Wall clock time and date at job start Tue Mar 31 2020 22:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99868 * 2 1 4 4 H 1.08997 * 110.05702 * 28.58598 * 3 2 1 5 5 C 1.54266 * 110.03382 * 267.16339 * 3 2 1 6 6 C 1.54884 * 104.19749 * 264.32711 * 5 3 2 7 7 C 1.54964 * 102.77854 * 322.08345 * 6 5 3 8 8 C 1.53880 * 110.02962 * 149.99836 * 3 2 1 9 9 H 1.08996 * 110.03562 * 359.95682 * 8 3 2 10 10 C 1.50693 * 110.03278 * 238.56566 * 8 3 2 11 11 O 1.21286 * 120.00158 * 333.96582 * 10 8 3 12 12 N 1.34779 * 119.99997 * 153.96315 * 10 8 3 13 13 C 1.46926 * 120.63198 * 185.07352 * 12 10 8 14 14 C 1.53194 * 108.77510 * 233.62878 * 13 12 10 15 15 C 1.53036 * 109.31329 * 305.36753 * 14 13 12 16 16 C 1.53008 * 109.45894 * 181.38449 * 15 14 13 17 17 C 1.52995 * 109.46895 * 174.96811 * 16 15 14 18 18 N 1.46504 * 109.46821 * 179.97438 * 17 16 15 19 19 C 1.46505 * 120.00048 * 270.00344 * 18 17 16 20 20 C 1.36937 * 119.99795 * 90.00570 * 18 17 16 21 21 H 1.07992 * 119.99749 * 351.09278 * 20 18 17 22 22 C 1.38808 * 119.99939 * 171.09015 * 20 18 17 23 23 N 1.31616 * 120.00315 * 328.82670 * 22 20 18 24 24 Si 1.86802 * 119.99864 * 148.82449 * 22 20 18 25 25 H 1.48506 * 109.47090 * 265.00529 * 24 22 20 26 26 H 1.48497 * 109.47332 * 25.00434 * 24 22 20 27 27 H 1.48492 * 109.47131 * 145.00953 * 24 22 20 28 28 C 1.53035 * 109.52782 * 61.36959 * 15 14 13 29 29 C 1.46930 * 120.62761 * 5.09598 * 12 10 8 30 30 H 1.09000 * 109.46948 * 299.99899 * 1 2 3 31 31 H 1.08995 * 109.47278 * 59.99966 * 1 2 3 32 32 H 1.09002 * 109.47399 * 180.02562 * 1 2 3 33 33 H 1.09005 * 110.48551 * 23.00826 * 5 3 2 34 34 H 1.08999 * 110.48424 * 145.64530 * 5 3 2 35 35 H 1.09005 * 110.75815 * 80.37308 * 6 5 3 36 36 H 1.09004 * 110.75439 * 203.55350 * 6 5 3 37 37 H 1.09002 * 110.47542 * 279.23456 * 7 6 5 38 38 H 1.08998 * 110.52758 * 156.57119 * 7 6 5 39 39 H 1.09004 * 109.58795 * 113.84580 * 13 12 10 40 40 H 1.09001 * 109.58493 * 353.41839 * 13 12 10 41 41 H 1.08995 * 109.49547 * 185.41257 * 14 13 12 42 42 H 1.09000 * 109.51962 * 65.33276 * 14 13 12 43 43 H 1.08998 * 109.45943 * 301.35523 * 15 14 13 44 44 H 1.08994 * 109.46946 * 54.97125 * 16 15 14 45 45 H 1.08996 * 109.46617 * 294.97218 * 16 15 14 46 46 H 1.09007 * 109.47197 * 60.00304 * 17 16 15 47 47 H 1.08991 * 109.47776 * 300.00136 * 17 16 15 48 48 H 1.09007 * 109.46510 * 265.72697 * 19 18 17 49 49 H 1.08993 * 109.46791 * 25.72668 * 19 18 17 50 50 H 1.08995 * 109.46517 * 145.73062 * 19 18 17 51 51 H 0.97000 * 120.00171 * 179.97438 * 23 22 20 52 52 H 1.09006 * 109.49732 * 58.58116 * 28 15 14 53 53 H 1.09007 * 109.49859 * 178.67461 * 28 15 14 54 54 H 1.09000 * 109.58346 * 246.15502 * 29 12 10 55 55 H 1.08994 * 109.58910 * 6.57958 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3409 2.0126 0.4899 5 6 2.2906 1.7591 -1.4475 6 6 3.7774 1.3923 -1.6793 7 6 4.4275 1.7148 -0.3100 8 6 3.3683 1.2778 0.7229 9 1 3.5837 0.2688 1.0744 10 6 3.3542 2.2369 1.8851 11 8 2.6122 3.1962 1.8707 12 7 4.1660 2.0287 2.9406 13 6 4.0857 2.8900 4.1282 14 6 5.4812 3.4451 4.4301 15 6 6.4701 2.2845 4.5610 16 6 7.8584 2.8332 4.8967 17 6 8.8188 1.6696 5.1511 18 7 10.1482 2.1950 5.4719 19 6 11.1173 2.4397 4.4007 20 6 10.4851 2.4572 6.7730 21 1 9.7310 2.4154 7.5449 22 6 11.7957 2.7768 7.0997 23 7 12.7902 2.2705 6.4018 24 14 12.1483 3.9256 8.5300 25 1 12.3105 5.3119 8.0230 26 1 11.0181 3.8795 9.4921 27 1 13.3965 3.4986 9.2117 28 6 6.5321 1.5138 3.2404 29 6 5.1486 0.9364 2.9252 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6512 1.2202 -2.1468 34 1 2.1433 2.8346 -1.5456 35 1 3.8818 0.3333 -1.9158 36 1 4.2084 2.0072 -2.4694 37 1 4.6258 2.7832 -0.2244 38 1 5.3465 1.1436 -0.1792 39 1 3.7323 2.3073 4.9790 40 1 3.3983 3.7139 3.9362 41 1 5.4549 4.0077 5.3632 42 1 5.7957 4.1011 3.6184 43 1 6.1418 1.6157 5.3567 44 1 7.7970 3.4553 5.7895 45 1 8.2245 3.4307 4.0619 46 1 8.8802 1.0473 4.2582 47 1 8.4527 1.0721 5.9858 48 1 11.7621 1.5681 4.2881 49 1 10.5871 2.6227 3.4661 50 1 11.7234 3.3103 4.6512 51 1 13.7061 2.4942 6.6299 52 1 6.8363 2.1879 2.4397 53 1 7.2540 0.7016 3.3267 54 1 4.8819 0.1945 3.6778 55 1 5.1626 0.4714 1.9395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715478864.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:28 Heat of formation + Delta-G solvation = -93.137001 kcal Electronic energy + Delta-G solvation = -30647.951080 eV Core-core repulsion = 26684.094671 eV Total energy + Delta-G solvation = -3963.856409 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.72877 -39.85650 -38.76908 -37.48731 -36.68902 -35.19575 -33.24252 -32.30268 -30.59732 -29.80951 -29.22715 -27.91246 -27.22457 -26.47852 -24.35787 -24.14079 -22.66339 -21.81643 -21.56835 -20.98412 -19.71896 -18.84133 -18.66337 -17.40494 -17.17570 -16.82240 -16.41225 -16.19878 -16.09725 -15.73785 -15.59200 -15.25647 -15.18026 -14.96901 -14.86453 -14.59427 -14.19196 -14.10738 -14.01924 -13.59631 -13.43818 -13.18198 -13.01954 -12.79137 -12.71861 -12.62936 -12.49171 -12.40731 -12.35022 -12.17011 -12.12046 -12.01230 -11.95903 -11.77582 -11.70980 -11.58256 -11.51806 -11.33678 -11.09173 -10.75280 -10.57927 -10.46563 -9.67708 -8.88466 -7.90280 -5.13957 1.44679 1.48919 1.49787 1.56354 1.90228 2.53252 2.79502 3.20431 3.32670 3.53009 3.66199 3.70802 3.80505 3.94972 4.00595 4.07381 4.17200 4.29104 4.33924 4.36376 4.39352 4.42541 4.44828 4.49819 4.56592 4.61037 4.67535 4.71139 4.74468 4.79644 4.82629 4.84426 4.84489 4.89192 4.93626 4.95751 5.00509 5.09089 5.10152 5.14014 5.17221 5.24246 5.26058 5.35130 5.37776 5.52625 5.56674 5.61373 5.65715 5.71723 6.21917 6.27907 6.36165 7.07347 7.13686 7.92241 8.32607 9.17023 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.002071 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.101032 B =13514.158454 C =14018.733945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.092 3.908 4 H 0.061 0.939 5 C -0.142 4.142 6 C -0.114 4.114 7 C -0.108 4.108 8 C -0.110 4.110 9 H 0.120 0.880 10 C 0.520 3.480 11 O -0.585 6.585 12 N -0.606 5.606 13 C 0.113 3.887 14 C -0.120 4.120 15 C -0.076 4.076 16 C -0.116 4.116 17 C 0.150 3.850 18 N -0.624 5.624 19 C 0.172 3.828 20 C -0.259 4.259 21 H 0.074 0.926 22 C -0.054 4.054 23 N -0.927 5.927 24 Si 0.947 3.053 25 H -0.292 1.292 26 H -0.268 1.268 27 H -0.298 1.298 28 C -0.126 4.126 29 C 0.105 3.895 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.041 0.959 45 H 0.044 0.956 46 H 0.056 0.944 47 H 0.041 0.959 48 H -0.003 1.003 49 H 0.036 0.964 50 H 0.016 0.984 51 H 0.248 0.752 52 H 0.061 0.939 53 H 0.088 0.912 54 H 0.086 0.914 55 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.168 -5.086 -16.008 29.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.034 3.966 4 H 0.079 0.921 5 C -0.180 4.180 6 C -0.151 4.151 7 C -0.145 4.145 8 C -0.131 4.131 9 H 0.138 0.862 10 C 0.310 3.690 11 O -0.466 6.466 12 N -0.337 5.337 13 C -0.009 4.009 14 C -0.159 4.159 15 C -0.096 4.096 16 C -0.156 4.156 17 C 0.025 3.975 18 N -0.347 5.347 19 C 0.027 3.973 20 C -0.389 4.389 21 H 0.092 0.908 22 C -0.249 4.249 23 N -0.574 5.574 24 Si 0.776 3.224 25 H -0.219 1.219 26 H -0.193 1.193 27 H -0.225 1.225 28 C -0.164 4.164 29 C -0.017 4.017 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.015 0.985 49 H 0.055 0.945 50 H 0.035 0.965 51 H 0.057 0.943 52 H 0.079 0.921 53 H 0.106 0.894 54 H 0.104 0.896 55 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.285 -4.766 -15.973 29.455 hybrid contribution 0.539 1.144 1.114 1.685 sum -23.746 -3.622 -14.859 28.245 Atomic orbital electron populations 1.22945 0.79864 1.03866 1.00371 1.87854 1.21008 1.27589 1.95119 1.22642 0.93344 0.84488 0.96098 0.92102 1.22832 0.98437 1.01273 0.95431 1.22462 0.93833 1.02527 0.96270 1.22344 0.97253 1.01458 0.93493 1.22029 0.97057 1.00175 0.93855 0.86238 1.20872 0.78933 0.85713 0.83530 1.90643 1.42944 1.32447 1.80611 1.48231 1.36632 1.32643 1.16209 1.21611 0.97510 0.94668 0.87142 1.21877 0.94067 0.97925 1.01991 1.21047 0.93745 0.96730 0.98034 1.22001 0.94644 0.98940 0.99973 1.20979 0.83804 0.94148 0.98547 1.44353 1.11637 1.75628 1.03120 1.20541 0.90850 0.97707 0.88198 1.19471 0.93049 1.40174 0.86228 0.90840 1.25373 0.95493 1.02802 1.01273 1.70381 0.98283 1.43598 1.45152 0.85536 0.77101 0.80057 0.79728 1.21920 1.19278 1.22527 1.21982 0.96705 1.00712 0.97002 1.22032 0.86956 0.88299 1.04398 0.94444 0.93094 0.87915 0.89984 0.91048 0.90023 0.89978 0.92233 0.88551 0.90017 0.90654 0.90485 0.92876 0.90396 0.93994 0.93758 0.92606 0.94070 0.98459 0.94512 0.96472 0.94282 0.92068 0.89363 0.89591 0.87699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.85 113.37 1.23 1.56 16 2 O -0.40 -7.16 10.25 -148.98 -1.53 -8.68 16 3 C 0.09 1.70 2.91 31.32 0.09 1.80 16 4 H 0.06 1.38 6.40 -2.39 -0.02 1.36 16 5 C -0.14 -2.11 6.57 31.67 0.21 -1.90 16 6 C -0.11 -1.41 6.91 31.91 0.22 -1.19 16 7 C -0.11 -1.56 6.12 31.70 0.19 -1.36 16 8 C -0.11 -1.92 2.17 -10.82 -0.02 -1.94 16 9 H 0.12 1.79 6.45 -2.39 -0.02 1.77 16 10 C 0.52 11.95 6.66 87.65 0.58 12.53 16 11 O -0.59 -17.75 15.01 -3.05 -0.05 -17.79 16 12 N -0.61 -12.16 2.97 -818.90 -2.43 -14.59 16 13 C 0.11 2.35 6.44 86.36 0.56 2.91 16 14 C -0.12 -2.64 5.36 30.67 0.16 -2.48 16 15 C -0.08 -1.73 2.15 -10.77 -0.02 -1.76 16 16 C -0.12 -3.63 5.01 30.60 0.15 -3.47 16 17 C 0.15 5.61 5.40 86.38 0.47 6.08 16 18 N -0.62 -30.79 2.93 -726.94 -2.13 -32.92 16 19 C 0.17 8.44 9.09 127.77 1.16 9.60 16 20 C -0.26 -14.25 9.64 84.03 0.81 -13.44 16 21 H 0.07 3.94 7.99 -2.91 -0.02 3.92 16 22 C -0.05 -3.06 4.72 84.86 0.40 -2.66 16 23 N -0.93 -55.47 11.14 21.65 0.24 -55.23 16 24 Si 0.95 45.36 29.65 68.60 2.03 47.40 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 28 C -0.13 -2.37 5.14 30.67 0.16 -2.21 16 29 C 0.10 1.60 6.16 86.36 0.53 2.13 16 30 H 0.04 0.51 8.10 -2.39 -0.02 0.49 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.07 8.07 -2.38 -0.02 1.05 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 37 H 0.06 1.04 7.85 -2.39 -0.02 1.02 16 38 H 0.10 1.06 7.72 -2.39 -0.02 1.05 16 39 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.07 1.81 7.00 -2.39 -0.02 1.79 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.06 1.86 6.47 -2.38 -0.02 1.84 16 47 H 0.04 1.55 8.04 -2.39 -0.02 1.53 16 48 H 0.00 -0.15 7.76 -2.38 -0.02 -0.17 16 49 H 0.04 1.50 8.04 -2.39 -0.02 1.48 16 50 H 0.02 0.90 6.83 -2.39 -0.02 0.89 16 51 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 52 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 53 H 0.09 1.61 6.50 -2.38 -0.02 1.59 16 54 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 55 H 0.10 1.21 5.15 -2.39 -0.01 1.20 16 Total: -1.00 -69.89 417.08 3.85 -66.04 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.83 Total: 11.59 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 6.88 Total: 4.20 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -4.32 Total: -102.75 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -1.57 Total: -26.48 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.40 kcal Total: -69.89 3.85 -66.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715478864.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.102 kcal (2) G-P(sol) polarization free energy of solvation -69.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds