Wall clock time and date at job start Tue Mar 31 2020 22:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 120.00484 * 2 1 4 4 C 1.50701 * 119.99487 * 180.02562 * 2 1 3 5 5 H 1.08996 * 109.47261 * 4.99581 * 4 2 1 6 6 C 1.53003 * 109.46951 * 244.99661 * 4 2 1 7 7 C 1.50700 * 109.47271 * 174.99825 * 6 4 2 8 8 O 1.21284 * 119.99630 * 0.02562 * 7 6 4 9 9 N 1.34779 * 120.00251 * 180.02562 * 7 6 4 10 10 C 1.46497 * 120.00045 * 180.02562 * 9 7 6 11 11 H 1.09009 * 109.45858 * 324.96721 * 10 9 7 12 12 C 1.53036 * 109.46425 * 84.92620 * 10 9 7 13 13 C 1.53187 * 109.31495 * 181.38528 * 12 10 9 14 14 N 1.46931 * 108.77621 * 305.36745 * 13 12 10 15 15 C 1.36937 * 120.63026 * 233.58469 * 14 13 12 16 16 H 1.08003 * 119.99789 * 152.31549 * 15 14 13 17 17 C 1.38811 * 120.00236 * 332.31704 * 15 14 13 18 18 N 1.31618 * 119.99998 * 342.59067 * 17 15 14 19 19 Si 1.86803 * 120.00164 * 162.59122 * 17 15 14 20 20 H 1.48496 * 109.46941 * 94.34670 * 19 17 15 21 21 H 1.48503 * 109.46944 * 214.34845 * 19 17 15 22 22 H 1.48501 * 109.47019 * 334.34826 * 19 17 15 23 23 C 1.46924 * 118.73542 * 53.60687 * 14 13 12 24 24 C 1.53041 * 109.45933 * 205.00000 * 10 9 7 25 25 C 1.53001 * 109.49269 * 298.56187 * 24 10 9 26 26 C 1.52993 * 109.50089 * 58.65831 * 24 10 9 27 27 O 1.42896 * 109.47334 * 124.99955 * 4 2 1 28 28 C 1.42902 * 113.99748 * 270.00047 * 27 4 2 29 29 C 1.53003 * 109.46855 * 179.97438 * 28 27 4 30 30 H 1.07993 * 120.00533 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99579 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47204 * 270.00002 * 3 2 1 33 33 H 1.08995 * 109.47265 * 29.99795 * 3 2 1 34 34 H 1.08998 * 109.47220 * 150.00112 * 3 2 1 35 35 H 1.08990 * 109.47382 * 295.00132 * 6 4 2 36 36 H 1.09002 * 109.47160 * 55.00108 * 6 4 2 37 37 H 0.96995 * 119.99888 * 359.97438 * 9 7 6 38 38 H 1.09007 * 109.50164 * 301.33933 * 12 10 9 39 39 H 1.09006 * 109.49546 * 61.43392 * 12 10 9 40 40 H 1.08999 * 109.58825 * 185.57844 * 13 12 10 41 41 H 1.09000 * 109.59062 * 65.15192 * 13 12 10 42 42 H 0.97002 * 120.00361 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.58362 * 186.60290 * 23 14 13 44 44 H 1.08995 * 109.70365 * 66.25401 * 23 14 13 45 45 H 1.08999 * 109.47468 * 60.00100 * 25 24 10 46 46 H 1.09001 * 109.47055 * 180.02562 * 25 24 10 47 47 H 1.08998 * 109.47428 * 299.99694 * 25 24 10 48 48 H 1.09002 * 109.47220 * 59.99685 * 26 24 10 49 49 H 1.08991 * 109.47389 * 180.02562 * 26 24 10 50 50 H 1.09006 * 109.47257 * 300.00330 * 26 24 10 51 51 H 1.09001 * 109.47067 * 299.99187 * 28 27 4 52 52 H 1.08994 * 109.47451 * 59.99879 * 28 27 4 53 53 H 1.09002 * 109.47124 * 299.99605 * 29 28 27 54 54 H 1.09000 * 109.47604 * 59.99734 * 29 28 27 55 55 H 1.09009 * 109.46891 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 1 1.3584 -2.1316 -0.0904 6 6 2.8464 -1.4426 1.3067 7 6 3.5007 -2.7991 1.3602 8 8 3.3554 -3.5790 0.4427 9 7 4.2472 -3.1457 2.4274 10 6 4.8837 -4.4641 2.4791 11 1 4.2350 -5.1995 2.0030 12 6 6.2234 -4.4130 1.7411 13 6 6.8697 -5.8015 1.7674 14 7 6.9662 -6.2519 3.1626 15 6 8.1650 -6.6624 3.6819 16 1 8.3567 -6.5651 4.7403 17 6 9.1338 -7.2036 2.8480 18 7 8.8028 -7.6398 1.6511 19 14 10.9073 -7.3128 3.4245 20 1 11.1540 -8.6525 4.0156 21 1 11.8170 -7.1064 2.2689 22 1 11.1607 -6.2663 4.4471 23 6 5.7520 -6.2539 3.9898 24 6 5.1182 -4.8602 3.9387 25 6 6.0569 -3.8478 4.5980 26 6 3.7820 -4.8792 4.6837 27 8 2.9708 -1.3310 -1.1042 28 6 2.4136 -1.8757 -2.3021 29 6 3.4677 -1.8532 -3.4109 30 1 -0.5401 -0.9352 0.0004 31 1 -0.5400 0.9354 0.0004 32 1 2.2453 1.6196 -1.0276 33 1 1.4746 2.0647 0.5138 34 1 3.0160 1.1746 0.5138 35 1 3.6116 -0.6680 1.3551 36 1 2.1657 -1.3341 2.1511 37 1 4.3637 -2.5218 3.1610 38 1 6.0581 -4.1081 0.7076 39 1 6.8818 -3.6958 2.2315 40 1 7.8670 -5.7487 1.3306 41 1 6.2564 -6.5010 1.1993 42 1 9.4799 -8.0177 1.0682 43 1 6.0118 -6.4996 5.0195 44 1 5.0466 -6.9905 3.6053 45 1 5.6068 -2.8558 4.5587 46 1 6.2240 -4.1305 5.6373 47 1 7.0090 -3.8360 4.0675 48 1 3.1145 -5.6017 4.2141 49 1 3.9496 -5.1609 5.7231 50 1 3.3300 -3.8881 4.6445 51 1 2.0979 -2.9032 -2.1214 52 1 1.5536 -1.2795 -2.6067 53 1 3.7831 -0.8256 -3.5915 54 1 4.3281 -2.4492 -3.1066 55 1 3.0428 -2.2692 -4.3245 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717309977.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:02 Heat of formation + Delta-G solvation = -75.510189 kcal Electronic energy + Delta-G solvation = -31510.956317 eV Core-core repulsion = 27547.864264 eV Total energy + Delta-G solvation = -3963.092053 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.39198 -40.06320 -38.89537 -36.29929 -36.08668 -34.45277 -33.23244 -32.68976 -31.78364 -30.67628 -28.21384 -28.12014 -27.45935 -26.90786 -25.03242 -23.67767 -23.55155 -22.45611 -21.23818 -19.77291 -19.55022 -18.76792 -17.90702 -17.74893 -17.19768 -16.64350 -16.58765 -16.03541 -15.81719 -15.62742 -15.39076 -15.19281 -14.99983 -14.80513 -14.63533 -14.35607 -14.27013 -13.94122 -13.83980 -13.46451 -13.20124 -13.13381 -13.08833 -12.81785 -12.79237 -12.68408 -12.61318 -12.56115 -12.43897 -12.29189 -12.23953 -12.05976 -11.97393 -11.96804 -11.76775 -11.58959 -11.32279 -11.15673 -10.74789 -10.54946 -10.43988 -10.07057 -9.88305 -8.68583 -7.86216 -5.31446 1.21491 1.46392 1.48225 1.58092 1.78190 2.28545 2.51725 2.82147 3.29458 3.61152 3.69174 3.74199 3.93456 3.94819 3.99846 4.08284 4.15076 4.23294 4.34877 4.40559 4.45515 4.46881 4.48718 4.57638 4.66519 4.71366 4.75644 4.80827 4.85170 4.87052 4.87685 4.94646 4.97354 5.01884 5.03686 5.05654 5.07560 5.14113 5.20149 5.22807 5.23643 5.31002 5.41165 5.44614 5.61510 5.64896 5.65956 5.66504 5.74980 5.83737 6.36632 6.38686 6.70051 7.13853 7.41664 7.85267 8.38683 9.20726 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.002821 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.793570 B = 9924.372783 C =10933.971096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.155 4.155 3 C -0.110 4.110 4 C 0.138 3.862 5 H 0.056 0.944 6 C -0.128 4.128 7 C 0.508 3.492 8 O -0.579 6.579 9 N -0.710 5.710 10 C 0.179 3.821 11 H 0.048 0.952 12 C -0.132 4.132 13 C 0.186 3.814 14 N -0.601 5.601 15 C -0.253 4.253 16 H 0.073 0.927 17 C -0.056 4.056 18 N -0.939 5.939 19 Si 0.966 3.034 20 H -0.287 1.287 21 H -0.297 1.297 22 H -0.265 1.265 23 C 0.154 3.846 24 C -0.078 4.078 25 C -0.125 4.125 26 C -0.129 4.129 27 O -0.387 6.387 28 C 0.064 3.936 29 C -0.146 4.146 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.117 0.883 36 H 0.137 0.863 37 H 0.412 0.588 38 H 0.038 0.962 39 H 0.066 0.934 40 H 0.054 0.946 41 H -0.018 1.018 42 H 0.248 0.752 43 H 0.063 0.937 44 H 0.003 0.997 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.042 0.958 48 H 0.042 0.958 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.032 0.968 52 H 0.058 0.942 53 H 0.067 0.933 54 H 0.041 0.959 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.424 19.947 1.041 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.166 4.166 4 C 0.080 3.920 5 H 0.074 0.926 6 C -0.168 4.168 7 C 0.296 3.704 8 O -0.459 6.459 9 N -0.362 5.362 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.172 4.172 13 C 0.059 3.941 14 N -0.323 5.323 15 C -0.383 4.383 16 H 0.091 0.909 17 C -0.250 4.250 18 N -0.586 5.586 19 Si 0.795 3.205 20 H -0.214 1.214 21 H -0.223 1.223 22 H -0.190 1.190 23 C 0.028 3.972 24 C -0.080 4.080 25 C -0.182 4.182 26 C -0.186 4.186 27 O -0.306 6.306 28 C -0.013 4.013 29 C -0.203 4.203 30 H 0.116 0.884 31 H 0.137 0.863 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.135 0.865 36 H 0.154 0.846 37 H 0.249 0.751 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.000 1.000 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.021 0.979 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.088 0.912 50 H 0.094 0.906 51 H 0.051 0.949 52 H 0.076 0.924 53 H 0.086 0.914 54 H 0.060 0.940 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.231 19.386 0.318 25.938 hybrid contribution 1.040 -0.879 -0.181 1.374 sum -16.191 18.507 0.136 24.590 Atomic orbital electron populations 1.23945 0.94719 1.02963 0.99624 1.22211 0.95758 0.95999 1.01606 1.20742 1.00242 0.93480 1.02183 1.20826 0.90622 0.94328 0.86218 0.92555 1.21862 1.02017 0.93826 0.99054 1.21170 0.78304 0.89664 0.81303 1.90697 1.62866 1.54376 1.37933 1.46051 1.50851 1.17381 1.21942 1.20504 0.91991 0.84327 0.95835 0.93368 1.22343 0.97179 0.98995 0.98654 1.20418 0.98066 0.90189 0.85422 1.44230 1.04709 1.74593 1.08811 1.19514 0.91772 1.33184 0.93878 0.90945 1.25834 1.03035 0.98643 0.97526 1.70219 1.33168 1.44327 1.10857 0.85276 0.80268 0.77929 0.77073 1.21373 1.22346 1.18964 1.21095 0.87453 0.93601 0.95045 1.21184 0.96933 0.96891 0.93013 1.21717 0.98748 0.97594 1.00139 1.21741 0.94376 1.02419 1.00087 1.87882 1.39490 1.83299 1.19956 1.22432 0.96848 0.96711 0.85295 1.21718 0.98671 1.02706 0.97244 0.88437 0.86305 0.91972 0.90388 0.91736 0.86521 0.84559 0.75055 0.94315 0.91508 0.92763 0.99967 0.94306 0.91836 0.97928 0.91009 0.92234 0.93850 0.93855 0.91218 0.90643 0.94928 0.92416 0.91409 0.93983 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 13.91 67.78 0.94 -1.33 16 2 C -0.16 -2.44 5.05 -16.49 -0.08 -2.52 16 3 C -0.11 -1.45 9.84 71.23 0.70 -0.75 16 4 C 0.14 2.95 1.86 29.85 0.06 3.01 16 5 H 0.06 1.35 7.25 -2.39 -0.02 1.34 16 6 C -0.13 -2.38 5.22 29.85 0.16 -2.23 16 7 C 0.51 14.29 7.67 87.66 0.67 14.96 16 8 O -0.58 -22.21 15.08 10.76 0.16 -22.05 16 9 N -0.71 -18.39 4.29 -442.40 -1.90 -20.29 16 10 C 0.18 6.18 1.57 45.02 0.07 6.25 16 11 H 0.05 2.00 7.58 -2.38 -0.02 1.98 16 12 C -0.13 -5.48 5.31 30.67 0.16 -5.31 16 13 C 0.19 9.61 5.31 86.36 0.46 10.07 16 14 N -0.60 -30.35 2.43 -699.11 -1.70 -32.05 16 15 C -0.25 -13.85 9.58 84.03 0.81 -13.05 16 16 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 17 C -0.06 -3.15 4.91 84.86 0.42 -2.73 16 18 N -0.94 -57.50 11.19 21.65 0.24 -57.26 16 19 Si 0.97 45.37 29.59 68.60 2.03 47.40 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 C 0.15 6.33 5.19 86.36 0.45 6.78 16 24 C -0.08 -2.43 0.56 -52.11 -0.03 -2.46 16 25 C -0.12 -3.49 7.83 71.98 0.56 -2.93 16 26 C -0.13 -3.04 8.31 71.98 0.60 -2.44 16 27 O -0.39 -10.32 9.07 -135.18 -1.23 -11.55 16 28 C 0.06 1.54 6.46 71.98 0.46 2.00 16 29 C -0.15 -3.22 10.28 71.98 0.74 -2.48 16 30 H 0.10 1.26 7.84 -2.91 -0.02 1.23 16 31 H 0.12 1.12 8.04 -2.91 -0.02 1.09 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.74 8.06 -2.39 -0.02 0.72 16 34 H 0.06 0.86 7.02 -2.39 -0.02 0.84 16 35 H 0.12 1.85 7.19 -2.39 -0.02 1.83 16 36 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.41 7.67 6.66 -92.71 -0.62 7.05 16 38 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.07 2.67 6.34 -2.38 -0.02 2.66 16 40 H 0.05 3.16 6.04 -2.39 -0.01 3.15 16 41 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 42 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 43 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 44 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.07 1.47 6.58 -2.39 -0.02 1.45 16 46 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.04 1.52 5.97 -2.39 -0.01 1.50 16 48 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.07 1.39 7.36 -2.38 -0.02 1.37 16 51 H 0.03 0.90 8.09 -2.39 -0.02 0.88 16 52 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 54 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 55 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -73.31 423.67 4.98 -68.33 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.23 Total: 22.61 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 7.14 Total: 4.86 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -3.35 Total: -109.60 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -1.06 Total: -33.59 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -73.31 4.98 -68.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717309977.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.183 kcal (2) G-P(sol) polarization free energy of solvation -73.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds