Wall clock time and date at job start Tue Mar 31 2020 22:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42903 * 113.99810 * 2 1 4 4 H 1.08989 * 110.54034 * 332.61084 * 3 2 1 5 5 C 1.54890 * 110.48336 * 95.22854 * 3 2 1 6 6 C 1.54892 * 102.74780 * 156.61832 * 5 3 2 7 7 C 1.54269 * 104.19479 * 322.05763 * 6 5 3 8 8 C 1.53875 * 106.60174 * 23.60681 * 7 6 5 9 9 H 1.09001 * 110.03586 * 240.67329 * 8 7 6 10 10 C 1.50697 * 110.03183 * 119.28293 * 8 7 6 11 11 O 1.21275 * 120.00529 * 241.45836 * 10 8 7 12 12 N 1.34778 * 119.99420 * 61.18468 * 10 8 7 13 13 C 1.46922 * 120.63399 * 359.97438 * 12 10 8 14 14 C 1.53624 * 108.54502 * 126.36889 * 13 12 10 15 15 C 1.53043 * 109.24105 * 54.85520 * 14 13 12 16 16 C 1.53002 * 109.45272 * 178.49636 * 15 14 13 17 17 C 1.53001 * 109.47180 * 295.06787 * 16 15 14 18 18 N 1.46498 * 109.47005 * 179.97438 * 17 16 15 19 19 C 1.46498 * 120.00077 * 269.99771 * 18 17 16 20 20 C 1.36943 * 119.99799 * 89.99989 * 18 17 16 21 21 H 1.07991 * 120.00023 * 22.34342 * 20 18 17 22 22 C 1.38816 * 119.99455 * 202.34578 * 20 18 17 23 23 N 1.31618 * 120.00417 * 11.34435 * 22 20 18 24 24 Si 1.86807 * 119.99388 * 191.34182 * 22 20 18 25 25 H 1.48504 * 109.46743 * 90.00183 * 24 22 20 26 26 H 1.48502 * 109.47012 * 209.99950 * 24 22 20 27 27 H 1.48497 * 109.47275 * 330.00159 * 24 22 20 28 28 C 1.53037 * 109.54199 * 298.51500 * 15 14 13 29 29 C 1.46935 * 120.62838 * 180.27185 * 12 10 8 30 30 H 1.09000 * 109.46747 * 59.99737 * 1 2 3 31 31 H 1.08996 * 109.46878 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46604 * 300.00189 * 1 2 3 33 33 H 1.08998 * 110.75711 * 38.30602 * 5 3 2 34 34 H 1.09001 * 110.75414 * 274.92831 * 5 3 2 35 35 H 1.08997 * 110.48693 * 203.37954 * 6 5 3 36 36 H 1.09000 * 110.48676 * 80.73197 * 6 5 3 37 37 H 1.09003 * 110.02745 * 264.32458 * 7 6 5 38 38 H 1.08995 * 110.03276 * 142.89834 * 7 6 5 39 39 H 1.09000 * 109.59023 * 246.20203 * 13 12 10 40 40 H 1.08995 * 109.58553 * 6.63517 * 13 12 10 41 41 H 1.09006 * 109.63746 * 294.87137 * 14 13 12 42 42 H 1.09002 * 109.43681 * 174.72357 * 14 13 12 43 43 H 1.09008 * 109.45790 * 58.53404 * 15 14 13 44 44 H 1.08999 * 109.46576 * 55.06275 * 16 15 14 45 45 H 1.08999 * 109.47358 * 175.06473 * 16 15 14 46 46 H 1.08999 * 109.46948 * 299.99260 * 17 16 15 47 47 H 1.08999 * 109.47232 * 59.99608 * 17 16 15 48 48 H 1.09005 * 109.46727 * 94.21294 * 19 18 17 49 49 H 1.09005 * 109.47186 * 214.20727 * 19 18 17 50 50 H 1.08997 * 109.47412 * 334.21254 * 19 18 17 51 51 H 0.97001 * 120.00024 * 180.02562 * 23 22 20 52 52 H 1.08993 * 109.49897 * 301.41203 * 28 15 14 53 53 H 1.08999 * 109.50315 * 181.31301 * 28 15 14 54 54 H 1.08993 * 109.58436 * 353.37322 * 29 12 10 55 55 H 1.09000 * 109.58342 * 113.79555 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3379 2.0234 -0.4695 5 6 2.3515 1.7469 1.4449 6 6 3.4602 2.8062 1.2259 7 6 4.2950 2.2438 0.0568 8 6 3.3732 1.2896 -0.7226 9 1 3.7881 0.2817 -0.7166 10 6 3.2111 1.7724 -2.1409 11 8 2.1131 2.0770 -2.5561 12 7 4.2873 1.8708 -2.9463 13 6 5.6248 1.5118 -2.4558 14 6 6.2397 0.4858 -3.4198 15 6 6.2235 1.0556 -4.8401 16 6 6.8690 0.0529 -5.7987 17 6 8.3481 -0.1123 -5.4439 18 7 8.9660 -1.0728 -6.3614 19 6 8.9794 -2.4994 -6.0285 20 6 9.5312 -0.6371 -7.5302 21 1 9.8503 0.3901 -7.6256 22 6 9.6937 -1.5160 -8.5924 23 7 9.1108 -2.6958 -8.5655 24 14 10.7396 -1.0240 -10.0599 25 1 12.1465 -1.4377 -9.8258 26 1 10.2239 -1.6924 -11.2816 27 1 10.6799 0.4489 -10.2388 28 6 4.7782 1.3152 -5.2712 29 6 4.1460 2.3455 -4.3297 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 2.7300 0.9063 2.0264 34 1 1.4819 2.1922 1.9283 35 1 4.0749 2.9056 2.1205 36 1 3.0219 3.7665 0.9543 37 1 5.1569 1.6988 0.4419 38 1 4.6252 3.0560 -0.5907 39 1 6.2515 2.4028 -2.4177 40 1 5.5440 1.0765 -1.4598 41 1 5.6599 -0.4368 -3.3914 42 1 7.2678 0.2793 -3.1224 43 1 6.7827 1.9910 -4.8625 44 1 6.3648 -0.9095 -5.7114 45 1 6.7794 0.4187 -6.8216 46 1 8.8524 0.8500 -5.5312 47 1 8.4377 -0.4781 -4.4210 48 1 8.1210 -2.9881 -6.4895 49 1 9.8984 -2.9511 -6.4021 50 1 8.9287 -2.6206 -4.9465 51 1 9.2247 -3.3100 -9.3076 52 1 4.2122 0.3849 -5.2253 53 1 4.7660 1.6990 -6.2912 54 1 3.0893 2.4606 -4.5704 55 1 4.6547 3.3031 -4.4411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715478860.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:24 Heat of formation + Delta-G solvation = -95.490170 kcal Electronic energy + Delta-G solvation = -30747.324043 eV Core-core repulsion = 26783.365593 eV Total energy + Delta-G solvation = -3963.958450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.74065 -39.76262 -38.70281 -37.45393 -36.92171 -35.16035 -33.20113 -32.29616 -30.55161 -29.79265 -29.21597 -27.91120 -27.09378 -26.44054 -24.30109 -24.19610 -22.64066 -21.75859 -21.60935 -20.97706 -19.96927 -18.72816 -18.41199 -17.49491 -17.38990 -16.81461 -16.46618 -16.05264 -15.83540 -15.61605 -15.57954 -15.45818 -15.15834 -15.00426 -14.69874 -14.53413 -14.32422 -14.06052 -13.93011 -13.62912 -13.40483 -13.28016 -12.99182 -12.82804 -12.78225 -12.57496 -12.43433 -12.41255 -12.26709 -12.16112 -12.12926 -12.02533 -12.01001 -11.73083 -11.63732 -11.58496 -11.49790 -11.29011 -11.06681 -10.72271 -10.61680 -10.52690 -9.66700 -8.74789 -7.80867 -5.28135 1.46259 1.47164 1.55910 1.55969 1.94983 2.52278 2.81475 3.32502 3.32921 3.49410 3.67113 3.75895 3.81608 3.92708 4.01435 4.11262 4.16438 4.28239 4.34367 4.38402 4.40438 4.43137 4.48406 4.49687 4.55164 4.62022 4.63335 4.70722 4.74632 4.80032 4.81204 4.83439 4.89234 4.93157 4.96063 4.98669 5.05623 5.08512 5.09880 5.15439 5.19243 5.25232 5.31943 5.35189 5.38926 5.49656 5.59855 5.61403 5.67698 5.76030 6.23459 6.36227 6.39158 7.10469 7.17980 7.92167 8.34831 9.23009 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022321 B = 0.002090 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.104994 B =13394.477422 C =13426.807666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.403 6.403 3 C 0.090 3.910 4 H 0.065 0.935 5 C -0.138 4.138 6 C -0.119 4.119 7 C -0.111 4.111 8 C -0.112 4.112 9 H 0.113 0.887 10 C 0.517 3.483 11 O -0.589 6.589 12 N -0.606 5.606 13 C 0.105 3.895 14 C -0.128 4.128 15 C -0.074 4.074 16 C -0.116 4.116 17 C 0.151 3.849 18 N -0.624 5.624 19 C 0.179 3.821 20 C -0.255 4.255 21 H 0.072 0.928 22 C -0.060 4.060 23 N -0.943 5.943 24 Si 0.968 3.032 25 H -0.286 1.286 26 H -0.298 1.298 27 H -0.267 1.267 28 C -0.123 4.123 29 C 0.116 3.884 30 H 0.031 0.969 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.029 0.971 45 H 0.031 0.969 46 H 0.048 0.952 47 H 0.063 0.937 48 H -0.003 1.003 49 H 0.016 0.984 50 H 0.031 0.969 51 H 0.246 0.754 52 H 0.044 0.956 53 H 0.073 0.927 54 H 0.071 0.929 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.027 12.401 23.661 29.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.323 6.323 3 C 0.031 3.969 4 H 0.083 0.917 5 C -0.176 4.176 6 C -0.156 4.156 7 C -0.148 4.148 8 C -0.134 4.134 9 H 0.131 0.869 10 C 0.307 3.693 11 O -0.470 6.470 12 N -0.338 5.338 13 C -0.016 4.016 14 C -0.166 4.166 15 C -0.093 4.093 16 C -0.157 4.157 17 C 0.025 3.975 18 N -0.348 5.348 19 C 0.033 3.967 20 C -0.386 4.386 21 H 0.090 0.910 22 C -0.255 4.255 23 N -0.591 5.591 24 Si 0.796 3.204 25 H -0.212 1.212 26 H -0.225 1.225 27 H -0.192 1.192 28 C -0.161 4.161 29 C -0.006 4.006 30 H 0.050 0.950 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.015 0.985 49 H 0.034 0.966 50 H 0.050 0.950 51 H 0.055 0.945 52 H 0.063 0.937 53 H 0.091 0.909 54 H 0.090 0.910 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.446 12.278 23.328 29.152 hybrid contribution -0.083 -0.343 -1.818 1.852 sum -12.530 11.934 21.510 27.606 Atomic orbital electron populations 1.22874 0.79954 1.03525 1.00262 1.87824 1.21093 1.28256 1.95097 1.23004 0.93211 0.84563 0.96074 0.91710 1.22939 0.99811 0.99723 0.95082 1.22296 0.96727 0.97745 0.98847 1.22257 0.97861 0.97985 0.96715 1.22050 0.98137 1.02745 0.90425 0.86912 1.21026 0.83352 0.76486 0.88479 1.90629 1.27011 1.52340 1.77050 1.48207 1.08341 1.64738 1.12466 1.22236 0.81544 0.99366 0.98491 1.22082 1.02227 0.98124 0.94153 1.21055 0.94718 0.98863 0.94689 1.22024 0.97998 0.97580 0.98069 1.21077 0.91063 0.92662 0.92657 1.44297 1.66162 1.03469 1.20849 1.20509 0.98275 0.84147 0.93730 1.19569 1.31679 0.96503 0.90838 0.90990 1.25819 1.01771 0.97484 1.00387 1.70248 1.46846 1.09570 1.32394 0.85248 0.78353 0.77964 0.78805 1.21242 1.22487 1.19169 1.21898 0.96247 0.98727 0.99258 1.21567 1.01524 0.97219 0.80310 0.94980 0.88545 0.92501 0.89798 0.90495 0.88645 0.91571 0.87711 0.90679 0.88649 0.87398 0.93060 0.88889 0.89757 0.95210 0.95049 0.93338 0.91876 0.98503 0.96561 0.95046 0.94514 0.93742 0.90862 0.91017 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.85 113.37 1.23 1.75 16 2 O -0.40 -9.05 10.41 -148.98 -1.55 -10.60 16 3 C 0.09 1.74 2.66 31.67 0.08 1.83 16 4 H 0.06 1.52 6.57 -2.39 -0.02 1.51 16 5 C -0.14 -1.75 6.62 31.89 0.21 -1.54 16 6 C -0.12 -1.15 6.83 31.67 0.22 -0.93 16 7 C -0.11 -1.19 4.79 31.32 0.15 -1.04 16 8 C -0.11 -2.01 2.18 -10.81 -0.02 -2.03 16 9 H 0.11 1.99 7.64 -2.39 -0.02 1.97 16 10 C 0.52 12.55 6.88 87.66 0.60 13.15 16 11 O -0.59 -19.03 14.83 -3.02 -0.04 -19.07 16 12 N -0.61 -12.71 2.93 -818.03 -2.40 -15.10 16 13 C 0.11 1.59 5.31 86.51 0.46 2.05 16 14 C -0.13 -2.60 5.16 30.82 0.16 -2.44 16 15 C -0.07 -1.85 2.15 -10.77 -0.02 -1.87 16 16 C -0.12 -4.15 5.01 30.60 0.15 -3.99 16 17 C 0.15 5.73 5.46 86.38 0.47 6.20 16 18 N -0.62 -31.37 2.93 -726.94 -2.13 -33.50 16 19 C 0.18 8.99 9.01 127.77 1.15 10.14 16 20 C -0.26 -14.08 9.67 84.03 0.81 -13.27 16 21 H 0.07 3.82 7.84 -2.92 -0.02 3.80 16 22 C -0.06 -3.43 5.13 84.86 0.44 -3.00 16 23 N -0.94 -57.10 10.58 21.65 0.23 -56.87 16 24 Si 0.97 45.63 29.57 68.60 2.03 47.66 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 28 C -0.12 -3.11 5.36 30.68 0.16 -2.94 16 29 C 0.12 2.62 6.43 86.37 0.56 3.17 16 30 H 0.03 0.63 8.11 -2.39 -0.02 0.61 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.10 0.66 7.66 -2.39 -0.02 0.64 16 38 H 0.07 0.82 7.06 -2.39 -0.02 0.81 16 39 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.11 1.20 4.74 -2.39 -0.01 1.19 16 41 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.09 1.71 6.50 -2.39 -0.02 1.70 16 43 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.05 1.77 8.03 -2.39 -0.02 1.75 16 47 H 0.06 2.06 6.25 -2.39 -0.01 2.05 16 48 H 0.00 -0.19 7.42 -2.38 -0.02 -0.20 16 49 H 0.02 0.87 7.19 -2.38 -0.02 0.85 16 50 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 51 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 52 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 53 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 54 H 0.07 1.88 7.00 -2.39 -0.02 1.86 16 55 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -73.30 414.23 3.79 -69.52 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.84 Total: 12.73 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 6.81 Total: 5.24 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -4.29 Total: -105.47 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -1.60 Total: -29.67 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -73.30 3.79 -69.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715478860.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.974 kcal (2) G-P(sol) polarization free energy of solvation -73.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds