Wall clock time and date at job start Tue Mar 31 2020 21:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42890 * 109.47185 * 2 1 4 4 C 1.42902 * 114.00175 * 182.69679 * 3 2 1 5 5 H 1.09002 * 109.46833 * 7.38064 * 4 3 2 6 6 C 1.50706 * 109.47092 * 127.37434 * 4 3 2 7 7 O 1.21283 * 119.99691 * 15.93640 * 6 4 3 8 8 N 1.34776 * 119.99848 * 195.93683 * 6 4 3 9 9 C 1.46937 * 120.71911 * 355.49961 * 8 6 4 10 10 C 1.53191 * 108.90378 * 234.31091 * 9 8 6 11 11 C 1.53185 * 109.27166 * 304.61428 * 10 9 8 12 12 C 1.52062 * 109.73403 * 59.93105 * 11 10 9 13 13 C 1.54583 * 110.67991 * 64.30568 * 12 11 10 14 14 C 1.54475 * 102.76031 * 152.61536 * 13 12 11 15 15 N 1.47088 * 107.42629 * 338.70079 * 14 13 12 16 16 C 1.36936 * 125.63050 * 178.94925 * 15 14 13 17 17 H 1.07995 * 120.00189 * 179.97438 * 16 15 14 18 18 C 1.38817 * 119.99600 * 359.96707 * 16 15 14 19 19 N 1.31620 * 119.99912 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99749 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47124 * 90.00351 * 20 18 16 22 22 H 1.48497 * 109.47478 * 210.00489 * 20 18 16 23 23 H 1.48504 * 109.46933 * 330.00474 * 20 18 16 24 24 C 1.47576 * 108.74117 * 358.92158 * 15 14 13 25 25 C 1.47098 * 120.71366 * 175.48040 * 8 6 4 26 26 C 1.52997 * 109.47284 * 247.37636 * 4 3 2 27 27 C 1.53005 * 109.47120 * 304.88239 * 26 4 3 28 28 C 1.52993 * 109.47108 * 64.88313 * 26 4 3 29 29 H 1.09001 * 109.47391 * 60.00174 * 1 2 3 30 30 H 1.09010 * 109.47234 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47208 * 299.99557 * 1 2 3 32 32 H 1.08998 * 109.46727 * 239.99944 * 2 1 3 33 33 H 1.09004 * 109.47173 * 120.00556 * 2 1 3 34 34 H 1.08997 * 109.56836 * 114.48155 * 9 8 6 35 35 H 1.08998 * 109.66349 * 354.19147 * 9 8 6 36 36 H 1.08997 * 109.50374 * 184.67620 * 10 9 8 37 37 H 1.08999 * 109.53604 * 64.57371 * 10 9 8 38 38 H 1.08999 * 109.43327 * 299.84626 * 11 10 9 39 39 H 1.09002 * 109.38154 * 179.97438 * 11 10 9 40 40 H 1.08998 * 110.70434 * 34.34603 * 13 12 11 41 41 H 1.08995 * 110.86416 * 270.96225 * 13 12 11 42 42 H 1.08990 * 109.88102 * 219.19305 * 14 13 12 43 43 H 1.09005 * 109.87502 * 98.19404 * 14 13 12 44 44 H 0.97006 * 119.99517 * 179.97438 * 19 18 16 45 45 H 1.09000 * 110.37646 * 142.12055 * 24 15 14 46 46 H 1.09002 * 110.37732 * 264.47002 * 24 15 14 47 47 H 1.08996 * 109.57027 * 7.97124 * 25 8 6 48 48 H 1.09000 * 109.56810 * 247.61275 * 25 8 6 49 49 H 1.09005 * 109.47076 * 184.88390 * 26 4 3 50 50 H 1.08995 * 109.47063 * 57.96608 * 27 26 4 51 51 H 1.08999 * 109.47048 * 177.96577 * 27 26 4 52 52 H 1.09003 * 109.46899 * 297.96776 * 27 26 4 53 53 H 1.09000 * 109.47533 * 61.18578 * 28 26 4 54 54 H 1.08999 * 109.47549 * 181.18679 * 28 26 4 55 55 H 1.09000 * 109.47220 * 301.18637 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4295 1.4605 -0.0614 5 1 3.8655 0.4756 -0.2284 6 6 3.8119 2.3778 -1.1944 7 8 2.9793 3.1048 -1.6934 8 7 5.0792 2.3900 -1.6531 9 6 6.1225 1.5894 -0.9975 10 6 7.2912 2.5069 -0.6246 11 6 7.7780 3.2404 -1.8782 12 6 6.6452 4.0721 -2.4589 13 6 6.2258 5.1869 -1.4735 14 6 5.6672 6.2794 -2.4119 15 7 6.2291 6.0402 -3.7500 16 6 5.9628 6.7801 -4.8711 17 1 6.4281 6.5228 -5.8111 18 6 5.0946 7.8609 -4.7992 19 7 4.5278 8.1746 -3.6534 20 14 4.7307 8.8699 -6.3285 21 1 3.5586 8.2932 -7.0347 22 1 4.4330 10.2712 -5.9378 23 1 5.9114 8.8472 -7.2289 24 6 7.1279 4.8715 -3.6849 25 6 5.4477 3.2048 -2.8210 26 6 3.9529 2.0332 1.2573 27 6 3.2497 3.3597 1.5521 28 6 3.6717 1.0441 2.3901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 6.4704 0.8140 -1.6799 35 1 5.7187 1.1281 -0.0962 36 1 8.1052 1.9103 -0.2130 37 1 6.9615 3.2340 0.1175 38 1 8.1096 2.5124 -2.6186 39 1 8.6095 3.8942 -1.6148 40 1 7.0891 5.5575 -0.9208 41 1 5.4531 4.8318 -0.7917 42 1 5.9676 7.2642 -2.0544 43 1 4.5797 6.2148 -2.4498 44 1 3.9214 8.9301 -3.6031 45 1 7.0357 4.2709 -4.5898 46 1 8.1599 5.1936 -3.5456 47 1 4.6081 3.8405 -3.1022 48 1 5.7084 2.5519 -3.6540 49 1 5.0272 2.2008 1.1796 50 1 2.1726 3.1984 1.5939 51 1 3.5962 3.7497 2.5091 52 1 3.4795 4.0759 0.7631 53 1 4.1898 0.1061 2.1905 54 1 4.0256 1.4611 3.3329 55 1 2.5992 0.8602 2.4540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717245986.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:13 Heat of formation + Delta-G solvation = -85.134334 kcal Electronic energy + Delta-G solvation = -32705.991272 eV Core-core repulsion = 28742.481885 eV Total energy + Delta-G solvation = -3963.509387 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.87558 -40.27284 -38.68748 -37.33973 -35.89984 -34.69923 -33.22701 -32.04347 -31.65299 -30.44683 -28.81674 -28.08960 -27.22914 -25.99600 -25.39011 -23.69715 -23.02317 -22.12681 -21.66400 -20.69390 -19.53508 -18.59556 -18.19119 -17.84098 -17.09060 -16.84909 -16.63247 -16.31752 -15.95358 -15.77355 -15.43219 -15.06688 -15.02056 -14.70944 -14.57034 -14.08500 -14.03008 -13.90467 -13.70385 -13.53657 -13.35119 -13.24713 -13.23906 -13.01681 -12.97025 -12.92513 -12.78766 -12.43644 -12.23002 -12.11149 -12.09798 -12.00941 -11.90857 -11.85407 -11.80117 -11.62570 -11.53972 -11.29202 -11.07750 -10.92769 -10.73070 -10.22503 -9.58010 -8.90479 -7.85673 -5.21738 1.40072 1.44101 1.52258 1.60211 1.82658 2.47410 2.81602 3.32271 3.44645 3.60997 3.68237 3.71710 3.79690 3.89612 3.92470 4.12477 4.15946 4.18993 4.22827 4.26180 4.33442 4.39389 4.48415 4.52562 4.56068 4.62279 4.69898 4.75693 4.80069 4.82274 4.85951 4.89212 4.92979 4.94270 5.00970 5.01933 5.04515 5.08077 5.13961 5.16784 5.24340 5.26226 5.38423 5.42948 5.44949 5.49762 5.52470 5.56895 5.65378 5.75225 6.15509 6.17582 6.51178 7.07400 7.24834 7.77092 8.42154 9.24698 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013441 B = 0.003568 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.726462 B = 7845.853966 C = 8866.293861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.383 6.383 4 C 0.088 3.912 5 H 0.120 0.880 6 C 0.493 3.507 7 O -0.581 6.581 8 N -0.603 5.603 9 C 0.093 3.907 10 C -0.129 4.129 11 C -0.096 4.096 12 C -0.069 4.069 13 C -0.108 4.108 14 C 0.194 3.806 15 N -0.625 5.625 16 C -0.240 4.240 17 H 0.087 0.913 18 C -0.073 4.073 19 N -0.954 5.954 20 Si 0.980 3.020 21 H -0.290 1.290 22 H -0.295 1.295 23 H -0.261 1.261 24 C 0.141 3.859 25 C 0.140 3.860 26 C -0.100 4.100 27 C -0.140 4.140 28 C -0.139 4.139 29 H 0.041 0.959 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.051 0.949 42 H -0.002 1.002 43 H -0.011 1.011 44 H 0.243 0.757 45 H 0.044 0.956 46 H 0.036 0.964 47 H 0.039 0.961 48 H 0.076 0.924 49 H 0.101 0.899 50 H 0.049 0.951 51 H 0.072 0.928 52 H 0.014 0.986 53 H 0.081 0.919 54 H 0.071 0.929 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.015 -25.017 14.459 29.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.301 6.301 4 C 0.027 3.973 5 H 0.138 0.862 6 C 0.282 3.718 7 O -0.460 6.460 8 N -0.337 5.337 9 C -0.028 4.028 10 C -0.166 4.166 11 C -0.134 4.134 12 C -0.070 4.070 13 C -0.146 4.146 14 C 0.068 3.932 15 N -0.351 5.351 16 C -0.370 4.370 17 H 0.105 0.895 18 C -0.265 4.265 19 N -0.604 5.604 20 Si 0.808 3.192 21 H -0.217 1.217 22 H -0.221 1.221 23 H -0.186 1.186 24 C 0.016 3.984 25 C 0.017 3.983 26 C -0.118 4.118 27 C -0.198 4.198 28 C -0.197 4.197 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.016 0.984 43 H 0.007 0.993 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.094 0.906 49 H 0.119 0.881 50 H 0.069 0.931 51 H 0.091 0.909 52 H 0.033 0.967 53 H 0.100 0.900 54 H 0.090 0.910 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.328 -24.328 14.144 28.472 hybrid contribution -0.909 1.643 -1.287 2.276 sum 3.419 -22.685 12.857 26.298 Atomic orbital electron populations 1.21764 0.93515 1.03392 1.02128 1.22915 0.96202 0.82548 1.01422 1.88061 1.19370 1.28342 1.94346 1.22116 0.83640 0.98838 0.92745 0.86233 1.21671 0.81998 0.83761 0.84405 1.90748 1.51402 1.43192 1.60652 1.48260 1.08623 1.46089 1.30768 1.22275 0.87823 0.93676 0.99028 1.21960 0.98424 0.99058 0.97198 1.21322 0.95369 0.98637 0.98059 1.21376 0.95945 0.94389 0.95339 1.22585 0.99714 0.95572 0.96736 1.20762 0.94112 0.94040 0.84276 1.44809 1.51829 1.32683 1.05816 1.19511 1.21736 1.07040 0.88666 0.89547 1.25742 1.00031 1.00629 1.00147 1.70266 1.34553 1.30116 1.25443 0.85058 0.78228 0.77312 0.78646 1.21742 1.22131 1.18560 1.21714 0.93049 0.87435 0.96228 1.21082 0.96668 0.92969 0.87557 1.21581 1.00768 0.96203 0.93292 1.21677 1.00967 0.96499 1.00632 1.21817 1.02345 0.98568 0.96923 0.94021 0.88418 0.92111 0.93030 0.90170 0.88648 0.87253 0.86566 0.92350 0.89691 0.90798 0.90779 0.92984 0.98400 0.99264 0.94803 0.93781 0.94609 0.94248 0.90601 0.88075 0.93149 0.90922 0.96664 0.89969 0.90962 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 10.28 71.98 0.74 -1.83 16 2 C 0.04 0.79 6.10 71.98 0.44 1.23 16 3 O -0.38 -10.28 8.19 -130.44 -1.07 -11.35 16 4 C 0.09 2.00 1.48 29.85 0.04 2.04 16 5 H 0.12 1.72 6.74 -2.39 -0.02 1.70 16 6 C 0.49 16.56 6.02 87.66 0.53 17.09 16 7 O -0.58 -27.90 15.97 15.50 0.25 -27.65 16 8 N -0.60 -16.96 2.60 -820.28 -2.13 -19.09 16 9 C 0.09 1.41 5.57 86.36 0.48 1.89 16 10 C -0.13 -1.91 5.92 30.72 0.18 -1.73 16 11 C -0.10 -2.02 4.64 30.35 0.14 -1.88 16 12 C -0.07 -2.31 0.56 -51.83 -0.03 -2.33 16 13 C -0.11 -4.36 4.92 31.63 0.16 -4.20 16 14 C 0.19 10.76 4.95 86.77 0.43 11.19 16 15 N -0.63 -34.38 3.39 -692.72 -2.35 -36.72 16 16 C -0.24 -14.38 10.28 84.03 0.86 -13.52 16 17 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 18 C -0.07 -4.50 5.49 84.86 0.47 -4.04 16 19 N -0.95 -63.28 10.30 21.65 0.22 -63.06 16 20 Si 0.98 49.24 29.55 68.60 2.03 51.27 16 21 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 22 H -0.29 -14.85 7.11 99.48 0.71 -14.15 16 23 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 24 C 0.14 5.80 6.15 86.55 0.53 6.33 16 25 C 0.14 5.03 5.08 86.01 0.44 5.47 16 26 C -0.10 -1.85 2.34 -10.80 -0.03 -1.88 16 27 C -0.14 -3.73 8.81 71.98 0.63 -3.09 16 28 C -0.14 -1.60 8.76 71.98 0.63 -0.97 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 33 H 0.08 0.91 7.23 -2.38 -0.02 0.89 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.11 1.06 4.49 -2.39 -0.01 1.05 16 36 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 1.05 7.42 -2.39 -0.02 1.04 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 40 H 0.07 2.68 7.99 -2.39 -0.02 2.66 16 41 H 0.05 2.15 7.70 -2.39 -0.02 2.13 16 42 H 0.00 -0.14 7.50 -2.39 -0.02 -0.16 16 43 H -0.01 -0.73 7.38 -2.38 -0.02 -0.74 16 44 H 0.24 15.72 8.31 -92.70 -0.77 14.95 16 45 H 0.04 1.75 8.01 -2.39 -0.02 1.73 16 46 H 0.04 1.40 8.00 -2.39 -0.02 1.38 16 47 H 0.04 1.95 6.61 -2.39 -0.02 1.93 16 48 H 0.08 2.43 8.12 -2.39 -0.02 2.41 16 49 H 0.10 1.56 6.17 -2.38 -0.01 1.54 16 50 H 0.05 1.47 7.49 -2.39 -0.02 1.45 16 51 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.01 0.51 7.41 -2.39 -0.02 0.49 16 53 H 0.08 0.50 8.14 -2.39 -0.02 0.49 16 54 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 55 H 0.05 0.74 6.98 -2.39 -0.02 0.72 16 Total: -1.00 -89.32 409.56 4.44 -84.88 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.84 Total: 11.98 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 6.65 Total: 9.74 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -4.25 Total: -118.86 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -0.82 Total: -39.00 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.03 Total: 51.27 kcal Total: -89.32 4.44 -84.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717245986.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.258 kcal (2) G-P(sol) polarization free energy of solvation -89.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds