Wall clock time and date at job start Tue Mar 31 2020 22:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36943 * 119.99843 * 2 1 4 4 H 1.08000 * 119.99716 * 200.48996 * 3 2 1 5 5 C 1.38811 * 120.00001 * 20.50034 * 3 2 1 6 6 N 1.31622 * 120.00086 * 14.39354 * 5 3 2 7 7 Si 1.86802 * 120.00057 * 194.39900 * 5 3 2 8 8 H 1.48499 * 109.47428 * 89.99206 * 7 5 3 9 9 H 1.48497 * 109.47171 * 209.99673 * 7 5 3 10 10 H 1.48501 * 109.46862 * 329.99418 * 7 5 3 11 11 C 1.46497 * 120.00188 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.46980 * 90.00494 * 11 2 1 13 13 C 1.52997 * 109.47273 * 180.02562 * 12 11 2 14 14 N 1.46506 * 109.46944 * 179.97438 * 13 12 11 15 15 C 1.46490 * 119.99993 * 269.99847 * 14 13 12 16 16 C 1.34778 * 119.99418 * 89.99961 * 14 13 12 17 17 O 1.21279 * 120.00727 * 5.55743 * 16 14 13 18 18 C 1.50701 * 119.99295 * 185.55582 * 16 14 13 19 19 C 1.53000 * 112.85057 * 72.78755 * 18 16 14 20 20 H 1.09001 * 109.48230 * 294.14817 * 19 18 16 21 21 C 1.53091 * 109.47938 * 54.17299 * 19 18 16 22 22 C 1.53180 * 109.15876 * 177.58994 * 21 19 18 23 23 C 1.53175 * 109.04065 * 303.01675 * 22 21 19 24 24 C 1.53094 * 109.16034 * 56.98233 * 23 22 21 25 25 O 1.42902 * 109.42521 * 302.38880 * 24 23 22 26 26 C 1.53782 * 113.69019 * 204.05515 * 18 16 14 27 27 C 1.53776 * 87.08324 * 89.12451 * 26 18 16 28 28 C 1.53781 * 113.61598 * 301.58990 * 18 16 14 29 29 H 1.09001 * 109.46939 * 275.21595 * 1 2 3 30 30 H 1.09001 * 109.46887 * 35.21924 * 1 2 3 31 31 H 1.09001 * 109.46888 * 155.21830 * 1 2 3 32 32 H 0.96996 * 119.99718 * 180.02562 * 6 5 3 33 33 H 1.08997 * 109.47076 * 330.01084 * 11 2 1 34 34 H 1.09002 * 109.47247 * 210.00188 * 11 2 1 35 35 H 1.08999 * 109.46855 * 59.99613 * 12 11 2 36 36 H 1.09004 * 109.46868 * 300.00467 * 12 11 2 37 37 H 1.08992 * 109.47324 * 59.99967 * 13 12 11 38 38 H 1.09002 * 109.46921 * 299.99675 * 13 12 11 39 39 H 1.09004 * 109.47269 * 271.71335 * 15 14 13 40 40 H 1.08997 * 109.47348 * 31.71442 * 15 14 13 41 41 H 1.09001 * 109.47203 * 151.71285 * 15 14 13 42 42 H 1.09000 * 109.52340 * 57.68917 * 21 19 18 43 43 H 1.08999 * 109.52498 * 297.49528 * 21 19 18 44 44 H 1.09011 * 109.54050 * 183.15021 * 22 21 19 45 45 H 1.09001 * 109.61858 * 62.93480 * 22 21 19 46 46 H 1.09000 * 109.52139 * 297.07939 * 23 22 21 47 47 H 1.08998 * 109.52256 * 176.88307 * 23 22 21 48 48 H 1.09001 * 109.47940 * 62.37159 * 24 23 22 49 49 H 1.09002 * 109.48137 * 182.39708 * 24 23 22 50 50 H 1.08998 * 113.61550 * 203.67962 * 26 18 16 51 51 H 1.09000 * 113.61411 * 334.57923 * 26 18 16 52 52 H 1.08999 * 113.62177 * 270.88635 * 27 26 18 53 53 H 1.09006 * 113.61433 * 139.98142 * 27 26 18 54 54 H 1.08999 * 113.61501 * 25.34839 * 28 18 16 55 55 H 1.08999 * 113.61645 * 156.17531 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1785 1.2155 -0.3274 5 6 1.5216 2.3500 0.4210 6 7 0.3838 2.2828 1.0793 7 14 2.2909 4.0120 0.0531 8 1 1.7917 4.5103 -1.2537 9 1 1.9245 4.9748 1.1227 10 1 3.7683 3.8722 -0.0021 11 6 2.1976 -1.2687 0.0006 12 6 2.4527 -1.7109 -1.4418 13 6 3.2172 -3.0362 -1.4413 14 7 3.4609 -3.4599 -2.8224 15 6 2.4838 -4.3056 -3.5123 16 6 4.5841 -3.0715 -3.4581 17 8 5.4395 -2.4568 -2.8570 18 6 4.7769 -3.4011 -4.9159 19 6 3.8885 -2.5628 -5.8372 20 1 2.8428 -2.8168 -5.6636 21 6 4.1082 -1.0763 -5.5443 22 6 3.2610 -0.2429 -6.5108 23 6 3.6343 -0.6133 -7.9495 24 6 3.4329 -2.1177 -8.1494 25 8 4.2250 -2.8336 -7.1996 26 6 6.2515 -3.4403 -5.3507 27 6 6.2454 -4.9277 -4.9605 28 6 4.7294 -4.9081 -5.2183 29 1 -0.3633 0.0934 1.0234 30 1 -0.3633 0.8396 -0.5927 31 1 -0.3633 -0.9330 -0.4308 32 1 -0.0553 3.0962 1.3732 33 1 1.6084 -2.0281 0.5146 34 1 3.1500 -1.1381 0.5144 35 1 3.0417 -0.9514 -1.9559 36 1 1.5003 -1.8414 -1.9556 37 1 2.6278 -3.7954 -0.9274 38 1 4.1696 -2.9060 -0.9274 39 1 2.7077 -5.3541 -3.3157 40 1 1.4824 -4.0738 -3.1498 41 1 2.5343 -4.1183 -4.5849 42 1 5.1616 -0.8304 -5.6785 43 1 3.8103 -0.8592 -4.5186 44 1 3.4551 0.8169 -6.3450 45 1 2.2041 -0.4504 -6.3433 46 1 4.6781 -0.3581 -8.1321 47 1 2.9973 -0.0652 -8.6437 48 1 2.3812 -2.3658 -8.0061 49 1 3.7374 -2.3943 -9.1588 50 1 6.3969 -3.2692 -6.4173 51 1 6.9062 -2.8288 -4.7298 52 1 6.5087 -5.1069 -3.9181 53 1 6.7978 -5.5631 -5.6528 54 1 4.1553 -5.4816 -4.4906 55 1 4.4574 -5.1384 -6.2484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717208595.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:51 Heat of formation + Delta-G solvation = -59.411109 kcal Electronic energy + Delta-G solvation = -32009.051676 eV Core-core repulsion = 28046.657732 eV Total energy + Delta-G solvation = -3962.393945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.31618 -40.04864 -38.46809 -37.79544 -36.77335 -34.62992 -34.11786 -32.51943 -31.94898 -28.51607 -28.03912 -27.92799 -26.62983 -26.48026 -25.11470 -24.36002 -23.30740 -22.08071 -21.49362 -21.21887 -19.52291 -18.76231 -17.93430 -17.54111 -17.23275 -16.95804 -16.69176 -16.22000 -15.98057 -15.90377 -15.63309 -15.58089 -15.24252 -14.90919 -14.61345 -14.56736 -14.28685 -14.03115 -13.91833 -13.62960 -13.46359 -13.32307 -13.10852 -13.01459 -12.85011 -12.75322 -12.56119 -12.53442 -12.40088 -12.26260 -12.23708 -12.10707 -11.98090 -11.90348 -11.85826 -11.48955 -11.44286 -11.24405 -10.97254 -10.74732 -10.65318 -10.37403 -9.70313 -8.80854 -7.86821 -5.32932 1.40365 1.40925 1.46071 1.50711 1.96481 2.46896 2.72023 3.25010 3.31161 3.46198 3.63674 3.67073 3.73947 3.81313 3.89454 3.92804 4.03412 4.06863 4.09035 4.18156 4.32456 4.35105 4.46051 4.50919 4.54045 4.58946 4.63177 4.67152 4.73000 4.76150 4.79369 4.84277 4.85590 4.90908 4.91313 4.92741 4.99009 5.03882 5.06728 5.11683 5.13088 5.22262 5.24378 5.24990 5.31475 5.46588 5.48419 5.56952 5.58894 5.69575 6.21579 6.29053 6.36680 7.12295 7.13166 7.86132 8.26603 9.15987 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011780 B = 0.003353 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.432647 B = 8349.718522 C = 9508.991562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.622 5.622 3 C -0.262 4.262 4 H 0.058 0.942 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.962 3.038 8 H -0.285 1.285 9 H -0.288 1.288 10 H -0.276 1.276 11 C 0.153 3.847 12 C -0.127 4.127 13 C 0.123 3.877 14 N -0.610 5.610 15 C 0.063 3.937 16 C 0.537 3.463 17 O -0.579 6.579 18 C -0.105 4.105 19 C 0.125 3.875 20 H 0.075 0.925 21 C -0.149 4.149 22 C -0.124 4.124 23 C -0.151 4.151 24 C 0.058 3.942 25 O -0.375 6.375 26 C -0.114 4.114 27 C -0.138 4.138 28 C -0.110 4.110 29 H 0.005 0.995 30 H 0.013 0.987 31 H 0.035 0.965 32 H 0.249 0.751 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.021 0.979 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.039 0.961 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.062 0.938 49 H 0.118 0.882 50 H 0.105 0.895 51 H 0.047 0.953 52 H 0.063 0.937 53 H 0.091 0.909 54 H 0.088 0.912 55 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 -18.979 -20.832 28.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.346 5.346 3 C -0.392 4.392 4 H 0.076 0.924 5 C -0.245 4.245 6 N -0.583 5.583 7 Si 0.790 3.210 8 H -0.212 1.212 9 H -0.214 1.214 10 H -0.201 1.201 11 C 0.026 3.974 12 C -0.169 4.169 13 C 0.000 4.000 14 N -0.342 5.342 15 C -0.079 4.079 16 C 0.325 3.675 17 O -0.458 6.458 18 C -0.109 4.109 19 C 0.067 3.933 20 H 0.093 0.907 21 C -0.187 4.187 22 C -0.161 4.161 23 C -0.189 4.189 24 C -0.018 4.018 25 O -0.295 6.295 26 C -0.151 4.151 27 C -0.175 4.175 28 C -0.147 4.147 29 H 0.023 0.977 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.110 0.890 48 H 0.080 0.920 49 H 0.136 0.864 50 H 0.124 0.876 51 H 0.066 0.934 52 H 0.082 0.918 53 H 0.110 0.890 54 H 0.106 0.894 55 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.558 -18.683 -20.477 28.092 hybrid contribution 0.181 2.050 0.554 2.131 sum 4.739 -16.633 -19.923 26.383 Atomic orbital electron populations 1.20531 0.82370 0.96010 0.97665 1.44170 1.02366 1.01659 1.86369 1.19414 0.96727 0.86795 1.36288 0.92447 1.25639 0.98575 1.01324 0.98953 1.70229 1.19796 1.27175 1.41103 0.85348 0.78133 0.80272 0.77254 1.21153 1.21422 1.20076 1.20793 0.95330 0.87099 0.94152 1.22274 0.99286 0.96035 0.99265 1.21421 1.00384 0.96090 0.82137 1.47927 1.20765 1.51024 1.14456 1.22376 0.92381 0.94812 0.98287 1.20246 0.81027 0.77630 0.88548 1.90683 1.44153 1.42334 1.68676 1.21926 0.99443 0.99657 0.89847 1.21569 0.97136 0.91933 0.82641 0.90738 1.22116 1.00782 0.96854 0.98941 1.21596 0.99586 0.99527 0.95412 1.22180 1.02712 0.98038 0.95953 1.22797 0.95635 0.90188 0.93166 1.87849 1.61110 1.66700 1.13794 1.22782 0.92665 0.97638 1.02051 1.22794 0.97384 0.96104 1.01267 1.23158 0.96811 0.90475 1.04302 0.97668 0.96811 0.94622 0.94147 0.91908 0.94875 0.96010 0.92084 0.87248 0.92019 0.89700 0.89798 0.89712 0.92362 0.94188 0.92347 0.91434 0.91620 0.89041 0.91961 0.86416 0.87645 0.93397 0.91819 0.89017 0.89397 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.02 8.97 127.77 1.15 10.17 16 2 N -0.62 -32.66 2.93 -726.91 -2.13 -34.79 16 3 C -0.26 -15.36 9.67 84.03 0.81 -14.55 16 4 H 0.06 3.42 7.87 -2.91 -0.02 3.39 16 5 C -0.05 -2.93 5.08 84.86 0.43 -2.50 16 6 N -0.94 -57.01 10.64 21.65 0.23 -56.78 16 7 Si 0.96 47.49 29.58 68.60 2.03 49.52 16 8 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 9 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 11 C 0.15 6.38 5.64 86.38 0.49 6.86 16 12 C -0.13 -4.57 5.86 30.60 0.18 -4.40 16 13 C 0.12 3.46 5.46 86.38 0.47 3.93 16 14 N -0.61 -15.15 2.87 -846.78 -2.43 -17.58 16 15 C 0.06 0.94 8.90 127.77 1.14 2.08 16 16 C 0.54 15.80 5.14 87.66 0.45 16.25 16 17 O -0.58 -22.89 15.61 -3.03 -0.05 -22.94 16 18 C -0.11 -2.34 0.25 -52.40 -0.01 -2.35 16 19 C 0.13 2.62 2.12 30.62 0.06 2.69 16 20 H 0.08 1.41 6.15 -2.39 -0.01 1.39 16 21 C -0.15 -3.96 5.03 30.68 0.15 -3.80 16 22 C -0.12 -2.71 6.03 30.71 0.19 -2.52 16 23 C -0.15 -2.38 6.14 30.68 0.19 -2.19 16 24 C 0.06 0.77 6.84 72.01 0.49 1.27 16 25 O -0.38 -6.71 8.48 -148.98 -1.26 -7.98 16 26 C -0.11 -2.59 6.79 31.12 0.21 -2.38 16 27 C -0.14 -2.49 7.81 31.12 0.24 -2.24 16 28 C -0.11 -1.69 5.94 31.12 0.18 -1.50 16 29 H 0.01 0.28 7.39 -2.39 -0.02 0.26 16 30 H 0.01 0.73 7.21 -2.39 -0.02 0.71 16 31 H 0.04 1.47 8.03 -2.39 -0.02 1.45 16 32 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.06 2.27 8.07 -2.39 -0.02 2.26 16 34 H 0.03 1.46 8.04 -2.39 -0.02 1.44 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.11 2.32 8.07 -2.39 -0.02 2.30 16 38 H 0.06 2.03 7.35 -2.39 -0.02 2.01 16 39 H 0.08 0.88 7.14 -2.38 -0.02 0.86 16 40 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 41 H 0.08 1.13 3.96 -2.39 -0.01 1.12 16 42 H 0.06 1.69 7.99 -2.39 -0.02 1.68 16 43 H 0.04 1.33 7.36 -2.39 -0.02 1.32 16 44 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.11 2.19 7.14 -2.39 -0.02 2.18 16 51 H 0.05 1.38 7.39 -2.39 -0.02 1.36 16 52 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 53 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 54 H 0.09 1.12 5.48 -2.39 -0.01 1.11 16 55 H 0.12 1.43 7.57 -2.39 -0.02 1.41 16 Total: -1.00 -75.33 413.12 4.06 -71.27 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.84 Total: 14.47 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 6.83 Total: 4.80 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -4.33 Total: -109.16 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -1.31 Total: -30.92 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -75.33 4.06 -71.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717208595.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.861 kcal (2) G-P(sol) polarization free energy of solvation -75.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds