Wall clock time and date at job start Tue Mar 31 2020 22:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00401 * 2 1 4 4 C 1.52997 * 109.47522 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47546 * 185.09356 * 4 3 2 6 6 C 1.50699 * 112.84642 * 303.97661 * 5 4 3 7 7 O 1.21282 * 120.00116 * 103.76510 * 6 5 4 8 8 N 1.34781 * 119.99980 * 283.76906 * 6 5 4 9 9 C 1.46504 * 119.99851 * 185.11265 * 8 6 5 10 10 H 1.09003 * 109.46866 * 331.42047 * 9 8 6 11 11 C 1.53005 * 109.46691 * 211.42696 * 9 8 6 12 12 N 1.46499 * 109.47494 * 55.00039 * 11 9 8 13 13 C 1.36932 * 120.00051 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00120 * 359.97438 * 13 12 11 15 15 C 1.38813 * 120.00074 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99880 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99943 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47326 * 89.99806 * 17 15 13 19 19 H 1.48504 * 109.47021 * 209.99649 * 17 15 13 20 20 H 1.48503 * 109.47120 * 329.99608 * 17 15 13 21 21 C 1.53001 * 109.47422 * 91.42481 * 9 8 6 22 22 C 1.54883 * 110.48787 * 179.63087 * 21 9 8 23 23 C 1.54885 * 102.75123 * 156.61886 * 22 21 9 24 24 C 1.54266 * 104.19316 * 322.06109 * 23 22 21 25 25 C 1.53872 * 106.60214 * 23.60470 * 24 23 22 26 26 C 1.53777 * 113.68933 * 75.24015 * 5 4 3 27 27 C 1.53786 * 87.07809 * 89.13270 * 26 5 4 28 28 C 1.53775 * 87.08153 * 25.43139 * 27 26 5 29 29 H 1.08999 * 109.47240 * 299.99972 * 1 2 3 30 30 H 1.09000 * 109.47242 * 59.99717 * 1 2 3 31 31 H 1.08994 * 109.47157 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46500 * 60.00017 * 3 2 1 33 33 H 1.08995 * 109.46793 * 300.00256 * 3 2 1 34 34 H 1.09007 * 109.46941 * 65.09307 * 4 3 2 35 35 H 1.09002 * 109.47066 * 305.09934 * 4 3 2 36 36 H 0.96991 * 120.00035 * 5.10844 * 8 6 5 37 37 H 1.09001 * 109.47062 * 174.99865 * 11 9 8 38 38 H 1.08997 * 109.46946 * 294.99519 * 11 9 8 39 39 H 0.97002 * 119.99569 * 359.97438 * 12 11 9 40 40 H 0.96993 * 119.99864 * 180.02562 * 16 15 13 41 41 H 1.09002 * 110.53492 * 57.01738 * 21 9 8 42 42 H 1.09000 * 110.75509 * 274.93772 * 22 21 9 43 43 H 1.09003 * 110.75801 * 38.30474 * 22 21 9 44 44 H 1.09000 * 110.49069 * 203.37721 * 23 22 21 45 45 H 1.09003 * 110.48222 * 80.73532 * 23 22 21 46 46 H 1.09008 * 110.03177 * 264.31884 * 24 23 22 47 47 H 1.09008 * 110.07316 * 142.91779 * 24 23 22 48 48 H 1.08991 * 110.03586 * 240.71662 * 25 24 23 49 49 H 1.09005 * 110.03099 * 119.28662 * 25 24 23 50 50 H 1.09001 * 113.61208 * 203.67963 * 26 5 4 51 51 H 1.08998 * 113.61577 * 334.58270 * 26 5 4 52 52 H 1.09001 * 113.61162 * 270.88184 * 27 26 5 53 53 H 1.08994 * 113.61204 * 139.98251 * 27 26 5 54 54 H 1.09001 * 113.61310 * 220.02052 * 28 27 26 55 55 H 1.09003 * 113.61369 * 89.11484 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1574 2.5766 0.1287 6 6 3.6947 3.5254 -0.9468 7 8 2.8739 4.3803 -0.6892 8 7 4.1929 3.4238 -2.1950 9 6 3.8291 4.4139 -3.2118 10 1 2.8393 4.8138 -2.9916 11 6 3.8154 3.7485 -4.5895 12 7 2.9248 2.5856 -4.5615 13 6 2.7526 1.8277 -5.6889 14 1 3.2731 2.0875 -6.5988 15 6 1.9092 0.7256 -5.6622 16 7 1.2753 0.4087 -4.5530 17 14 1.6738 -0.3079 -7.2003 18 1 2.6857 -1.3945 -7.2263 19 1 0.3119 -0.8998 -7.1954 20 1 1.8368 0.5491 -8.4022 21 6 4.8520 5.5516 -3.2049 22 6 4.4944 6.6086 -4.2791 23 6 5.1928 7.8851 -3.7484 24 6 5.0036 7.8118 -2.2191 25 6 4.7868 6.3281 -1.8736 26 6 4.0706 3.1639 1.5473 27 6 5.4180 2.4781 1.8286 28 6 5.6835 2.5547 0.3159 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8899 34 1 3.8639 0.7243 -0.9313 35 1 3.8507 0.5670 0.8417 36 1 4.7924 2.6953 -2.4201 37 1 3.4592 4.4610 -5.3335 38 1 4.8244 3.4273 -4.8479 39 1 2.4577 2.3522 -3.7440 40 1 0.6863 -0.3616 -4.5342 41 1 5.8569 5.1633 -3.3714 42 1 4.8974 6.3234 -5.2509 43 1 3.4155 6.7533 -4.3346 44 1 4.7128 8.7776 -4.1499 45 1 6.2527 7.8737 -4.0026 46 1 4.1321 8.3955 -1.9223 47 1 5.8936 8.1868 -1.7136 48 1 3.8103 6.1917 -1.4091 49 1 5.5721 5.9828 -1.2011 50 1 4.1210 4.2525 1.5729 51 1 3.2454 2.7634 2.1360 52 1 5.3194 1.4594 2.2036 53 1 6.1010 3.0848 2.4231 54 1 6.1604 1.6622 -0.0894 55 1 6.1749 3.4767 0.0050 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716824513.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:37 Heat of formation + Delta-G solvation = -95.323425 kcal Electronic energy + Delta-G solvation = -32187.269461 eV Core-core repulsion = 28223.318241 eV Total energy + Delta-G solvation = -3963.951219 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.85101 -39.96126 -38.70058 -38.21908 -36.92869 -35.18268 -33.05459 -32.48900 -31.06921 -29.53506 -28.05441 -27.67942 -26.70270 -26.26982 -25.03655 -23.79416 -22.89991 -21.79513 -21.19246 -20.86899 -19.65709 -19.05150 -17.99433 -17.50013 -17.43931 -16.97225 -16.76185 -16.40487 -16.27402 -16.08668 -15.74926 -15.43797 -15.15478 -15.06391 -14.83357 -14.38219 -14.21956 -14.05382 -13.79056 -13.43817 -13.36901 -13.17562 -13.03286 -12.83590 -12.64148 -12.57541 -12.35092 -12.31930 -12.15082 -12.11484 -12.03428 -11.99058 -11.89304 -11.81274 -11.57895 -11.43611 -11.37372 -11.28030 -11.17598 -10.95462 -10.65032 -10.39169 -9.84344 -8.98467 -7.91164 -5.21055 1.46855 1.48023 1.56287 1.72964 2.29957 2.56221 2.72243 3.41526 3.42134 3.54739 3.64203 3.70944 3.81234 3.89813 3.90758 4.00149 4.11516 4.14307 4.18000 4.27932 4.36329 4.41233 4.44207 4.53550 4.59492 4.62552 4.65896 4.71851 4.74139 4.78199 4.80373 4.81703 4.82969 4.88524 4.93605 4.96288 4.99502 5.04624 5.10787 5.13176 5.15400 5.19487 5.27916 5.28907 5.35468 5.50848 5.51262 5.51606 5.54288 5.70723 6.16370 6.27428 6.66964 7.35078 7.36534 8.09128 8.33253 9.30563 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006924 B = 0.005416 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4042.823329 B = 5168.180113 C = 8351.719125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.407 6.407 3 C 0.071 3.929 4 C -0.078 4.078 5 C -0.106 4.106 6 C 0.530 3.470 7 O -0.578 6.578 8 N -0.705 5.705 9 C 0.155 3.845 10 H 0.055 0.945 11 C 0.147 3.853 12 N -0.741 5.741 13 C -0.245 4.245 14 H 0.076 0.924 15 C -0.070 4.070 16 N -0.960 5.960 17 Si 0.969 3.031 18 H -0.286 1.286 19 H -0.300 1.300 20 H -0.271 1.271 21 C -0.088 4.088 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.114 4.114 27 C -0.124 4.124 28 C -0.117 4.117 29 H 0.058 0.942 30 H 0.022 0.978 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.013 0.987 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.405 0.595 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.372 0.628 40 H 0.248 0.752 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.055 0.945 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.057 0.943 50 H 0.079 0.921 51 H 0.071 0.929 52 H 0.096 0.904 53 H 0.088 0.912 54 H 0.088 0.912 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.470 8.650 12.166 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.326 6.326 3 C -0.005 4.005 4 C -0.116 4.116 5 C -0.109 4.109 6 C 0.318 3.682 7 O -0.458 6.458 8 N -0.354 5.354 9 C 0.050 3.950 10 H 0.073 0.927 11 C 0.020 3.980 12 N -0.384 5.384 13 C -0.377 4.377 14 H 0.094 0.906 15 C -0.263 4.263 16 N -0.610 5.610 17 Si 0.799 3.201 18 H -0.213 1.213 19 H -0.227 1.227 20 H -0.196 1.196 21 C -0.108 4.108 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.158 4.158 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.161 4.161 28 C -0.155 4.155 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.240 0.760 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.204 0.796 40 H 0.057 0.943 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.097 0.903 51 H 0.089 0.911 52 H 0.114 0.886 53 H 0.106 0.894 54 H 0.107 0.893 55 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.038 9.075 12.149 18.756 hybrid contribution -1.140 -0.929 -0.990 1.773 sum 9.897 8.146 11.160 16.995 Atomic orbital electron populations 1.22808 0.80060 1.03623 0.99864 1.87768 1.21056 1.28353 1.95421 1.22385 0.94993 0.84172 0.98993 1.21137 0.91992 0.94381 1.04091 1.22133 0.99705 0.94104 0.94952 1.20766 0.79767 0.84247 0.83457 1.90608 1.34093 1.38798 1.82295 1.45893 1.49686 1.29909 1.09871 1.21116 0.98070 0.88829 0.87023 0.92682 1.21110 0.93801 0.88744 0.94380 1.42489 1.53695 1.30563 1.11606 1.19572 1.21160 1.05625 0.91355 0.90571 1.25510 1.00335 1.00594 0.99839 1.69843 1.34061 1.29472 1.27602 0.85208 0.76336 0.78874 0.79697 1.21339 1.22678 1.19559 1.22284 0.98526 0.93886 0.96101 1.22534 1.00179 0.94893 0.98101 1.22320 1.01047 0.97222 0.94717 1.22116 1.01543 0.95479 0.96682 1.22218 1.01556 0.95339 0.96533 1.22854 0.99405 1.00462 0.92426 1.22802 0.95887 1.01910 0.95473 1.22975 0.90960 1.03696 0.97838 0.92389 0.95927 0.88101 0.92491 0.96880 0.91776 0.87760 0.76001 0.94827 0.94673 0.79584 0.94336 0.89441 0.90647 0.92813 0.90991 0.90372 0.92645 0.90799 0.92671 0.92401 0.90273 0.91056 0.88589 0.89365 0.89339 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 11.01 113.37 1.25 2.29 16 2 O -0.41 -15.05 10.70 -148.98 -1.59 -16.64 16 3 C 0.07 2.50 5.54 71.98 0.40 2.90 16 4 C -0.08 -2.25 4.95 30.59 0.15 -2.10 16 5 C -0.11 -2.70 0.80 -52.41 -0.04 -2.75 16 6 C 0.53 17.36 4.89 87.66 0.43 17.79 16 7 O -0.58 -22.73 13.86 -3.04 -0.04 -22.77 16 8 N -0.70 -22.70 4.31 -442.51 -1.91 -24.61 16 9 C 0.15 5.26 1.86 44.99 0.08 5.34 16 10 H 0.05 2.27 7.24 -2.39 -0.02 2.25 16 11 C 0.15 5.72 5.53 86.38 0.48 6.19 16 12 N -0.74 -37.46 5.43 -343.45 -1.87 -39.33 16 13 C -0.25 -13.60 9.99 84.03 0.84 -12.76 16 14 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 15 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 16 N -0.96 -59.13 13.06 21.65 0.28 -58.85 16 17 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 18 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 19 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 C -0.09 -2.31 2.64 -9.72 -0.03 -2.34 16 22 C -0.12 -2.87 5.24 31.88 0.17 -2.71 16 23 C -0.12 -2.23 6.83 31.67 0.22 -2.02 16 24 C -0.12 -2.53 6.80 31.32 0.21 -2.32 16 25 C -0.12 -3.06 5.52 31.32 0.17 -2.89 16 26 C -0.11 -2.49 6.73 31.12 0.21 -2.29 16 27 C -0.12 -1.93 7.73 31.12 0.24 -1.69 16 28 C -0.12 -2.16 7.12 31.12 0.22 -1.94 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.06 1.81 7.31 -2.39 -0.02 1.79 16 33 H 0.01 0.56 7.50 -2.39 -0.02 0.54 16 34 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.10 2.47 7.31 -2.39 -0.02 2.45 16 36 H 0.41 12.46 8.63 -92.71 -0.80 11.66 16 37 H 0.03 1.33 7.41 -2.39 -0.02 1.31 16 38 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.37 20.68 7.33 -92.71 -0.68 20.00 16 40 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 43 H 0.05 1.47 8.06 -2.39 -0.02 1.45 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 47 H 0.07 1.30 8.14 -2.38 -0.02 1.29 16 48 H 0.05 1.79 5.61 -2.39 -0.01 1.78 16 49 H 0.06 1.39 8.14 -2.38 -0.02 1.38 16 50 H 0.08 1.89 7.93 -2.39 -0.02 1.87 16 51 H 0.07 1.56 7.40 -2.39 -0.02 1.55 16 52 H 0.10 1.31 7.61 -2.39 -0.02 1.29 16 53 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 54 H 0.09 1.46 8.10 -2.39 -0.02 1.45 16 55 H 0.09 1.60 8.09 -2.39 -0.02 1.58 16 Total: -1.00 -69.76 424.42 1.75 -68.01 By element: Atomic # 1 Polarization: 51.21 SS G_CDS: -0.62 Total: 50.59 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.47 Total: -4.84 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -3.49 Total: -122.78 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -1.64 Total: -39.41 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -69.76 1.75 -68.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716824513.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.315 kcal (2) G-P(sol) polarization free energy of solvation -69.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds