Wall clock time and date at job start Tue Mar 31 2020 22:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00454 * 2 1 4 4 C 1.50701 * 119.99911 * 179.97438 * 2 1 3 5 5 H 1.09008 * 109.47391 * 355.00397 * 4 2 1 6 6 C 1.53008 * 109.47060 * 114.99694 * 4 2 1 7 7 C 1.50697 * 109.46839 * 185.00008 * 6 4 2 8 8 O 1.21280 * 120.00861 * 0.02562 * 7 6 4 9 9 N 1.34784 * 119.99782 * 180.02562 * 7 6 4 10 10 C 1.46499 * 119.99852 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.45426 * 35.03513 * 10 9 7 12 12 C 1.53041 * 109.45849 * 275.06360 * 10 9 7 13 13 C 1.53628 * 109.24079 * 178.49360 * 12 10 9 14 14 N 1.46924 * 108.54468 * 54.85804 * 13 12 10 15 15 C 1.36940 * 120.62966 * 126.36789 * 14 13 12 16 16 H 1.07997 * 119.99497 * 209.01787 * 15 14 13 17 17 C 1.38810 * 119.99874 * 29.01523 * 15 14 13 18 18 N 1.31620 * 120.00176 * 24.35520 * 17 15 14 19 19 Si 1.86794 * 119.99873 * 204.35023 * 17 15 14 20 20 H 1.48505 * 109.47398 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.47183 * 300.00091 * 19 17 15 22 22 H 1.48497 * 109.47443 * 60.00253 * 19 17 15 23 23 C 1.46926 * 118.73860 * 306.09700 * 14 13 12 24 24 C 1.53048 * 109.45868 * 155.00216 * 10 9 7 25 25 C 1.52997 * 109.49917 * 61.42869 * 24 10 9 26 26 C 1.53001 * 109.49479 * 301.33149 * 24 10 9 27 27 O 1.42901 * 109.47349 * 234.99723 * 4 2 1 28 28 C 1.42901 * 113.99507 * 90.00349 * 27 4 2 29 29 C 1.53000 * 109.46837 * 180.02562 * 28 27 4 30 30 H 1.08004 * 119.99960 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.99877 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.47067 * 270.00639 * 3 2 1 33 33 H 1.08999 * 109.46617 * 29.99584 * 3 2 1 34 34 H 1.08996 * 109.47321 * 149.99900 * 3 2 1 35 35 H 1.09000 * 109.46937 * 65.00385 * 6 4 2 36 36 H 1.08999 * 109.47172 * 304.99912 * 6 4 2 37 37 H 0.97002 * 119.99911 * 0.02562 * 9 7 6 38 38 H 1.08998 * 109.50037 * 298.56894 * 12 10 9 39 39 H 1.09001 * 109.49814 * 58.63477 * 12 10 9 40 40 H 1.09000 * 109.73601 * 295.11853 * 13 12 10 41 41 H 1.09007 * 109.66166 * 174.55395 * 13 12 10 42 42 H 0.97001 * 119.99763 * 5.76471 * 18 17 15 43 43 H 1.08996 * 109.58384 * 173.64716 * 23 14 13 44 44 H 1.09001 * 109.58261 * 294.07006 * 23 14 13 45 45 H 1.08996 * 109.47183 * 179.83577 * 25 24 10 46 46 H 1.08997 * 109.47014 * 299.84011 * 25 24 10 47 47 H 1.09005 * 109.46814 * 59.84080 * 25 24 10 48 48 H 1.08998 * 109.47373 * 300.16719 * 26 24 10 49 49 H 1.09007 * 109.47048 * 60.16395 * 26 24 10 50 50 H 1.09001 * 109.47089 * 180.16226 * 26 24 10 51 51 H 1.09003 * 109.47053 * 299.99859 * 28 27 4 52 52 H 1.08992 * 109.47869 * 59.99901 * 28 27 4 53 53 H 1.08996 * 109.47769 * 59.99379 * 29 28 27 54 54 H 1.09001 * 109.47254 * 180.02562 * 29 28 27 55 55 H 1.09003 * 109.46808 * 299.99549 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3585 -2.1317 0.0905 6 6 2.8464 -1.4426 -1.3068 7 6 3.5008 -2.7990 -1.3601 8 8 3.3550 -3.5793 -0.4431 9 7 4.2481 -3.1452 -2.4270 10 6 4.8838 -4.4641 -2.4791 11 1 4.2341 -5.1993 -2.0043 12 6 6.2229 -4.4142 -1.7399 13 6 6.8674 -5.8085 -1.7650 14 7 6.9660 -6.2526 -3.1621 15 6 8.1650 -6.6634 -3.6807 16 1 8.3675 -6.5418 -4.7345 17 6 9.1199 -7.2360 -2.8518 18 7 8.7532 -7.8203 -1.7308 19 14 10.9253 -7.1775 -3.3274 20 1 11.7347 -7.8548 -2.2826 21 1 11.1175 -7.8692 -4.6274 22 1 11.3593 -5.7627 -3.4505 23 6 5.7525 -6.2532 -3.9905 24 6 5.1194 -4.8592 -3.9388 25 6 6.0592 -3.8468 -4.5966 26 6 3.7838 -4.8769 -4.6850 27 8 2.9710 -1.3308 1.1042 28 6 2.4139 -1.8757 2.3020 29 6 3.4679 -1.8530 3.4108 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 2.2452 1.6197 -1.0277 33 1 1.4745 2.0647 0.5138 34 1 3.0160 1.1747 0.5138 35 1 3.6116 -0.6679 -1.3552 36 1 2.1656 -1.3342 -2.1511 37 1 4.3651 -2.5211 -3.1603 38 1 6.8821 -3.6971 -2.2292 39 1 6.0570 -4.1095 -0.7066 40 1 6.2511 -6.5090 -1.2015 41 1 7.8639 -5.7600 -1.3258 42 1 7.8113 -7.9249 -1.5240 43 1 6.0131 -6.4983 -5.0200 44 1 5.0472 -6.9894 -3.6047 45 1 6.2291 -4.1302 -5.6352 46 1 5.6084 -2.8552 -4.5595 47 1 7.0099 -3.8339 -4.0634 48 1 3.1145 -5.5973 -4.2148 49 1 3.3337 -3.8848 -4.6479 50 1 3.9518 -5.1612 -5.7238 51 1 1.5537 -1.2794 2.6067 52 1 2.0981 -2.9031 2.1214 53 1 3.7834 -0.8255 3.5914 54 1 3.0432 -2.2691 4.3244 55 1 4.3283 -2.4491 3.1064 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717309978.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:06 Heat of formation + Delta-G solvation = -79.682557 kcal Electronic energy + Delta-G solvation = -31554.092133 eV Core-core repulsion = 27590.819152 eV Total energy + Delta-G solvation = -3963.272981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.47348 -40.14466 -38.96909 -36.58640 -36.09298 -34.55561 -33.24953 -32.69204 -31.76258 -30.69824 -28.22077 -28.19245 -27.37834 -26.90122 -25.10692 -23.70931 -23.64418 -22.43649 -21.29430 -19.80405 -19.63616 -19.41718 -17.94641 -17.81369 -17.21271 -16.64176 -16.24532 -16.11746 -15.96003 -15.61812 -15.44546 -15.33188 -15.23334 -14.98365 -14.66647 -14.37688 -14.30105 -13.96439 -13.93616 -13.60987 -13.43577 -13.15025 -12.91568 -12.87083 -12.73104 -12.67438 -12.61379 -12.54822 -12.50066 -12.41088 -12.31870 -11.99546 -11.93178 -11.79780 -11.78595 -11.60375 -11.42644 -11.18881 -10.81088 -10.48264 -10.44793 -10.08232 -9.97123 -8.92837 -8.23584 -5.40960 1.20145 1.57860 1.65812 1.73158 1.84075 2.22161 2.66096 2.79225 3.22390 3.49047 3.61585 3.66773 3.87241 3.91209 3.92677 3.98419 4.12662 4.21000 4.26173 4.32067 4.33808 4.43056 4.46768 4.50544 4.53641 4.56467 4.72222 4.74033 4.76552 4.82259 4.85240 4.85422 4.91207 4.93953 4.94854 4.99740 5.04135 5.05650 5.12722 5.13866 5.19364 5.21261 5.22061 5.27928 5.36637 5.56454 5.63180 5.64461 5.82853 5.86042 6.33789 6.37787 6.64161 7.04303 7.35865 7.77037 8.23481 9.00833 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015618 B = 0.002834 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.355366 B = 9878.908751 C =10862.605755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.155 4.155 3 C -0.113 4.113 4 C 0.138 3.862 5 H 0.056 0.944 6 C -0.127 4.127 7 C 0.508 3.492 8 O -0.579 6.579 9 N -0.710 5.710 10 C 0.179 3.821 11 H 0.050 0.950 12 C -0.128 4.128 13 C 0.166 3.834 14 N -0.608 5.608 15 C -0.346 4.346 16 H 0.057 0.943 17 C -0.080 4.080 18 N -0.946 5.946 19 Si 1.115 2.885 20 H -0.296 1.296 21 H -0.273 1.273 22 H -0.278 1.278 23 C 0.156 3.844 24 C -0.078 4.078 25 C -0.124 4.124 26 C -0.129 4.129 27 O -0.387 6.387 28 C 0.064 3.936 29 C -0.146 4.146 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.137 0.863 37 H 0.412 0.588 38 H 0.068 0.932 39 H 0.042 0.958 40 H -0.009 1.009 41 H 0.043 0.957 42 H 0.251 0.749 43 H 0.060 0.940 44 H 0.003 0.997 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.041 0.959 48 H 0.043 0.957 49 H 0.077 0.923 50 H 0.068 0.932 51 H 0.058 0.942 52 H 0.032 0.968 53 H 0.067 0.933 54 H 0.087 0.913 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.556 20.586 -1.080 27.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.170 4.170 4 C 0.080 3.920 5 H 0.074 0.926 6 C -0.167 4.167 7 C 0.296 3.704 8 O -0.458 6.458 9 N -0.362 5.362 10 C 0.074 3.926 11 H 0.068 0.932 12 C -0.168 4.168 13 C 0.039 3.961 14 N -0.332 5.332 15 C -0.476 4.476 16 H 0.074 0.926 17 C -0.276 4.276 18 N -0.589 5.589 19 Si 0.939 3.061 20 H -0.223 1.223 21 H -0.199 1.199 22 H -0.204 1.204 23 C 0.030 3.970 24 C -0.080 4.080 25 C -0.181 4.181 26 C -0.186 4.186 27 O -0.306 6.306 28 C -0.013 4.013 29 C -0.203 4.203 30 H 0.115 0.885 31 H 0.137 0.863 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.155 0.845 37 H 0.250 0.750 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.009 0.991 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.021 0.979 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.096 0.904 50 H 0.087 0.913 51 H 0.076 0.924 52 H 0.051 0.949 53 H 0.086 0.914 54 H 0.105 0.895 55 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.927 19.718 0.024 25.347 hybrid contribution -1.518 -0.412 -0.273 1.597 sum -17.445 19.306 -0.249 26.022 Atomic orbital electron populations 1.23941 0.94737 1.02943 0.99709 1.22205 0.95738 0.96011 1.01572 1.20765 1.00082 0.93291 1.02843 1.20816 0.90626 0.94361 0.86190 0.92556 1.21853 1.02013 0.93739 0.99070 1.21195 0.78233 0.89711 0.81229 1.90695 1.62841 1.54334 1.37927 1.46036 1.50881 1.17240 1.22082 1.20473 0.91879 0.84572 0.95672 0.93173 1.22330 0.97299 0.98107 0.99038 1.20718 0.97502 0.91951 0.85948 1.44276 1.05215 1.75089 1.08579 1.20194 0.94124 1.37357 0.95928 0.92564 1.27242 1.08978 0.94660 0.96687 1.70903 1.18323 1.40865 1.28773 0.82865 0.71093 0.76789 0.75338 1.22267 1.19896 1.20426 1.21092 0.87201 0.93779 0.94890 1.21176 0.96976 0.96664 0.93162 1.21708 0.98683 0.97682 1.00064 1.21744 0.94282 1.02569 1.00028 1.87878 1.39487 1.83274 1.19978 1.22433 0.96869 0.96707 0.85276 1.21717 0.98656 1.02723 0.97248 0.88463 0.86335 0.90066 0.91146 0.92464 0.86505 0.84533 0.74997 0.91321 0.93879 0.99103 0.93797 0.93912 0.92193 0.97883 0.92421 0.90795 0.93977 0.93765 0.90441 0.91328 0.92405 0.94918 0.91398 0.89474 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 13.91 67.78 0.94 -1.31 16 2 C -0.15 -2.39 5.05 -16.49 -0.08 -2.47 16 3 C -0.11 -1.46 9.73 71.24 0.69 -0.77 16 4 C 0.14 2.90 1.86 29.85 0.06 2.95 16 5 H 0.06 1.33 7.25 -2.38 -0.02 1.31 16 6 C -0.13 -2.31 5.25 29.85 0.16 -2.15 16 7 C 0.51 14.01 7.67 87.65 0.67 14.69 16 8 O -0.58 -21.77 15.08 10.74 0.16 -21.61 16 9 N -0.71 -18.04 4.29 -442.39 -1.90 -19.94 16 10 C 0.18 6.11 1.57 45.02 0.07 6.18 16 11 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16 12 C -0.13 -5.22 5.32 30.82 0.16 -5.06 16 13 C 0.17 8.40 4.72 86.51 0.41 8.81 16 14 N -0.61 -30.74 2.27 -698.25 -1.58 -32.32 16 15 C -0.35 -19.31 9.48 84.03 0.80 -18.52 16 16 H 0.06 3.08 7.94 -2.91 -0.02 3.06 16 17 C -0.08 -4.61 4.69 84.86 0.40 -4.22 16 18 N -0.95 -59.72 12.45 21.65 0.27 -59.45 16 19 Si 1.11 51.58 29.98 68.60 2.06 53.63 16 20 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 23 C 0.16 6.48 5.19 86.36 0.45 6.93 16 24 C -0.08 -2.42 0.56 -52.10 -0.03 -2.45 16 25 C -0.12 -3.52 7.83 71.98 0.56 -2.96 16 26 C -0.13 -3.04 8.31 71.98 0.60 -2.44 16 27 O -0.39 -10.15 8.76 -135.21 -1.18 -11.34 16 28 C 0.06 1.51 6.46 71.98 0.46 1.98 16 29 C -0.15 -3.17 10.28 71.98 0.74 -2.43 16 30 H 0.10 1.24 7.84 -2.91 -0.02 1.21 16 31 H 0.12 1.10 8.04 -2.91 -0.02 1.08 16 32 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.07 0.76 8.06 -2.39 -0.02 0.74 16 34 H 0.06 0.92 7.72 -2.39 -0.02 0.90 16 35 H 0.12 1.81 8.04 -2.39 -0.02 1.79 16 36 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.41 7.53 6.66 -92.71 -0.62 6.91 16 38 H 0.07 2.73 6.33 -2.39 -0.02 2.71 16 39 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 40 H -0.01 -0.49 7.86 -2.39 -0.02 -0.51 16 41 H 0.04 2.51 6.38 -2.38 -0.02 2.50 16 42 H 0.25 16.34 6.71 -92.71 -0.62 15.72 16 43 H 0.06 2.44 7.93 -2.39 -0.02 2.43 16 44 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.07 1.52 6.58 -2.39 -0.02 1.50 16 47 H 0.04 1.50 5.97 -2.38 -0.01 1.48 16 48 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.08 1.41 7.37 -2.38 -0.02 1.40 16 50 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.03 0.89 8.08 -2.39 -0.02 0.87 16 53 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 54 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 55 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -74.82 423.95 5.25 -69.57 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.37 Total: 24.69 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 7.06 Total: -3.23 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -3.21 Total: -111.71 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -1.02 Total: -32.95 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.06 Total: 53.63 kcal Total: -74.82 5.25 -69.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717309978.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.116 kcal (2) G-P(sol) polarization free energy of solvation -74.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds