Wall clock time and date at job start Tue Mar 31 2020 22:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36932 * 120.00179 * 2 1 4 4 H 1.08004 * 119.99916 * 202.19717 * 3 2 1 5 5 C 1.38809 * 120.00322 * 22.19518 * 3 2 1 6 6 N 1.31617 * 119.99756 * 11.24492 * 5 3 2 7 7 Si 1.86795 * 120.00335 * 191.25207 * 5 3 2 8 8 H 1.48498 * 109.47327 * 59.99721 * 7 5 3 9 9 H 1.48504 * 109.47230 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46920 * 299.99893 * 7 5 3 11 11 C 1.46504 * 119.99984 * 179.97438 * 2 1 3 12 12 C 1.53007 * 109.47024 * 270.00180 * 11 2 1 13 13 C 1.52997 * 109.46768 * 179.97438 * 12 11 2 14 14 N 1.46505 * 109.46973 * 179.97438 * 13 12 11 15 15 C 1.46495 * 120.00076 * 270.00029 * 14 13 12 16 16 C 1.34778 * 119.99984 * 89.99857 * 14 13 12 17 17 O 1.21278 * 119.99711 * 3.82128 * 16 14 13 18 18 C 1.50699 * 119.99938 * 183.81377 * 16 14 13 19 19 C 1.52999 * 112.84657 * 81.32087 * 18 16 14 20 20 H 1.09003 * 109.48559 * 184.86245 * 19 18 16 21 21 C 1.53084 * 109.48244 * 64.83400 * 19 18 16 22 22 C 1.53185 * 109.21610 * 182.43904 * 21 19 18 23 23 C 1.53178 * 109.02865 * 56.88384 * 22 21 19 24 24 C 1.53090 * 109.21661 * 303.11637 * 23 22 21 25 25 O 1.42897 * 109.48091 * 304.88754 * 19 18 16 26 26 C 1.53785 * 113.61021 * 212.51436 * 18 16 14 27 27 C 1.53954 * 87.01737 * 89.23202 * 26 18 16 28 28 C 1.53776 * 87.11558 * 25.36203 * 27 26 18 29 29 H 1.09000 * 109.46982 * 273.37185 * 1 2 3 30 30 H 1.08997 * 109.46761 * 33.37089 * 1 2 3 31 31 H 1.08998 * 109.47014 * 153.37687 * 1 2 3 32 32 H 0.97003 * 120.00547 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47100 * 150.00139 * 11 2 1 34 34 H 1.09004 * 109.47252 * 29.99910 * 11 2 1 35 35 H 1.08999 * 109.47216 * 60.00030 * 12 11 2 36 36 H 1.08999 * 109.46927 * 299.99455 * 12 11 2 37 37 H 1.09004 * 109.47501 * 59.99946 * 13 12 11 38 38 H 1.08997 * 109.47527 * 300.00144 * 13 12 11 39 39 H 1.09002 * 109.47693 * 274.53452 * 15 14 13 40 40 H 1.09007 * 109.47049 * 34.53851 * 15 14 13 41 41 H 1.09000 * 109.47232 * 154.53000 * 15 14 13 42 42 H 1.09004 * 109.52332 * 302.31396 * 21 19 18 43 43 H 1.08999 * 109.52495 * 62.50263 * 21 19 18 44 44 H 1.09001 * 109.49412 * 297.05242 * 22 21 19 45 45 H 1.09001 * 109.60331 * 176.78106 * 22 21 19 46 46 H 1.09008 * 109.52612 * 183.17445 * 23 22 21 47 47 H 1.09008 * 109.52474 * 63.05441 * 23 22 21 48 48 H 1.09000 * 109.48132 * 177.56062 * 24 23 22 49 49 H 1.08996 * 109.47837 * 297.57704 * 24 23 22 50 50 H 1.09000 * 113.60595 * 203.75131 * 26 18 16 51 51 H 1.08997 * 113.61832 * 334.64727 * 26 18 16 52 52 H 1.08994 * 113.53727 * 270.80255 * 27 26 18 53 53 H 1.09004 * 113.66531 * 139.93386 * 27 26 18 54 54 H 1.09001 * 113.61853 * 220.09403 * 28 27 26 55 55 H 1.09001 * 113.69614 * 89.19482 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1697 1.2205 -0.3534 5 6 1.5329 2.3435 0.4541 6 7 0.3808 2.2707 1.0864 7 14 2.3377 4.0047 0.1677 8 1 2.4981 4.2322 -1.2909 9 1 1.4846 5.0742 0.7452 10 1 3.6707 4.0282 0.8218 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7098 1.4433 13 6 3.2169 -3.0351 1.4439 14 7 3.4616 -3.4572 2.8253 15 6 4.6829 -3.0343 3.5150 16 6 2.5630 -4.2345 3.4617 17 8 1.5863 -4.6417 2.8693 18 6 2.7722 -4.5977 4.9092 19 6 2.3271 -3.4926 5.8692 20 1 2.5809 -3.7747 6.8911 21 6 0.8132 -3.2962 5.7548 22 6 0.3830 -2.1480 6.6731 23 6 1.1646 -0.8861 6.2945 24 6 2.6649 -1.1757 6.3881 25 8 2.9912 -2.2729 5.5327 26 6 2.2327 -5.9894 5.2792 27 6 3.6157 -6.5411 4.8879 28 6 4.1771 -5.1461 5.2100 29 1 -0.3633 0.0604 1.0259 30 1 -0.3633 0.8582 -0.5653 31 1 -0.3633 -0.9187 -0.4605 32 1 -0.0501 3.0796 1.4041 33 1 3.1499 -1.1387 -0.5133 34 1 1.6084 -2.0287 -0.5129 35 1 1.5001 -1.8399 1.9572 36 1 3.0416 -0.9500 1.9568 37 1 4.1694 -2.9055 0.9298 38 1 2.6275 -3.7948 0.9305 39 1 5.4917 -3.7257 3.2786 40 1 4.9557 -2.0307 3.1884 41 1 4.5101 -3.0316 4.5912 42 1 0.5542 -3.0537 4.7242 43 1 0.3034 -4.2121 6.0537 44 1 0.5957 -2.4115 7.7091 45 1 -0.6849 -1.9649 6.5539 46 1 0.9061 -0.0783 6.9793 47 1 0.9129 -0.5938 5.2750 48 1 3.2254 -0.2938 6.0779 49 1 2.9231 -1.4272 7.4167 50 1 2.0020 -6.1007 6.3387 51 1 1.4258 -6.3314 4.6311 52 1 3.6946 -6.8111 3.8349 53 1 3.9796 -7.3228 5.5547 54 1 4.9376 -4.8082 4.5060 55 1 4.4795 -5.0251 6.2501 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717208594.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:46 Heat of formation + Delta-G solvation = -53.621856 kcal Electronic energy + Delta-G solvation = -32634.506884 eV Core-core repulsion = 28672.363980 eV Total energy + Delta-G solvation = -3962.142904 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.25288 -39.90064 -38.54778 -37.80295 -36.70686 -34.65216 -34.01605 -32.39982 -31.99682 -28.44173 -28.05222 -27.91455 -26.63383 -26.42830 -25.06551 -24.27689 -23.30609 -22.16590 -21.66481 -20.95112 -19.45719 -18.78646 -17.95086 -17.51364 -17.22087 -16.85264 -16.48801 -16.42212 -15.97758 -15.66605 -15.58104 -15.51213 -15.23944 -15.01030 -14.60664 -14.49280 -14.20893 -14.04159 -13.94335 -13.63698 -13.34408 -13.17688 -13.05316 -12.97905 -12.77176 -12.68779 -12.53181 -12.46441 -12.43606 -12.29039 -12.09346 -12.06328 -12.03138 -11.89165 -11.81224 -11.45216 -11.40672 -11.16723 -11.05852 -10.67085 -10.60824 -10.31402 -9.57869 -8.80583 -7.83439 -5.32041 1.44284 1.47875 1.54376 1.64579 2.13406 2.50514 2.64785 3.30828 3.40498 3.53454 3.62829 3.68166 3.79756 3.88910 3.91115 3.95749 4.03444 4.08702 4.16914 4.27451 4.35534 4.40546 4.48613 4.51200 4.53966 4.59821 4.69081 4.71533 4.74998 4.75996 4.79477 4.81627 4.84004 4.85322 4.89771 4.95891 5.07246 5.09320 5.10660 5.15540 5.20202 5.23161 5.23863 5.26452 5.36342 5.42468 5.45874 5.60796 5.64149 5.67058 6.27517 6.31172 6.51267 7.12593 7.25391 7.84357 8.30876 9.21326 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.003688 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.344587 B = 7591.149030 C = 8479.572810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.620 5.620 3 C -0.263 4.263 4 H 0.076 0.924 5 C -0.056 4.056 6 N -0.943 5.943 7 Si 0.973 3.027 8 H -0.276 1.276 9 H -0.295 1.295 10 H -0.272 1.272 11 C 0.152 3.848 12 C -0.118 4.118 13 C 0.124 3.876 14 N -0.603 5.603 15 C 0.069 3.931 16 C 0.538 3.462 17 O -0.592 6.592 18 C -0.106 4.106 19 C 0.116 3.884 20 H 0.105 0.895 21 C -0.149 4.149 22 C -0.114 4.114 23 C -0.160 4.160 24 C 0.063 3.937 25 O -0.386 6.386 26 C -0.113 4.113 27 C -0.137 4.137 28 C -0.128 4.128 29 H -0.009 1.009 30 H 0.024 0.976 31 H 0.021 0.979 32 H 0.246 0.754 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.011 0.989 36 H 0.039 0.961 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.110 0.890 42 H 0.021 0.979 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.024 0.976 48 H 0.088 0.912 49 H 0.084 0.916 50 H 0.118 0.882 51 H 0.055 0.945 52 H 0.060 0.940 53 H 0.099 0.901 54 H 0.088 0.912 55 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.601 -16.530 16.203 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.343 5.343 3 C -0.393 4.393 4 H 0.094 0.906 5 C -0.250 4.250 6 N -0.590 5.590 7 Si 0.800 3.200 8 H -0.202 1.202 9 H -0.222 1.222 10 H -0.198 1.198 11 C 0.026 3.974 12 C -0.160 4.160 13 C 0.000 4.000 14 N -0.333 5.333 15 C -0.072 4.072 16 C 0.327 3.673 17 O -0.473 6.473 18 C -0.109 4.109 19 C 0.058 3.942 20 H 0.122 0.878 21 C -0.187 4.187 22 C -0.151 4.151 23 C -0.198 4.198 24 C -0.013 4.013 25 O -0.306 6.306 26 C -0.151 4.151 27 C -0.174 4.174 28 C -0.165 4.165 29 H 0.010 0.990 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.058 0.942 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.128 0.872 42 H 0.040 0.960 43 H 0.103 0.897 44 H 0.114 0.886 45 H 0.076 0.924 46 H 0.105 0.895 47 H 0.043 0.957 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.136 0.864 51 H 0.074 0.926 52 H 0.079 0.921 53 H 0.118 0.882 54 H 0.107 0.893 55 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.149 -16.584 15.760 25.028 hybrid contribution -0.860 1.570 -0.383 1.830 sum 9.289 -15.014 15.378 23.413 Atomic orbital electron populations 1.20462 0.83260 0.95753 0.96814 1.44220 1.01957 1.02023 1.86086 1.19574 0.98196 0.86390 1.35156 0.90649 1.25860 0.98414 1.02099 0.98664 1.70279 1.19318 1.27403 1.42038 0.85258 0.77679 0.79044 0.77974 1.20222 1.22156 1.19786 1.20928 0.96089 0.86627 0.93786 1.22185 0.97823 0.96314 0.99663 1.21402 1.00916 0.94934 0.82736 1.47812 1.22121 1.49446 1.13914 1.22440 0.84797 0.99816 1.00139 1.20427 0.81339 0.76885 0.88651 1.90635 1.31271 1.56430 1.68925 1.22101 1.02220 0.96148 0.90408 1.22072 0.90582 0.83686 0.97847 0.87753 1.22148 0.97581 1.00013 0.98931 1.21551 0.99656 0.93734 1.00162 1.22183 0.97724 0.99161 1.00739 1.22629 0.93871 0.89526 0.95227 1.87959 1.66615 1.18921 1.57111 1.22946 0.98099 0.90979 1.03047 1.22831 0.95414 0.97791 1.01360 1.23489 0.93498 0.94761 1.04704 0.99028 0.95730 0.96088 0.94458 0.92084 0.93358 0.97046 0.94176 0.88137 0.91523 0.90495 0.92436 0.87205 0.95954 0.89655 0.88649 0.92399 0.89541 0.95676 0.89338 0.89842 0.86353 0.92647 0.92121 0.88204 0.89328 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.13 9.01 127.77 1.15 11.28 16 2 N -0.62 -33.88 2.93 -726.92 -2.13 -36.01 16 3 C -0.26 -15.14 9.67 84.03 0.81 -14.33 16 4 H 0.08 4.12 7.84 -2.91 -0.02 4.10 16 5 C -0.06 -3.27 5.13 84.86 0.43 -2.83 16 6 N -0.94 -58.80 10.58 21.65 0.23 -58.57 16 7 Si 0.97 46.30 29.57 68.60 2.03 48.33 16 8 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 9 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 C 0.15 6.75 5.71 86.38 0.49 7.25 16 12 C -0.12 -5.07 5.86 30.60 0.18 -4.89 16 13 C 0.12 4.13 5.46 86.38 0.47 4.60 16 14 N -0.60 -18.29 2.84 -846.75 -2.41 -20.70 16 15 C 0.07 1.56 8.05 127.77 1.03 2.59 16 16 C 0.54 17.36 5.32 87.66 0.47 17.83 16 17 O -0.59 -24.46 15.62 -3.02 -0.05 -24.50 16 18 C -0.11 -2.34 0.27 -52.40 -0.01 -2.35 16 19 C 0.12 2.47 2.09 30.62 0.06 2.53 16 20 H 0.10 1.47 8.08 -2.39 -0.02 1.45 16 21 C -0.15 -3.87 5.12 30.68 0.16 -3.72 16 22 C -0.11 -2.57 6.03 30.72 0.19 -2.39 16 23 C -0.16 -4.18 6.13 30.68 0.19 -3.99 16 24 C 0.06 1.39 6.84 72.01 0.49 1.89 16 25 O -0.39 -9.63 6.95 -148.98 -1.04 -10.67 16 26 C -0.11 -2.09 6.55 31.18 0.20 -1.89 16 27 C -0.14 -2.07 7.81 31.18 0.24 -1.83 16 28 C -0.13 -1.85 5.87 31.12 0.18 -1.67 16 29 H -0.01 -0.53 7.47 -2.39 -0.02 -0.55 16 30 H 0.02 1.42 7.11 -2.39 -0.02 1.40 16 31 H 0.02 1.02 7.85 -2.39 -0.02 1.00 16 32 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 33 H 0.06 2.47 8.03 -2.39 -0.02 2.45 16 34 H 0.05 2.01 7.87 -2.39 -0.02 1.99 16 35 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.10 2.74 8.07 -2.38 -0.02 2.72 16 38 H 0.07 2.37 7.37 -2.39 -0.02 2.35 16 39 H 0.08 1.27 7.09 -2.39 -0.02 1.26 16 40 H 0.06 1.40 8.11 -2.38 -0.02 1.38 16 41 H 0.11 2.28 3.23 -2.39 -0.01 2.27 16 42 H 0.02 0.81 7.36 -2.38 -0.02 0.79 16 43 H 0.08 1.92 7.73 -2.39 -0.02 1.91 16 44 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 47 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.12 1.45 8.10 -2.39 -0.02 1.43 16 51 H 0.05 1.36 7.48 -2.39 -0.02 1.34 16 52 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 54 H 0.09 1.30 4.58 -2.39 -0.01 1.29 16 55 H 0.12 1.08 8.06 -2.39 -0.02 1.06 16 Total: -1.00 -78.18 411.89 4.22 -73.96 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.84 Total: 20.09 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 6.74 Total: 8.08 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -4.30 Total: -115.28 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -1.08 Total: -35.17 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -78.18 4.22 -73.96 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717208594.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.337 kcal (2) G-P(sol) polarization free energy of solvation -78.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds