0.94 -56.58 10.10 21.65 0.22 -56.36 16 24 Si 0.97 45.19 29.56 68.60 2.03 47.22 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 28 C -0.13 -2.73 5.15 30.67 0.16 -2.57 16 29 C 0.11 1.89 6.31 86.36 0.55 2.44 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.53 8.10 -2.39 -0.02 0.51 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.04 8.08 -2.39 -0.02 1.02 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 1.36 6.94 -2.39 -0.02 1.35 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 1.94 7.05 -2.39 -0.02 1.93 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 44 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.06 1.96 6.43 -2.39 -0.02 1.94 16 47 H 0.05 1.81 7.86 -2.39 -0.02 1.79 16 48 H -0.01 -0.36 7.48 -2.39 -0.02 -0.38 16 49 H 0.02 1.38 6.96 -2.39 -0.02 1.36 16 50 H 0.02 0.96 7.83 -2.39 -0.02 0.94 16 51 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 52 H 0.05 1.31 8.14 -2.38 -0.02 1.30 16 53 H 0.09 1.81 6.50 -2.39 -0.02 1.79 16 54 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 55 H 0.10 1.29 5.33 -2.39 -0.01 1.28 16 Total: -1.00 -74.01 415.27 4.04 -69.97 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.83 Total: 13.45 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 6.85 Total: 5.99 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -4.35 Total: -106.54 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -1.33 Total: -30.09 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -74.01 4.04 -69.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715478857.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.656 kcal (2) G-P(sol) polarization free energy of solvation -74.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds