Wall clock time and date at job start Tue Mar 31 2020 21:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47333 * 2 1 4 4 C 1.42897 * 114.00403 * 183.79704 * 3 2 1 5 5 H 1.09002 * 109.46949 * 347.01855 * 4 3 2 6 6 C 1.50695 * 109.47453 * 227.02389 * 4 3 2 7 7 O 1.21283 * 119.99976 * 353.72231 * 6 4 3 8 8 N 1.34777 * 120.00311 * 173.73060 * 6 4 3 9 9 C 1.46946 * 120.71692 * 355.33875 * 8 6 4 10 10 C 1.53177 * 108.94597 * 125.73951 * 9 8 6 11 11 C 1.53197 * 109.27682 * 55.30213 * 10 9 8 12 12 C 1.52062 * 109.67413 * 300.04157 * 11 10 9 13 13 C 1.54571 * 110.68460 * 182.45937 * 12 11 10 14 14 C 1.54462 * 102.75533 * 152.63362 * 13 12 11 15 15 N 1.47081 * 107.43019 * 338.70651 * 14 13 12 16 16 C 1.36935 * 125.63039 * 178.94260 * 15 14 13 17 17 H 1.07998 * 120.00074 * 174.78773 * 16 15 14 18 18 C 1.38819 * 119.99676 * 354.79162 * 16 15 14 19 19 N 1.31614 * 120.00437 * 7.44194 * 18 16 15 20 20 Si 1.86800 * 119.99590 * 187.44624 * 18 16 15 21 21 H 1.48498 * 109.47151 * 94.98091 * 20 18 16 22 22 H 1.48500 * 109.46700 * 214.97725 * 20 18 16 23 23 H 1.48497 * 109.47389 * 334.97499 * 20 18 16 24 24 C 1.47572 * 108.74213 * 358.91842 * 15 14 13 25 25 C 1.47112 * 120.71790 * 175.31814 * 8 6 4 26 26 C 1.53001 * 109.47427 * 107.02079 * 4 3 2 27 27 C 1.53005 * 109.46882 * 294.46122 * 26 4 3 28 28 C 1.52999 * 109.46986 * 54.45991 * 26 4 3 29 29 H 1.09003 * 109.47085 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46913 * 300.00116 * 1 2 3 31 31 H 1.08999 * 109.46652 * 60.00284 * 1 2 3 32 32 H 1.09001 * 109.47425 * 239.99766 * 2 1 3 33 33 H 1.09005 * 109.47027 * 119.99581 * 2 1 3 34 34 H 1.09003 * 109.55691 * 245.57981 * 9 8 6 35 35 H 1.09002 * 109.56132 * 5.79142 * 9 8 6 36 36 H 1.09000 * 109.50338 * 175.24509 * 10 9 8 37 37 H 1.08998 * 109.50087 * 295.32339 * 10 9 8 38 38 H 1.09000 * 109.43351 * 179.97438 * 11 10 9 39 39 H 1.08996 * 109.43736 * 60.10833 * 11 10 9 40 40 H 1.09007 * 110.70603 * 34.35801 * 13 12 11 41 41 H 1.08999 * 110.86113 * 270.98104 * 13 12 11 42 42 H 1.09004 * 109.87706 * 219.20272 * 14 13 12 43 43 H 1.09006 * 109.87812 * 98.20746 * 14 13 12 44 44 H 0.96999 * 120.00465 * 180.02562 * 19 18 16 45 45 H 1.08996 * 110.37759 * 142.12667 * 24 15 14 46 46 H 1.09005 * 110.37936 * 264.47679 * 24 15 14 47 47 H 1.09000 * 109.57217 * 112.47051 * 25 8 6 48 48 H 1.08994 * 109.57891 * 352.08319 * 25 8 6 49 49 H 1.08996 * 109.47373 * 174.46164 * 26 4 3 50 50 H 1.09000 * 109.47281 * 63.35790 * 27 26 4 51 51 H 1.08996 * 109.46798 * 183.36051 * 27 26 4 52 52 H 1.08997 * 109.47092 * 303.35467 * 27 26 4 53 53 H 1.09000 * 109.46987 * 60.00143 * 28 26 4 54 54 H 1.09000 * 109.46656 * 180.02562 * 28 26 4 55 55 H 1.09004 * 109.47329 * 300.00029 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4282 1.4611 -0.0864 5 1 3.8823 0.4869 0.0949 6 6 3.9173 2.4433 0.9464 7 8 3.1206 3.0765 1.6063 8 7 5.2400 2.6184 1.1369 9 6 6.2179 1.7883 0.4200 10 6 7.2028 2.7028 -0.3148 11 6 7.8373 3.6721 0.6877 12 6 6.7533 4.5146 1.3415 13 6 7.3737 5.5441 2.3133 14 6 6.3343 6.6866 2.3089 15 7 5.5445 6.5590 1.0747 16 6 4.5055 7.3707 0.7050 17 1 4.0414 7.2471 -0.2624 18 6 4.0488 8.3526 1.5736 19 7 4.7036 8.6021 2.6877 20 14 2.5048 9.3197 1.1611 21 1 1.3342 8.6890 1.8223 22 1 2.6523 10.7166 1.6429 23 1 2.3005 9.3224 -0.3098 24 6 6.0570 5.4121 0.3002 25 6 5.7359 3.6449 2.0667 26 6 3.8166 1.9529 -1.4822 27 6 3.4434 0.8915 -2.5191 28 6 3.0701 3.2523 -1.7910 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 6.7596 1.1657 1.1321 35 1 5.7003 1.1538 -0.2995 36 1 7.9819 2.0992 -0.7804 37 1 6.6725 3.2671 -1.0818 38 1 8.5391 4.3239 0.1674 39 1 8.3681 3.1062 1.4532 40 1 8.3355 5.8958 1.9397 41 1 7.4780 5.1210 3.3123 42 1 6.8430 7.6505 2.3254 43 1 5.6816 6.5973 3.1774 44 1 4.3843 9.2879 3.2948 45 1 5.2346 4.8763 -0.1736 46 1 6.7730 5.7497 -0.4492 47 1 6.2103 3.1642 2.9222 48 1 4.9044 4.2620 2.4068 49 1 4.8908 2.1338 -1.5178 50 1 2.3621 0.7537 -2.5251 51 1 3.7738 1.2157 -3.5059 52 1 3.9284 -0.0509 -2.2651 53 1 3.3360 4.0084 -1.0523 54 1 3.3465 3.6024 -2.7856 55 1 1.9958 3.0715 -1.7554 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717245985.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:08 Heat of formation + Delta-G solvation = -83.756901 kcal Electronic energy + Delta-G solvation = -33173.962976 eV Core-core repulsion = 29210.513319 eV Total energy + Delta-G solvation = -3963.449657 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89132 -40.24871 -38.70615 -37.34184 -35.88155 -34.70499 -33.21625 -32.07218 -31.81397 -30.22955 -28.68388 -28.10837 -27.36584 -26.00194 -25.41768 -23.67880 -23.11661 -22.00722 -21.67619 -20.71887 -19.25458 -18.92346 -18.11641 -17.84933 -17.09914 -16.84996 -16.66745 -16.25115 -16.03166 -15.81836 -15.44667 -15.02784 -14.98140 -14.77045 -14.45936 -14.10090 -14.03266 -13.94748 -13.68240 -13.53830 -13.28962 -13.24702 -13.20958 -13.02894 -12.96418 -12.93916 -12.81481 -12.49740 -12.29067 -12.11967 -12.09200 -12.06323 -11.94449 -11.85440 -11.80642 -11.63162 -11.54761 -11.24862 -11.04784 -10.85266 -10.70945 -10.22325 -9.56179 -8.88344 -7.90000 -5.21126 1.33886 1.39816 1.45729 1.58863 1.88070 2.44192 2.83675 3.28453 3.45437 3.60951 3.66990 3.77197 3.79320 3.90418 3.96990 4.11542 4.14788 4.17615 4.18546 4.25640 4.33446 4.38627 4.48323 4.51883 4.57618 4.66639 4.70547 4.76587 4.78454 4.80056 4.83400 4.90957 4.93421 4.97942 4.98217 5.01452 5.04506 5.11696 5.13828 5.18883 5.25172 5.26180 5.36601 5.38928 5.42493 5.49568 5.56655 5.57028 5.67381 5.77426 6.17474 6.18484 6.52024 7.08945 7.26533 7.77348 8.41034 9.20863 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010327 B = 0.004687 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.568153 B = 5972.700184 C = 7534.681591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.385 6.385 4 C 0.087 3.913 5 H 0.122 0.878 6 C 0.496 3.504 7 O -0.582 6.582 8 N -0.603 5.603 9 C 0.093 3.907 10 C -0.133 4.133 11 C -0.095 4.095 12 C -0.072 4.072 13 C -0.119 4.119 14 C 0.184 3.816 15 N -0.624 5.624 16 C -0.235 4.235 17 H 0.068 0.932 18 C -0.062 4.062 19 N -0.946 5.946 20 Si 0.965 3.035 21 H -0.297 1.297 22 H -0.285 1.285 23 H -0.268 1.268 24 C 0.154 3.846 25 C 0.139 3.861 26 C -0.103 4.103 27 C -0.140 4.140 28 C -0.138 4.138 29 H 0.099 0.901 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.003 0.997 43 H 0.001 0.999 44 H 0.246 0.754 45 H 0.022 0.978 46 H 0.021 0.979 47 H 0.082 0.918 48 H 0.038 0.962 49 H 0.103 0.897 50 H 0.054 0.946 51 H 0.072 0.928 52 H 0.083 0.917 53 H 0.010 0.990 54 H 0.068 0.932 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.261 -25.854 -9.995 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.304 6.304 4 C 0.026 3.974 5 H 0.139 0.861 6 C 0.284 3.716 7 O -0.461 6.461 8 N -0.337 5.337 9 C -0.028 4.028 10 C -0.171 4.171 11 C -0.133 4.133 12 C -0.073 4.073 13 C -0.158 4.158 14 C 0.059 3.941 15 N -0.350 5.350 16 C -0.364 4.364 17 H 0.086 0.914 18 C -0.255 4.255 19 N -0.595 5.595 20 Si 0.794 3.206 21 H -0.225 1.225 22 H -0.211 1.211 23 H -0.192 1.192 24 C 0.029 3.971 25 C 0.016 3.984 26 C -0.122 4.122 27 C -0.197 4.197 28 C -0.196 4.196 29 H 0.117 0.883 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.021 0.979 43 H 0.019 0.981 44 H 0.055 0.945 45 H 0.040 0.960 46 H 0.038 0.962 47 H 0.100 0.900 48 H 0.057 0.943 49 H 0.120 0.880 50 H 0.073 0.927 51 H 0.091 0.909 52 H 0.102 0.898 53 H 0.029 0.971 54 H 0.087 0.913 55 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.583 -25.209 -9.583 27.541 hybrid contribution -1.328 1.658 0.534 2.191 sum 4.255 -23.551 -9.048 25.586 Atomic orbital electron populations 1.21760 0.93475 1.03421 1.02097 1.22926 0.96224 0.82517 1.01468 1.88072 1.19347 1.28429 1.94510 1.22080 0.83538 0.98378 0.93386 0.86052 1.21519 0.82301 0.83937 0.83834 1.90736 1.55857 1.49679 1.49824 1.48202 1.05238 1.36231 1.44053 1.22295 0.90562 0.93024 0.96919 1.22003 0.99312 0.98015 0.97723 1.21333 0.95516 0.97447 0.98980 1.21386 0.95751 0.94497 0.95710 1.22759 0.98116 0.95174 0.99724 1.20925 0.90657 0.94571 0.87921 1.44767 1.36549 1.32214 1.21476 1.19271 1.07370 1.10077 0.99717 0.91429 1.25524 1.01862 1.01027 0.97101 1.70176 1.40536 1.35473 1.13337 0.85251 0.79789 0.77669 0.77917 1.22472 1.21072 1.19246 1.21557 0.94923 0.87241 0.93390 1.21154 0.96464 0.89139 0.91633 1.21676 1.01433 0.96345 0.92741 1.21843 1.02062 0.97777 0.97996 1.21659 1.00736 0.96678 1.00517 0.88286 0.93937 0.92293 0.90130 0.92961 0.88339 0.87425 0.86477 0.92835 0.90878 0.89097 0.89839 0.89940 0.97892 0.98094 0.94508 0.95993 0.96166 0.89983 0.94323 0.87951 0.92711 0.90925 0.89780 0.97073 0.91330 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 10.28 71.98 0.74 -1.98 16 2 C 0.04 0.84 6.04 71.98 0.43 1.27 16 3 O -0.38 -11.19 8.31 -130.02 -1.08 -12.27 16 4 C 0.09 2.16 1.49 29.85 0.04 2.20 16 5 H 0.12 1.92 6.90 -2.39 -0.02 1.90 16 6 C 0.50 17.58 6.08 87.66 0.53 18.11 16 7 O -0.58 -29.08 15.96 15.92 0.25 -28.83 16 8 N -0.60 -17.59 2.59 -820.26 -2.12 -19.71 16 9 C 0.09 1.48 5.44 86.35 0.47 1.95 16 10 C -0.13 -2.09 5.71 30.72 0.18 -1.91 16 11 C -0.10 -1.97 4.65 30.35 0.14 -1.83 16 12 C -0.07 -2.37 0.55 -51.84 -0.03 -2.40 16 13 C -0.12 -4.35 5.91 31.63 0.19 -4.16 16 14 C 0.18 9.74 5.11 86.77 0.44 10.18 16 15 N -0.62 -34.95 3.34 -692.77 -2.31 -37.26 16 16 C -0.23 -14.68 10.26 84.04 0.86 -13.82 16 17 H 0.07 4.18 7.84 -2.91 -0.02 4.15 16 18 C -0.06 -3.90 5.48 84.86 0.46 -3.44 16 19 N -0.95 -61.58 10.36 21.65 0.22 -61.36 16 20 Si 0.97 51.03 29.56 68.60 2.03 53.06 16 21 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 22 H -0.28 -14.58 7.11 99.48 0.71 -13.88 16 23 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 24 C 0.15 6.68 5.18 86.55 0.45 7.13 16 25 C 0.14 4.94 4.98 86.01 0.43 5.37 16 26 C -0.10 -2.17 2.30 -10.79 -0.02 -2.19 16 27 C -0.14 -1.84 8.30 71.98 0.60 -1.25 16 28 C -0.14 -4.20 8.81 71.98 0.63 -3.56 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.01 6.71 -2.39 -0.02 0.99 16 33 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.11 1.17 4.55 -2.39 -0.01 1.16 16 36 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.05 1.07 6.70 -2.39 -0.02 1.06 16 38 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 2.69 8.01 -2.38 -0.02 2.67 16 41 H 0.08 2.66 8.00 -2.39 -0.02 2.64 16 42 H 0.00 0.17 7.60 -2.38 -0.02 0.15 16 43 H 0.00 0.05 7.30 -2.38 -0.02 0.03 16 44 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.02 1.01 7.11 -2.39 -0.02 1.00 16 46 H 0.02 0.86 7.98 -2.38 -0.02 0.84 16 47 H 0.08 2.47 8.12 -2.39 -0.02 2.45 16 48 H 0.04 1.91 6.81 -2.39 -0.02 1.89 16 49 H 0.10 1.85 4.90 -2.39 -0.01 1.84 16 50 H 0.05 0.82 7.01 -2.39 -0.02 0.81 16 51 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 53 H 0.01 0.42 6.89 -2.39 -0.02 0.40 16 54 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 55 H 0.05 1.63 7.55 -2.38 -0.02 1.61 16 Total: -1.00 -90.55 405.82 4.39 -86.16 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.85 Total: 10.54 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 6.55 Total: 9.67 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -4.21 Total: -118.34 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.83 Total: -41.10 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.03 Total: 53.06 kcal Total: -90.55 4.39 -86.16 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717245985.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.406 kcal (2) G-P(sol) polarization free energy of solvation -90.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds