Wall clock time and date at job start Tue Mar 31 2020 22:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00159 * 2 1 4 4 C 1.53004 * 109.46972 * 210.00367 * 3 2 1 5 5 C 1.53005 * 109.46987 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47314 * 59.99831 * 5 4 3 7 7 C 1.50701 * 109.47333 * 59.99790 * 6 5 4 8 8 O 1.21278 * 119.99645 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00237 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00347 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46555 * 35.00237 * 10 9 7 12 12 C 1.52998 * 109.47027 * 154.99644 * 10 9 7 13 13 C 1.53001 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47270 * 300.00468 * 13 12 10 15 15 H 1.09003 * 109.46949 * 299.99964 * 14 13 12 16 16 C 1.52998 * 109.47394 * 179.97438 * 14 13 12 17 17 N 1.46492 * 109.47482 * 174.99762 * 16 14 13 18 18 C 1.36935 * 120.00376 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99724 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00063 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99887 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00212 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99941 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00122 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00115 * 22 20 18 26 26 C 1.52997 * 109.46899 * 59.99623 * 14 13 12 27 27 C 1.52992 * 109.47310 * 275.00249 * 10 9 7 28 28 C 1.53002 * 109.46873 * 300.00112 * 6 5 4 29 29 C 1.52993 * 109.47551 * 59.99848 * 28 6 5 30 30 H 1.08998 * 109.47225 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47413 * 300.00147 * 1 2 3 32 32 H 1.09001 * 109.47334 * 60.00068 * 1 2 3 33 33 H 1.09001 * 109.47132 * 329.99682 * 3 2 1 34 34 H 1.08997 * 109.47471 * 59.99824 * 4 3 2 35 35 H 1.09001 * 109.46633 * 299.99621 * 4 3 2 36 36 H 1.09001 * 109.47165 * 299.99345 * 5 4 3 37 37 H 1.09003 * 109.47033 * 179.97438 * 5 4 3 38 38 H 1.08994 * 109.47100 * 180.02562 * 6 5 4 39 39 H 0.97010 * 119.99670 * 359.97438 * 9 7 6 40 40 H 1.09000 * 109.46969 * 60.00846 * 12 10 9 41 41 H 1.08994 * 109.47780 * 300.00669 * 12 10 9 42 42 H 1.08996 * 109.47228 * 180.02562 * 13 12 10 43 43 H 1.09003 * 109.47105 * 60.00336 * 13 12 10 44 44 H 1.08999 * 109.46602 * 54.99881 * 16 14 13 45 45 H 1.08998 * 109.47239 * 295.00532 * 16 14 13 46 46 H 0.97009 * 119.99477 * 0.02562 * 17 16 14 47 47 H 0.97006 * 119.99732 * 180.02562 * 21 20 18 48 48 H 1.09003 * 109.47041 * 60.00398 * 26 14 13 49 49 H 1.09002 * 109.47210 * 180.02562 * 26 14 13 50 50 H 1.09003 * 109.46944 * 299.99897 * 27 10 9 51 51 H 1.08998 * 109.47510 * 59.99585 * 27 10 9 52 52 H 1.08995 * 109.47269 * 180.02562 * 28 6 5 53 53 H 1.09003 * 109.47241 * 300.00079 * 28 6 5 54 54 H 1.09000 * 109.47698 * 179.97438 * 29 28 6 55 55 H 1.09001 * 109.47014 * 60.00276 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2631 -0.7214 5 6 3.9809 2.6610 -0.7219 6 6 4.1884 3.1275 0.7204 7 6 5.1083 2.1686 1.4312 8 8 5.5545 1.2070 0.8420 9 7 5.4352 2.3796 2.7215 10 6 6.3290 1.4471 3.4127 11 1 7.0766 1.0741 2.7126 12 6 7.0268 2.1700 4.5665 13 6 7.9608 1.1964 5.2880 14 6 7.1478 0.0229 5.8385 15 1 6.4002 0.3957 6.5388 16 6 8.0818 -0.9511 6.5594 17 7 7.2906 -2.0115 7.1884 18 6 7.9151 -3.0040 7.8955 19 1 8.9910 -3.0048 7.9898 20 6 7.1654 -4.0091 8.4910 21 7 7.7657 -4.9628 9.1710 22 14 5.3045 -4.0072 8.3285 23 1 4.9125 -4.7737 7.1184 24 1 4.8195 -2.6089 8.2073 25 1 4.7020 -4.6377 9.5304 26 6 6.4501 -0.6999 4.6846 27 6 5.5156 0.2741 3.9632 28 6 2.8397 3.1697 1.4416 29 6 2.2176 1.7720 1.4422 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.3450 1.9993 -0.5139 34 1 3.2111 0.9312 -1.7490 35 1 4.0241 0.5692 -0.2075 36 1 3.3156 3.3546 -1.2361 37 1 4.9420 2.6308 -1.2354 38 1 4.6311 4.1235 0.7199 39 1 5.0786 3.1490 3.1926 40 1 6.2793 2.5431 5.2666 41 1 7.6063 3.0057 4.1744 42 1 8.4576 1.7113 6.1103 43 1 8.7084 0.8236 4.5877 44 1 8.6449 -0.4158 7.3240 45 1 8.7730 -1.3911 5.8406 46 1 6.3242 -2.0105 7.1040 47 1 7.2418 -5.6654 9.5869 48 1 7.1976 -1.0726 3.9843 49 1 5.8705 -1.5356 5.0768 50 1 4.7680 0.6472 4.6632 51 1 5.0185 -0.2409 3.1412 52 1 2.9873 3.5025 2.4690 53 1 2.1742 3.8633 0.9275 54 1 1.2570 1.8020 1.9565 55 1 2.8830 1.0784 1.9564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717122466.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:22 Heat of formation + Delta-G solvation = -128.966779 kcal Electronic energy + Delta-G solvation = -30905.126860 eV Core-core repulsion = 26939.716755 eV Total energy + Delta-G solvation = -3965.410105 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.69342 -40.08767 -39.12091 -37.13230 -36.64328 -35.17370 -33.44373 -31.88476 -31.75100 -31.41909 -30.40369 -27.51142 -26.84045 -24.61911 -24.04210 -23.64113 -23.33459 -22.26191 -21.70035 -21.13932 -20.18382 -19.63866 -17.70576 -17.67280 -17.33930 -16.79023 -16.62791 -16.12310 -16.07118 -15.94558 -15.83171 -15.27098 -15.00341 -14.90423 -14.70732 -14.64885 -14.42879 -14.05201 -13.95847 -13.71097 -13.43836 -13.24528 -13.16065 -13.10877 -12.97798 -12.86454 -12.83503 -12.54985 -12.17400 -12.09498 -12.04225 -12.00849 -11.88273 -11.75499 -11.48939 -11.47527 -11.37760 -11.23530 -11.17169 -10.96960 -10.41951 -10.38003 -9.93859 -9.30256 -8.05374 -5.37942 1.33465 1.37764 1.44489 1.75267 2.26338 2.45393 2.84658 3.25997 3.57439 3.63033 3.69474 3.72327 3.83864 3.87697 3.97970 4.05834 4.14438 4.15079 4.27241 4.35780 4.38085 4.43675 4.46078 4.48832 4.50939 4.51578 4.55280 4.57338 4.57605 4.77979 4.80508 4.81219 4.91038 4.92528 5.03233 5.04848 5.07009 5.09008 5.12139 5.18437 5.20665 5.22716 5.24739 5.28844 5.32653 5.46405 5.47193 5.57517 5.67004 5.73809 6.19551 6.34174 6.68435 7.06029 7.41515 7.83327 8.02349 9.16536 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012575 B = 0.002667 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.057788 B =10497.955168 C =12106.711696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.089 3.911 4 C -0.133 4.133 5 C -0.091 4.091 6 C -0.105 4.105 7 C 0.511 3.489 8 O -0.578 6.578 9 N -0.714 5.714 10 C 0.151 3.849 11 H 0.063 0.937 12 C -0.110 4.110 13 C -0.103 4.103 14 C -0.086 4.086 15 H 0.076 0.924 16 C 0.156 3.844 17 N -0.758 5.758 18 C -0.235 4.235 19 H 0.056 0.944 20 C -0.065 4.065 21 N -0.984 5.984 22 Si 0.953 3.047 23 H -0.282 1.282 24 H -0.250 1.250 25 H -0.291 1.291 26 C -0.107 4.107 27 C -0.115 4.115 28 C -0.100 4.100 29 C -0.145 4.145 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.133 0.867 39 H 0.415 0.585 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.028 0.972 45 H 0.017 0.983 46 H 0.365 0.635 47 H 0.258 0.742 48 H 0.051 0.949 49 H 0.043 0.957 50 H 0.073 0.927 51 H 0.039 0.961 52 H 0.089 0.911 53 H 0.103 0.897 54 H 0.073 0.927 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.249 28.308 -20.970 38.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C 0.032 3.968 4 C -0.170 4.170 5 C -0.129 4.129 6 C -0.126 4.126 7 C 0.299 3.701 8 O -0.458 6.458 9 N -0.366 5.366 10 C 0.046 3.954 11 H 0.081 0.919 12 C -0.148 4.148 13 C -0.142 4.142 14 C -0.104 4.104 15 H 0.094 0.906 16 C 0.030 3.970 17 N -0.404 5.404 18 C -0.366 4.366 19 H 0.074 0.926 20 C -0.256 4.256 21 N -0.635 5.635 22 Si 0.780 3.220 23 H -0.208 1.208 24 H -0.175 1.175 25 H -0.218 1.218 26 C -0.145 4.145 27 C -0.154 4.154 28 C -0.138 4.138 29 C -0.183 4.183 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.151 0.849 39 H 0.252 0.748 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.035 0.965 46 H 0.199 0.801 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.062 0.938 50 H 0.091 0.909 51 H 0.058 0.942 52 H 0.108 0.892 53 H 0.122 0.878 54 H 0.092 0.908 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.630 27.384 -21.304 37.654 hybrid contribution -0.955 -0.997 0.497 1.467 sum -15.585 26.387 -20.807 37.041 Atomic orbital electron populations 1.22926 0.79904 1.03339 1.00876 1.87931 1.21214 1.29585 1.95226 1.22285 0.94803 0.83963 0.95777 1.21800 0.95627 0.99393 1.00191 1.21293 1.01403 0.95332 0.94830 1.21496 0.95712 0.99764 0.95653 1.21275 0.80819 0.86109 0.81923 1.90663 1.55476 1.32520 1.67127 1.45999 1.49578 1.29226 1.11753 1.20817 0.91324 0.89354 0.93863 0.91910 1.21703 0.99140 0.97958 0.95986 1.21433 0.97615 0.94815 1.00312 1.21298 0.97562 0.95324 0.96252 0.90598 1.20878 0.93579 0.88372 0.94195 1.42764 1.05164 1.28832 1.63615 1.19077 0.92413 1.01507 1.23560 0.92637 1.25508 1.02742 0.97080 1.00305 1.69888 1.36440 1.16105 1.41091 0.85438 0.80812 0.78707 0.77056 1.20813 1.17493 1.21778 1.21456 0.98433 0.97668 0.96983 1.21794 0.98191 0.96387 0.99030 1.21531 0.94214 0.95976 1.02037 1.22064 1.01443 0.97849 0.96899 0.89595 0.93226 0.92620 0.90170 0.92329 0.92046 0.88341 0.91887 0.84948 0.74829 0.89631 0.89263 0.89908 0.92010 0.95437 0.96504 0.80143 0.93299 0.93006 0.93790 0.90856 0.94165 0.89228 0.87827 0.90823 0.94261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.82 113.37 1.23 1.60 16 2 O -0.42 -9.52 10.35 -148.98 -1.54 -11.06 16 3 C 0.09 1.52 2.61 30.59 0.08 1.60 16 4 C -0.13 -2.65 5.28 30.60 0.16 -2.49 16 5 C -0.09 -1.19 5.09 30.60 0.16 -1.03 16 6 C -0.11 -1.10 3.01 -11.54 -0.03 -1.14 16 7 C 0.51 9.72 5.61 87.66 0.49 10.21 16 8 O -0.58 -17.06 13.32 -3.02 -0.04 -17.10 16 9 N -0.71 -10.70 4.97 -442.56 -2.20 -12.90 16 10 C 0.15 3.05 2.45 44.99 0.11 3.16 16 11 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 12 C -0.11 -1.68 5.39 30.59 0.16 -1.52 16 13 C -0.10 -2.17 5.20 30.60 0.16 -2.01 16 14 C -0.09 -2.46 2.23 -10.79 -0.02 -2.48 16 15 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 16 C 0.16 6.08 5.65 86.38 0.49 6.57 16 17 N -0.76 -36.97 5.13 -343.48 -1.76 -38.74 16 18 C -0.23 -13.97 10.47 84.03 0.88 -13.09 16 19 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 20 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 21 N -0.98 -65.03 13.97 21.65 0.30 -64.72 16 22 Si 0.95 47.18 27.73 68.60 1.90 49.08 16 23 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.25 -11.15 6.52 99.48 0.65 -10.50 16 25 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 26 C -0.11 -3.27 5.08 30.61 0.16 -3.12 16 27 C -0.12 -2.91 5.50 30.61 0.17 -2.74 16 28 C -0.10 -0.74 5.35 30.59 0.16 -0.58 16 29 C -0.14 -2.18 5.32 30.59 0.16 -2.01 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 0.60 7.87 -2.39 -0.02 0.58 16 32 H 0.06 0.60 8.09 -2.39 -0.02 0.58 16 33 H 0.08 0.96 7.79 -2.39 -0.02 0.94 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.77 5.51 -2.39 -0.01 1.76 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 38 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.41 3.18 8.02 -92.70 -0.74 2.44 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.37 17.03 4.71 -92.70 -0.44 16.59 16 47 H 0.26 16.18 8.31 -92.70 -0.77 15.41 16 48 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.04 1.54 7.18 -2.39 -0.02 1.53 16 50 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.09 0.38 7.56 -2.39 -0.02 0.36 16 53 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 54 H 0.07 0.97 7.87 -2.39 -0.02 0.95 16 55 H 0.04 0.87 7.22 -2.39 -0.02 0.85 16 Total: -1.00 -81.33 412.77 1.25 -80.08 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -0.38 Total: 27.93 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 4.98 Total: -12.57 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -3.66 Total: -116.36 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -1.58 Total: -28.16 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.90 Total: 49.08 kcal Total: -81.33 1.25 -80.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717122466.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.889 kcal (2) G-P(sol) polarization free energy of solvation -81.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds