Wall clock time and date at job start Tue Mar 31 2020 21:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.46751 * 2 1 4 4 C 1.42905 * 113.99744 * 183.30420 * 3 2 1 5 5 H 1.08997 * 109.47002 * 338.18209 * 4 3 2 6 6 C 1.50703 * 109.46775 * 218.18519 * 4 3 2 7 7 O 1.21281 * 120.00377 * 353.30052 * 6 4 3 8 8 N 1.34784 * 119.99853 * 173.30007 * 6 4 3 9 9 C 1.46930 * 120.69839 * 355.85479 * 8 6 4 10 10 C 1.53197 * 108.91688 * 125.85211 * 9 8 6 11 11 C 1.53164 * 109.27049 * 55.23668 * 10 9 8 12 12 C 1.52240 * 109.62773 * 299.83666 * 11 10 9 13 13 C 1.54501 * 110.25000 * 297.04048 * 12 11 10 14 14 C 1.55026 * 101.52286 * 276.23185 * 13 12 11 15 15 N 1.47490 * 104.89974 * 323.64453 * 14 13 12 16 16 C 1.36941 * 125.65995 * 204.02636 * 15 14 13 17 17 H 1.07996 * 119.99789 * 179.97438 * 16 15 14 18 18 C 1.38815 * 120.00024 * 359.97438 * 16 15 14 19 19 N 1.31620 * 120.00043 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99885 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47398 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47203 * 120.00473 * 20 18 16 23 23 H 1.48504 * 109.47044 * 240.00102 * 20 18 16 24 24 C 1.47183 * 108.67580 * 24.00750 * 15 14 13 25 25 C 1.47074 * 120.69914 * 175.87942 * 8 6 4 26 26 C 1.53000 * 109.47356 * 98.18487 * 4 3 2 27 27 C 1.53001 * 109.46755 * 294.12203 * 26 4 3 28 28 C 1.52998 * 109.47291 * 54.12257 * 26 4 3 29 29 H 1.08998 * 109.46983 * 299.99693 * 1 2 3 30 30 H 1.09001 * 109.47366 * 59.99972 * 1 2 3 31 31 H 1.09003 * 109.47305 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46983 * 240.00307 * 2 1 3 33 33 H 1.09001 * 109.47366 * 120.00028 * 2 1 3 34 34 H 1.09001 * 109.56608 * 6.02494 * 9 8 6 35 35 H 1.08991 * 109.65967 * 245.73854 * 9 8 6 36 36 H 1.08995 * 109.50403 * 295.29581 * 10 9 8 37 37 H 1.09005 * 109.53591 * 175.19384 * 10 9 8 38 38 H 1.08997 * 109.43762 * 59.87739 * 11 10 9 39 39 H 1.09001 * 109.43698 * 179.80125 * 11 10 9 40 40 H 1.08998 * 111.01772 * 34.29451 * 13 12 11 41 41 H 1.09004 * 111.01291 * 158.17285 * 13 12 11 42 42 H 1.08999 * 110.35579 * 204.79094 * 14 13 12 43 43 H 1.08997 * 110.44389 * 82.54256 * 14 13 12 44 44 H 0.96997 * 120.00149 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.91260 * 239.12454 * 24 15 14 46 46 H 1.09001 * 109.90973 * 117.86250 * 24 15 14 47 47 H 1.08994 * 109.57968 * 352.22566 * 25 8 6 48 48 H 1.09002 * 109.57387 * 112.61902 * 25 8 6 49 49 H 1.08997 * 109.47182 * 174.12461 * 26 4 3 50 50 H 1.08997 * 109.46813 * 63.56378 * 27 26 4 51 51 H 1.09004 * 109.46546 * 183.55676 * 27 26 4 52 52 H 1.08991 * 109.47274 * 303.55808 * 27 26 4 53 53 H 1.09000 * 109.47055 * 59.99733 * 28 26 4 54 54 H 1.08991 * 109.46920 * 180.02562 * 28 26 4 55 55 H 1.09005 * 109.46901 * 300.00334 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4288 1.4609 -0.0752 5 1 3.8859 0.5316 0.2646 6 6 3.8890 2.5970 0.8014 7 8 3.0743 3.3216 1.3326 8 7 5.2061 2.8079 0.9952 9 6 6.2037 1.8868 0.4339 10 6 7.2049 2.6892 -0.4034 11 6 7.8094 3.8006 0.4598 12 6 6.7044 4.7264 0.9491 13 6 6.0195 5.4214 -0.2488 14 6 6.9744 6.6164 -0.5009 15 7 7.4192 7.0361 0.8413 16 6 7.8757 8.2826 1.1775 17 1 8.1788 8.4909 2.1929 18 6 7.9489 9.2784 0.2132 19 7 7.5790 9.0247 -1.0243 20 14 8.5722 10.9785 0.6717 21 1 8.9225 11.0049 2.1144 22 1 9.7768 11.2985 -0.1356 23 1 7.5133 11.9838 0.4004 24 6 7.2906 5.8928 1.7593 25 6 5.6748 3.9645 1.7734 26 6 3.8428 1.7335 -1.5227 27 6 3.5067 0.5166 -2.3871 28 6 3.0876 2.9562 -2.0476 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.7065 1.1510 -0.1982 35 1 6.7289 1.3782 1.2422 36 1 6.6930 3.1302 -1.2586 37 1 7.9980 2.0290 -0.7546 38 1 8.3182 3.3585 1.3164 39 1 8.5250 4.3712 -0.1324 40 1 5.9826 4.7610 -1.1151 41 1 5.0214 5.7684 0.0190 42 1 6.4424 7.4291 -0.9953 43 1 7.8276 6.3017 -1.1018 44 1 7.6298 9.7206 -1.6980 45 1 6.6200 6.1490 2.5796 46 1 8.2706 5.6182 2.1497 47 1 4.8323 4.6178 2.0001 48 1 6.1319 3.6196 2.7009 49 1 4.9153 1.9235 -1.5642 50 1 2.4274 0.3647 -2.3964 51 1 3.8587 0.6856 -3.4048 52 1 3.9945 -0.3670 -1.9759 53 1 3.3270 3.8231 -1.4317 54 1 3.3823 3.1501 -3.0788 55 1 2.0151 2.7662 -2.0060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717245987.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:17 Heat of formation + Delta-G solvation = -79.187785 kcal Electronic energy + Delta-G solvation = -32498.721686 eV Core-core repulsion = 28535.470160 eV Total energy + Delta-G solvation = -3963.251526 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.92645 -40.31782 -38.79163 -37.35661 -35.79711 -34.67003 -33.11038 -32.13562 -31.84997 -30.45758 -28.68078 -28.13570 -27.24119 -26.21430 -25.09218 -23.60142 -23.34385 -22.06557 -21.70392 -20.61786 -19.50413 -18.66722 -18.14089 -17.87286 -17.18457 -16.89331 -16.62276 -16.34712 -16.12703 -15.75319 -15.32090 -15.05151 -14.81897 -14.75624 -14.61363 -14.33118 -14.08655 -13.88900 -13.73200 -13.51216 -13.28194 -13.21462 -13.15531 -13.03550 -12.97513 -12.91198 -12.82579 -12.42503 -12.22366 -12.18979 -12.11410 -12.02767 -11.92404 -11.88248 -11.70923 -11.52261 -11.47237 -11.34310 -11.11810 -10.79043 -10.75883 -10.24496 -9.58915 -8.89200 -7.78482 -5.22552 1.43860 1.45514 1.54516 1.55846 1.80275 2.48066 2.85058 3.30558 3.43872 3.62254 3.65927 3.70472 3.79875 3.86678 3.92195 4.13085 4.13883 4.22546 4.23247 4.27575 4.30468 4.40443 4.49021 4.51905 4.56287 4.62302 4.64670 4.72584 4.79448 4.80658 4.82572 4.86386 4.90516 4.93973 4.95841 4.98172 5.04280 5.04861 5.15874 5.18807 5.22730 5.28776 5.37047 5.42433 5.43826 5.49825 5.52233 5.53132 5.63865 5.81018 6.17378 6.28955 6.46924 7.09496 7.18654 7.77241 8.42022 9.23653 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019643 B = 0.002902 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.086782 B = 9646.580490 C = 9814.219627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 O -0.383 6.383 4 C 0.085 3.915 5 H 0.118 0.882 6 C 0.506 3.494 7 O -0.579 6.579 8 N -0.601 5.601 9 C 0.097 3.903 10 C -0.131 4.131 11 C -0.096 4.096 12 C -0.068 4.068 13 C -0.110 4.110 14 C 0.163 3.837 15 N -0.625 5.625 16 C -0.236 4.236 17 H 0.080 0.920 18 C -0.070 4.070 19 N -0.949 5.949 20 Si 0.981 3.019 21 H -0.266 1.266 22 H -0.290 1.290 23 H -0.294 1.294 24 C 0.143 3.857 25 C 0.139 3.861 26 C -0.111 4.111 27 C -0.145 4.145 28 C -0.140 4.140 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.061 0.939 43 H -0.006 1.006 44 H 0.246 0.754 45 H 0.017 0.983 46 H 0.034 0.966 47 H 0.056 0.944 48 H 0.086 0.914 49 H 0.100 0.900 50 H 0.058 0.942 51 H 0.070 0.930 52 H 0.081 0.919 53 H 0.019 0.981 54 H 0.066 0.934 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.616 -27.602 -1.590 28.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.035 4.035 3 O -0.302 6.302 4 C 0.024 3.976 5 H 0.136 0.864 6 C 0.295 3.705 7 O -0.458 6.458 8 N -0.334 5.334 9 C -0.024 4.024 10 C -0.169 4.169 11 C -0.133 4.133 12 C -0.069 4.069 13 C -0.149 4.149 14 C 0.038 3.962 15 N -0.351 5.351 16 C -0.366 4.366 17 H 0.098 0.902 18 C -0.262 4.262 19 N -0.600 5.600 20 Si 0.809 3.191 21 H -0.191 1.191 22 H -0.216 1.216 23 H -0.221 1.221 24 C 0.017 3.983 25 C 0.016 3.984 26 C -0.129 4.129 27 C -0.202 4.202 28 C -0.197 4.197 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.011 0.989 44 H 0.056 0.944 45 H 0.035 0.965 46 H 0.052 0.948 47 H 0.074 0.926 48 H 0.104 0.896 49 H 0.118 0.882 50 H 0.077 0.923 51 H 0.089 0.911 52 H 0.099 0.901 53 H 0.038 0.962 54 H 0.085 0.915 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.144 -26.897 -1.359 27.623 hybrid contribution 0.298 1.843 0.228 1.880 sum -5.846 -25.054 -1.131 25.752 Atomic orbital electron populations 1.21759 0.93452 1.03363 1.02211 1.22992 0.96182 0.82585 1.01722 1.88051 1.19084 1.28341 1.94681 1.22041 0.83769 0.96920 0.94852 0.86430 1.21216 0.81976 0.86369 0.80937 1.90687 1.54123 1.49804 1.51148 1.48137 1.05384 1.26806 1.53109 1.22240 0.89846 0.91468 0.98859 1.22015 0.99450 0.97434 0.97979 1.21309 0.95835 0.95852 1.00321 1.21225 0.95945 0.94419 0.95305 1.22749 0.96826 0.97228 0.98050 1.21615 0.93641 0.94328 0.86572 1.44835 1.76013 1.07764 1.06500 1.19499 1.34706 0.87149 0.95198 0.90201 1.25652 1.02760 1.02137 0.95661 1.70092 1.54932 1.32787 1.02142 0.84970 0.77037 0.79325 0.77776 1.19071 1.21640 1.22082 1.21370 0.97304 0.87110 0.92512 1.21244 0.96212 0.87254 0.93714 1.21740 1.01440 0.97389 0.92365 1.21930 1.02280 0.96096 0.99881 1.21672 1.00826 0.96636 1.00609 0.93497 0.92444 0.88549 0.90281 0.92567 0.86980 0.88422 0.92155 0.87239 0.89938 0.93359 0.90274 0.95149 0.92140 0.98854 0.94448 0.96519 0.94792 0.92567 0.89616 0.88247 0.92254 0.91122 0.90050 0.96179 0.91482 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.04 0.61 6.04 71.98 0.43 1.04 16 3 O -0.38 -9.18 8.45 -130.03 -1.10 -10.28 16 4 C 0.09 1.72 1.53 29.85 0.05 1.77 16 5 H 0.12 1.47 6.98 -2.39 -0.02 1.45 16 6 C 0.51 14.77 6.10 87.66 0.53 15.30 16 7 O -0.58 -23.54 15.96 15.92 0.25 -23.28 16 8 N -0.60 -14.89 2.82 -820.18 -2.32 -17.21 16 9 C 0.10 1.43 5.45 86.36 0.47 1.90 16 10 C -0.13 -2.32 5.69 30.72 0.17 -2.15 16 11 C -0.10 -2.50 4.55 30.40 0.14 -2.36 16 12 C -0.07 -2.29 0.55 -51.93 -0.03 -2.32 16 13 C -0.11 -4.48 5.73 31.80 0.18 -4.30 16 14 C 0.16 8.45 5.57 86.88 0.48 8.93 16 15 N -0.63 -33.57 3.40 -692.51 -2.36 -35.92 16 16 C -0.24 -13.77 10.28 84.03 0.86 -12.91 16 17 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 18 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 19 N -0.95 -58.64 10.09 21.65 0.22 -58.42 16 20 Si 0.98 47.25 29.55 68.60 2.03 49.28 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 24 C 0.14 6.06 6.43 86.47 0.56 6.61 16 25 C 0.14 4.25 4.96 86.04 0.43 4.67 16 26 C -0.11 -1.90 2.29 -10.79 -0.02 -1.93 16 27 C -0.14 -1.54 8.09 71.98 0.58 -0.96 16 28 C -0.14 -3.41 8.81 71.98 0.63 -2.78 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 0.78 5.63 -2.39 -0.01 0.77 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.11 1.04 4.53 -2.39 -0.01 1.02 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.26 5.59 -2.39 -0.01 1.25 16 37 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.05 1.54 7.49 -2.39 -0.02 1.52 16 40 H 0.08 2.84 6.00 -2.39 -0.01 2.83 16 41 H 0.03 1.38 7.90 -2.38 -0.02 1.36 16 42 H 0.06 3.65 5.88 -2.39 -0.01 3.63 16 43 H -0.01 -0.35 7.76 -2.39 -0.02 -0.37 16 44 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.02 0.73 7.80 -2.39 -0.02 0.71 16 46 H 0.03 1.38 7.83 -2.39 -0.02 1.36 16 47 H 0.06 2.15 6.90 -2.39 -0.02 2.14 16 48 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 49 H 0.10 1.52 4.96 -2.39 -0.01 1.50 16 50 H 0.06 0.70 6.32 -2.39 -0.02 0.68 16 51 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 52 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 53 H 0.02 0.62 7.41 -2.39 -0.02 0.60 16 54 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 55 H 0.05 1.41 7.54 -2.38 -0.02 1.39 16 Total: -1.00 -80.38 401.60 4.27 -76.12 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.86 Total: 14.21 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 6.68 Total: 5.51 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -4.45 Total: -111.55 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.84 Total: -33.56 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -80.38 4.27 -76.12 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717245987.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.071 kcal (2) G-P(sol) polarization free energy of solvation -80.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds