Wall clock time and date at job start Tue Mar 31 2020 22:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 114.00202 * 2 1 4 4 C 1.53003 * 109.46907 * 180.02562 * 3 2 1 5 5 C 1.50696 * 115.54748 * 294.45970 * 4 3 2 6 6 O 1.21282 * 119.99637 * 98.67631 * 5 4 3 7 7 N 1.34783 * 120.00484 * 278.67102 * 5 4 3 8 8 C 1.46496 * 120.00168 * 175.93547 * 7 5 4 9 9 C 1.52996 * 109.47096 * 179.97438 * 8 7 5 10 10 N 1.46500 * 109.47401 * 179.97438 * 9 8 7 11 11 C 1.36929 * 120.00292 * 270.00446 * 10 9 8 12 12 H 1.08006 * 120.00320 * 140.99349 * 11 10 9 13 13 C 1.38811 * 120.00046 * 320.99511 * 11 10 9 14 14 N 1.31630 * 119.99905 * 159.36855 * 13 11 10 15 15 Si 1.86793 * 120.00002 * 339.36541 * 13 11 10 16 16 H 1.48502 * 109.47042 * 95.24938 * 15 13 11 17 17 H 1.48502 * 109.47402 * 215.24164 * 15 13 11 18 18 H 1.48496 * 109.47261 * 335.24701 * 15 13 11 19 19 C 1.46502 * 119.99594 * 89.99896 * 10 9 8 20 20 C 1.54237 * 108.89860 * 238.19694 * 19 10 9 21 21 C 1.50477 * 108.52487 * 159.26702 * 20 19 10 22 22 C 1.54061 * 112.50077 * 94.15244 * 21 20 19 23 23 C 1.54071 * 112.81686 * 318.28565 * 22 21 20 24 24 C 1.50479 * 112.49327 * 318.28274 * 23 22 21 25 25 C 1.45546 * 108.89158 * 115.31593 * 19 10 9 26 26 C 1.52998 * 117.52026 * 80.16739 * 4 3 2 27 27 C 1.53000 * 60.00251 * 107.47932 * 26 4 3 28 28 H 1.08992 * 109.47702 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46975 * 300.00366 * 1 2 3 30 30 H 1.09001 * 109.47093 * 60.00076 * 1 2 3 31 31 H 1.08997 * 109.47670 * 59.99959 * 3 2 1 32 32 H 1.09004 * 109.47096 * 299.99599 * 3 2 1 33 33 H 0.97001 * 119.99388 * 355.93704 * 7 5 4 34 34 H 1.08997 * 109.47038 * 300.00531 * 8 7 5 35 35 H 1.09002 * 109.46982 * 60.00113 * 8 7 5 36 36 H 1.09002 * 109.47639 * 300.00712 * 9 8 7 37 37 H 1.09002 * 109.47035 * 60.00242 * 9 8 7 38 38 H 0.96997 * 119.99192 * 180.02562 * 14 13 11 39 39 H 1.09005 * 108.87551 * 356.71733 * 19 10 9 40 40 H 1.08993 * 109.63234 * 278.98116 * 20 19 10 41 41 H 1.08998 * 109.62686 * 39.55625 * 20 19 10 42 42 H 1.08998 * 108.87414 * 333.37303 * 21 20 19 43 43 H 1.09003 * 108.87829 * 214.93240 * 21 20 19 44 44 H 1.08995 * 108.81485 * 197.42416 * 22 21 20 45 45 H 1.08999 * 108.72731 * 79.08139 * 22 21 20 46 46 H 1.08997 * 108.87793 * 197.50875 * 23 22 21 47 47 H 1.09004 * 108.87905 * 79.05882 * 23 22 21 48 48 H 1.08996 * 109.62859 * 334.44361 * 24 23 22 49 49 H 1.09003 * 109.62835 * 213.86178 * 24 23 22 50 50 H 1.09005 * 108.89428 * 303.44003 * 25 19 10 51 51 H 1.08997 * 108.89540 * 62.03099 * 25 19 10 52 52 H 1.09003 * 117.49809 * 214.97122 * 26 4 3 53 53 H 1.08999 * 117.49892 * 359.97438 * 26 4 3 54 54 H 1.09000 * 117.49612 * 252.50856 * 27 26 4 55 55 H 1.08997 * 117.51671 * 107.48144 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 6 4.1394 0.5717 1.2366 6 8 4.4522 -0.6001 1.2421 7 7 4.3319 1.3257 2.3370 8 6 4.8356 0.7107 3.5675 9 6 4.9632 1.7782 4.6560 10 7 5.4663 1.1631 5.8868 11 6 4.5884 0.6564 6.8074 12 1 4.8189 -0.2637 7.3241 13 6 3.4022 1.3251 7.0767 14 7 2.3928 0.6807 7.6231 15 14 3.2383 3.1394 6.6636 16 1 2.6001 3.2879 5.3309 17 1 2.3995 3.8073 7.6911 18 1 4.5846 3.7654 6.6402 19 6 6.9087 1.0901 6.1325 20 6 7.3093 -0.3874 6.3204 21 6 8.7860 -0.5189 6.0629 22 6 9.6203 -0.4260 7.3547 23 6 9.1200 0.6733 8.3113 24 6 8.7444 1.9384 7.5884 25 6 7.2305 1.9042 7.2953 26 6 4.2214 0.8978 -1.3379 27 6 4.3312 2.2859 -0.7039 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 4.1370 2.2757 2.3141 34 1 4.1426 -0.0635 3.8967 35 1 5.8130 0.2668 3.3782 36 1 5.6564 2.5522 4.3265 37 1 3.9860 2.2225 4.8455 38 1 1.5638 1.1480 7.8109 39 1 7.4348 1.4897 5.2655 40 1 7.0862 -0.7005 7.3403 41 1 6.7579 -1.0088 5.6148 42 1 9.0976 0.2749 5.3840 43 1 8.9770 -1.4813 5.5882 44 1 10.6566 -0.2162 7.0896 45 1 9.5770 -1.3860 7.8691 46 1 9.9064 0.8989 9.0315 47 1 8.2476 0.3023 8.8494 48 1 9.2974 2.0026 6.6513 49 1 8.9769 2.8004 8.2138 50 1 6.8816 2.9221 7.1210 51 1 6.7131 1.4982 8.1646 52 1 5.1094 0.2659 -1.3228 53 1 3.5860 0.7949 -2.2175 54 1 3.7681 3.0965 -1.1665 55 1 5.2913 2.5675 -0.2715 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716713969.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:05 Heat of formation + Delta-G solvation = -66.021696 kcal Electronic energy + Delta-G solvation = -31198.805823 eV Core-core repulsion = 27236.125222 eV Total energy + Delta-G solvation = -3962.680601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.23198 -40.23326 -38.93974 -37.54619 -37.12173 -35.60018 -33.84872 -32.91640 -32.02881 -29.71343 -29.13241 -26.73745 -26.33809 -25.47087 -25.24760 -23.64946 -23.30208 -22.84107 -21.15216 -20.73336 -20.03423 -18.59955 -18.10570 -17.52264 -17.30710 -17.12348 -16.85474 -16.56452 -16.33732 -16.05391 -15.83712 -15.44908 -15.29691 -15.05241 -14.77543 -14.70732 -14.42286 -14.03726 -13.81205 -13.73731 -13.50075 -13.40197 -13.27884 -13.03079 -12.87431 -12.67085 -12.52910 -12.50847 -12.36575 -11.98823 -11.80230 -11.71824 -11.67006 -11.49466 -11.31673 -11.29259 -11.20213 -11.09676 -10.95110 -10.85261 -10.60740 -10.57873 -10.12340 -8.75600 -8.15899 -5.57973 1.26982 1.41291 1.52231 1.55812 2.06387 2.38392 2.43281 3.05478 3.09655 3.30136 3.61299 3.72142 3.83092 3.90795 4.01514 4.04618 4.08940 4.16051 4.20731 4.31414 4.38249 4.41158 4.43847 4.47772 4.49237 4.50621 4.58864 4.59616 4.67883 4.71290 4.78538 4.80401 4.82972 4.91996 4.95652 5.01163 5.03677 5.07834 5.14519 5.17763 5.30861 5.37084 5.38584 5.41831 5.45044 5.49149 5.64215 5.67706 5.74344 6.01548 6.17883 6.26053 6.54464 7.00822 7.23639 7.65095 8.05783 9.03827 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011108 B = 0.003420 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.025130 B = 8184.758142 C = 9582.987268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.103 3.897 4 C -0.184 4.184 5 C 0.545 3.455 6 O -0.585 6.585 7 N -0.713 5.713 8 C 0.120 3.880 9 C 0.130 3.870 10 N -0.610 5.610 11 C -0.239 4.239 12 H 0.036 0.964 13 C -0.026 4.026 14 N -0.954 5.954 15 Si 0.943 3.057 16 H -0.271 1.271 17 H -0.315 1.315 18 H -0.248 1.248 19 C 0.180 3.820 20 C -0.113 4.113 21 C -0.111 4.111 22 C -0.109 4.109 23 C -0.118 4.118 24 C -0.104 4.104 25 C -0.119 4.119 26 C -0.140 4.140 27 C -0.119 4.119 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.412 0.588 34 H 0.024 0.976 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.260 0.740 39 H 0.070 0.930 40 H 0.040 0.960 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.052 0.948 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.044 0.956 51 H 0.038 0.962 52 H 0.085 0.915 53 H 0.123 0.877 54 H 0.141 0.859 55 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.815 9.129 -15.594 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C 0.027 3.973 4 C -0.188 4.188 5 C 0.332 3.668 6 O -0.464 6.464 7 N -0.365 5.365 8 C -0.007 4.007 9 C 0.004 3.996 10 N -0.332 5.332 11 C -0.369 4.369 12 H 0.053 0.947 13 C -0.221 4.221 14 N -0.598 5.598 15 Si 0.772 3.228 16 H -0.198 1.198 17 H -0.245 1.245 18 H -0.171 1.171 19 C 0.075 3.925 20 C -0.152 4.152 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.156 4.156 24 C -0.142 4.142 25 C -0.158 4.158 26 C -0.178 4.178 27 C -0.156 4.156 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.248 0.752 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.056 0.944 48 H 0.095 0.905 49 H 0.088 0.912 50 H 0.062 0.938 51 H 0.056 0.944 52 H 0.103 0.897 53 H 0.141 0.859 54 H 0.159 0.841 55 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.014 8.139 -15.477 19.236 hybrid contribution -1.428 0.450 0.724 1.663 sum 6.587 8.588 -14.753 18.297 Atomic orbital electron populations 1.22908 0.79453 1.03583 1.01036 1.87971 1.21428 1.28887 1.95600 1.22030 0.88212 0.84733 1.02324 1.21355 0.94864 1.09734 0.92816 1.20125 0.76749 0.85601 0.84332 1.90656 1.52559 1.18812 1.84409 1.45930 1.66624 1.12972 1.10958 1.21821 0.97712 0.97406 0.83741 1.21419 0.98696 0.93808 0.85656 1.44367 1.02293 1.70342 1.16179 1.18436 0.99056 1.02690 1.16739 0.94651 1.26160 0.96124 1.01672 0.98163 1.70024 1.03655 1.37356 1.48808 0.85859 0.78361 0.82364 0.76261 1.19803 1.24464 1.17130 1.19558 0.82190 0.93875 0.96833 1.21557 0.96135 0.97472 1.00031 1.21273 0.93598 1.01748 0.98245 1.21865 0.99404 0.98273 0.95128 1.21329 1.00520 0.95385 0.98324 1.21253 0.94067 0.97697 1.01217 1.20858 0.96511 0.99209 0.99230 1.23024 1.01885 0.99304 0.93570 1.23331 1.00853 0.92011 0.99393 0.89419 0.94161 0.91391 0.92762 0.88539 0.75178 0.95779 0.92520 0.89913 0.94083 0.93156 0.91188 0.94150 0.94783 0.91230 0.92493 0.90423 0.92876 0.90962 0.94371 0.90456 0.91209 0.93760 0.94353 0.89652 0.85886 0.84114 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.79 16 2 O -0.42 -12.19 10.64 -148.98 -1.58 -13.77 16 3 C 0.10 2.29 5.76 71.98 0.41 2.70 16 4 C -0.18 -4.42 2.13 -52.93 -0.11 -4.53 16 5 C 0.54 18.90 6.92 87.65 0.61 19.51 16 6 O -0.58 -26.50 17.02 -3.03 -0.05 -26.56 16 7 N -0.71 -23.15 5.55 -463.07 -2.57 -25.72 16 8 C 0.12 4.79 6.00 86.38 0.52 5.31 16 9 C 0.13 5.14 4.55 86.38 0.39 5.53 16 10 N -0.61 -27.30 1.91 -688.46 -1.32 -28.62 16 11 C -0.24 -13.27 8.69 84.03 0.73 -12.54 16 12 H 0.04 2.25 7.50 -2.91 -0.02 2.23 16 13 C -0.03 -1.47 5.32 84.86 0.45 -1.02 16 14 N -0.95 -60.19 13.97 21.65 0.30 -59.89 16 15 Si 0.94 44.52 24.99 68.60 1.71 46.23 16 16 H -0.27 -11.89 6.69 99.48 0.67 -11.22 16 17 H -0.32 -15.48 7.11 99.48 0.71 -14.77 16 18 H -0.25 -10.78 7.11 99.48 0.71 -10.07 16 19 C 0.18 6.64 2.12 43.13 0.09 6.73 16 20 C -0.11 -4.13 4.36 30.20 0.13 -4.00 16 21 C -0.11 -3.03 5.31 30.14 0.16 -2.87 16 22 C -0.11 -2.57 5.85 31.32 0.18 -2.39 16 23 C -0.12 -2.99 5.31 30.14 0.16 -2.83 16 24 C -0.10 -2.69 5.61 30.20 0.17 -2.52 16 25 C -0.12 -4.19 4.50 28.74 0.13 -4.06 16 26 C -0.14 -2.74 9.89 30.59 0.30 -2.44 16 27 C -0.12 -1.68 9.92 30.60 0.30 -1.37 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.37 8.09 -2.38 -0.02 1.35 16 33 H 0.41 10.37 8.48 -92.71 -0.79 9.59 16 34 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.08 2.64 7.94 -2.39 -0.02 2.62 16 37 H 0.04 1.77 3.32 -2.39 -0.01 1.76 16 38 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.07 2.26 7.11 -2.38 -0.02 2.24 16 40 H 0.04 1.64 6.77 -2.39 -0.02 1.63 16 41 H 0.03 1.41 8.13 -2.39 -0.02 1.39 16 42 H 0.07 1.71 6.63 -2.39 -0.02 1.69 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 45 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.04 1.17 6.63 -2.39 -0.02 1.15 16 48 H 0.08 1.74 6.98 -2.39 -0.02 1.72 16 49 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 51 H 0.04 1.60 6.94 -2.39 -0.02 1.58 16 52 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 53 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 54 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 55 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -78.77 421.33 2.40 -76.37 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.03 Total: 30.96 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 5.88 Total: 1.00 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -3.58 Total: -114.22 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -1.64 Total: -40.33 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.71 Total: 46.23 kcal Total: -78.77 2.40 -76.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716713969.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.345 kcal (2) G-P(sol) polarization free energy of solvation -78.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds