Wall clock time and date at job start Tue Mar 31 2020 22:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50695 * 120.00531 * 2 1 4 4 C 1.50703 * 119.99540 * 180.02562 * 2 1 3 5 5 H 1.08999 * 109.47088 * 4.99791 * 4 2 1 6 6 C 1.52998 * 109.47064 * 245.00164 * 4 2 1 7 7 C 1.50704 * 109.47006 * 175.00253 * 6 4 2 8 8 O 1.21278 * 119.99902 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99853 * 179.97438 * 7 6 4 10 10 C 1.46503 * 119.99994 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.45641 * 34.97927 * 10 9 7 12 12 C 1.53037 * 109.46310 * 275.00733 * 10 9 7 13 13 C 1.53184 * 109.31444 * 178.62822 * 12 10 9 14 14 N 1.46920 * 108.77627 * 54.63229 * 13 12 10 15 15 C 1.36939 * 120.63295 * 126.37198 * 14 13 12 16 16 H 1.07998 * 120.00413 * 205.09419 * 15 14 13 17 17 C 1.38817 * 119.99835 * 25.09389 * 15 14 13 18 18 N 1.31621 * 119.99810 * 202.47014 * 17 15 14 19 19 Si 1.86795 * 119.99952 * 22.46897 * 17 15 14 20 20 H 1.48499 * 109.47444 * 264.61738 * 19 17 15 21 21 H 1.48506 * 109.47165 * 24.62071 * 19 17 15 22 22 H 1.48505 * 109.47090 * 144.61735 * 19 17 15 23 23 C 1.46928 * 118.74025 * 306.64341 * 14 13 12 24 24 C 1.52759 * 109.00631 * 53.30891 * 23 14 13 25 25 C 1.52998 * 109.56481 * 185.55129 * 24 23 14 26 26 C 1.53001 * 109.35838 * 65.49694 * 24 23 14 27 27 O 1.42898 * 109.47090 * 124.99776 * 4 2 1 28 28 C 1.42898 * 114.00427 * 270.00123 * 27 4 2 29 29 C 1.52996 * 109.47575 * 179.97438 * 28 27 4 30 30 H 1.07999 * 120.00288 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99398 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.47600 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47264 * 300.00346 * 3 2 1 34 34 H 1.09003 * 109.46907 * 60.00392 * 3 2 1 35 35 H 1.08993 * 109.47300 * 54.99727 * 6 4 2 36 36 H 1.09003 * 109.46723 * 294.99955 * 6 4 2 37 37 H 0.96999 * 119.99826 * 0.02562 * 9 7 6 38 38 H 1.09006 * 109.49800 * 58.67295 * 12 10 9 39 39 H 1.08999 * 109.52635 * 298.59624 * 12 10 9 40 40 H 1.09004 * 109.58458 * 294.84378 * 13 12 10 41 41 H 1.08996 * 109.59178 * 174.42399 * 13 12 10 42 42 H 0.97000 * 119.99332 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.58891 * 173.14477 * 23 14 13 44 44 H 1.09000 * 109.58606 * 293.57290 * 23 14 13 45 45 H 1.09001 * 109.46960 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.47370 * 299.96573 * 25 24 23 47 47 H 1.09000 * 109.47176 * 59.97216 * 25 24 23 48 48 H 1.08996 * 109.47479 * 300.15867 * 26 24 23 49 49 H 1.09002 * 109.47182 * 60.16493 * 26 24 23 50 50 H 1.09002 * 109.47202 * 180.15857 * 26 24 23 51 51 H 1.09000 * 109.46824 * 300.00136 * 28 27 4 52 52 H 1.09003 * 109.47039 * 59.99895 * 28 27 4 53 53 H 1.08996 * 109.47436 * 179.97438 * 29 28 27 54 54 H 1.09000 * 109.47333 * 300.00042 * 29 28 27 55 55 H 1.09003 * 109.46846 * 59.99994 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 1 1.3584 -2.1316 -0.0905 6 6 2.8463 -1.4427 1.3067 7 6 3.5007 -2.7992 1.3600 8 8 3.3548 -3.5793 0.4430 9 7 4.2480 -3.1454 2.4269 10 6 4.8837 -4.4643 2.4790 11 1 5.1916 -4.7588 1.4757 12 6 3.8883 -5.4888 3.0281 13 6 4.5450 -6.8725 3.0491 14 7 5.8024 -6.7879 3.8044 15 6 6.0464 -7.6372 4.8505 16 1 6.7284 -7.3453 5.6354 17 6 5.4173 -8.8736 4.9020 18 7 5.2807 -9.4949 6.0543 19 14 4.7644 -9.6553 3.3362 20 1 3.3225 -9.3334 3.1861 21 1 5.5140 -9.1256 2.1687 22 1 4.9377 -11.1284 3.4088 23 6 6.7904 -5.7706 3.4200 24 6 6.1108 -4.4028 3.3914 25 6 7.0906 -3.3549 2.8597 26 6 5.6751 -4.0233 4.8081 27 8 2.9708 -1.3309 -1.1042 28 6 2.4138 -1.8756 -2.3022 29 6 3.4677 -1.8531 -3.4110 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9354 0.0004 32 1 3.1352 1.1058 -0.0005 33 1 1.8003 1.8766 -0.8899 34 1 1.8004 1.8765 0.8901 35 1 2.1656 -1.3342 2.1510 36 1 3.6116 -0.6680 1.3551 37 1 4.3644 -2.5216 3.1605 38 1 3.0044 -5.5151 2.3908 39 1 3.5983 -5.2084 4.0408 40 1 4.7528 -7.1938 2.0284 41 1 3.8771 -7.5869 3.5302 42 1 4.8407 -10.3586 6.0903 43 1 7.6034 -5.7581 4.1459 44 1 7.1850 -6.0002 2.4302 45 1 6.6040 -2.3798 2.8396 46 1 7.9644 -3.3115 3.5099 47 1 7.4014 -3.6269 1.8510 48 1 4.9783 -4.7711 5.1866 49 1 6.5494 -3.9796 5.4577 50 1 5.1874 -3.0487 4.7894 51 1 2.0979 -2.9031 -2.1214 52 1 1.5536 -1.2793 -2.6068 53 1 3.0429 -2.2690 -4.3246 54 1 3.7832 -0.8255 -3.5916 55 1 4.3281 -2.4491 -3.1066 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717309979.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:11 Heat of formation + Delta-G solvation = -71.293887 kcal Electronic energy + Delta-G solvation = -31581.706647 eV Core-core repulsion = 27618.797427 eV Total energy + Delta-G solvation = -3962.909221 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.47392 -40.15952 -38.95808 -36.44355 -36.08348 -34.49070 -33.67294 -32.75996 -31.94183 -30.73797 -28.22154 -28.15998 -27.90434 -26.86748 -24.94205 -23.66752 -23.52802 -22.94355 -21.25133 -19.79254 -19.67394 -18.83682 -17.91524 -17.82201 -17.48204 -16.72459 -16.60893 -16.14350 -15.99770 -15.62208 -15.54524 -15.22508 -15.10199 -14.96095 -14.64118 -14.38294 -14.29527 -13.99797 -13.99009 -13.83859 -13.47058 -13.34506 -13.15334 -13.01332 -12.82457 -12.67210 -12.65896 -12.60593 -12.47819 -12.45270 -12.19003 -12.01371 -11.96353 -11.85359 -11.78055 -11.55579 -11.39248 -11.22380 -10.86045 -10.67848 -10.45200 -10.06992 -9.93122 -8.97642 -8.17134 -5.44450 1.19449 1.26516 1.37982 1.45964 1.76350 2.24886 2.39561 2.80473 3.02070 3.32615 3.62082 3.68896 3.86282 3.93657 3.93957 4.01906 4.14810 4.22504 4.23417 4.32850 4.34790 4.44339 4.48515 4.49506 4.50601 4.59764 4.73860 4.73924 4.77064 4.83698 4.86697 4.87453 4.90153 4.92105 4.94863 5.00898 5.02285 5.07974 5.10323 5.17499 5.19282 5.23127 5.24006 5.28929 5.41777 5.59144 5.64480 5.67350 5.82622 5.85335 6.12482 6.34415 6.67165 6.89212 7.38279 7.61750 8.02777 9.02342 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.002886 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.385399 B = 9700.818970 C =10155.224907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.154 4.154 3 C -0.110 4.110 4 C 0.139 3.861 5 H 0.053 0.947 6 C -0.129 4.129 7 C 0.510 3.490 8 O -0.577 6.577 9 N -0.710 5.710 10 C 0.176 3.824 11 H 0.059 0.941 12 C -0.132 4.132 13 C 0.127 3.873 14 N -0.612 5.612 15 C -0.235 4.235 16 H 0.064 0.936 17 C -0.031 4.031 18 N -0.952 5.952 19 Si 0.932 3.068 20 H -0.284 1.284 21 H -0.267 1.267 22 H -0.311 1.311 23 C 0.155 3.845 24 C -0.079 4.079 25 C -0.128 4.128 26 C -0.127 4.127 27 O -0.383 6.383 28 C 0.062 3.938 29 C -0.145 4.145 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.412 0.588 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.020 0.980 41 H 0.049 0.951 42 H 0.260 0.740 43 H 0.066 0.934 44 H 0.025 0.975 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.047 0.953 48 H 0.041 0.959 49 H 0.054 0.946 50 H 0.072 0.928 51 H 0.032 0.968 52 H 0.054 0.946 53 H 0.085 0.915 54 H 0.067 0.933 55 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.553 26.162 -12.662 29.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.154 4.154 3 C -0.167 4.167 4 C 0.081 3.919 5 H 0.071 0.929 6 C -0.168 4.168 7 C 0.298 3.702 8 O -0.456 6.456 9 N -0.363 5.363 10 C 0.070 3.930 11 H 0.078 0.922 12 C -0.172 4.172 13 C 0.002 3.998 14 N -0.336 5.336 15 C -0.364 4.364 16 H 0.081 0.919 17 C -0.226 4.226 18 N -0.599 5.599 19 Si 0.763 3.237 20 H -0.212 1.212 21 H -0.192 1.192 22 H -0.240 1.240 23 C 0.030 3.970 24 C -0.082 4.082 25 C -0.186 4.186 26 C -0.184 4.184 27 O -0.302 6.302 28 C -0.014 4.014 29 C -0.202 4.202 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.250 0.750 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.038 0.962 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.043 0.957 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.066 0.934 48 H 0.060 0.940 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.050 0.950 52 H 0.072 0.928 53 H 0.103 0.897 54 H 0.086 0.914 55 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.476 25.554 -13.231 29.496 hybrid contribution -0.618 -1.421 -0.182 1.560 sum -7.093 24.133 -13.412 28.506 Atomic orbital electron populations 1.23917 0.94971 1.02838 0.99973 1.22248 0.95669 0.96203 1.01309 1.20728 1.00109 0.93328 1.02526 1.20800 0.90650 0.94170 0.86325 0.92868 1.21845 1.02059 0.94145 0.98773 1.21109 0.78288 0.89578 0.81208 1.90688 1.62130 1.54451 1.38377 1.46033 1.51225 1.17054 1.21938 1.20538 0.91794 0.82309 0.98315 0.92247 1.22277 0.98147 0.95448 1.01356 1.21226 0.87945 0.96512 0.94160 1.44435 1.15003 1.37937 1.36186 1.18877 1.24663 0.95012 0.97866 0.91877 1.25697 1.00855 0.97634 0.98403 1.69956 1.47521 1.17338 1.25060 0.86131 0.78053 0.76566 0.82979 1.21170 1.19205 1.23959 1.21079 0.91107 0.86866 0.97941 1.21114 0.94660 0.96496 0.95886 1.21733 0.98555 0.97783 1.00546 1.21737 1.01436 1.00702 0.94529 1.87859 1.39249 1.83298 1.19814 1.22442 0.96952 0.96644 0.85386 1.21702 0.98642 1.02799 0.97020 0.88677 0.86417 0.92010 0.91490 0.90158 0.85166 0.86010 0.75007 0.92738 0.91010 0.96180 0.93288 0.93079 0.91563 0.95717 0.90802 0.91356 0.93368 0.93975 0.92650 0.90882 0.94971 0.92770 0.89664 0.91384 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 13.95 67.78 0.95 -1.37 16 2 C -0.15 -2.27 5.05 -16.49 -0.08 -2.35 16 3 C -0.11 -1.28 9.69 71.23 0.69 -0.59 16 4 C 0.14 2.74 1.78 29.85 0.05 2.79 16 5 H 0.05 1.23 7.25 -2.39 -0.02 1.21 16 6 C -0.13 -2.16 5.24 29.85 0.16 -2.01 16 7 C 0.51 12.93 7.67 87.66 0.67 13.61 16 8 O -0.58 -20.07 15.08 10.75 0.16 -19.91 16 9 N -0.71 -16.41 4.29 -442.41 -1.90 -18.31 16 10 C 0.18 5.40 1.57 45.02 0.07 5.47 16 11 H 0.06 2.14 7.58 -2.39 -0.02 2.12 16 12 C -0.13 -4.82 5.31 30.67 0.16 -4.66 16 13 C 0.13 5.72 4.21 86.36 0.36 6.08 16 14 N -0.61 -28.57 2.24 -699.95 -1.57 -30.14 16 15 C -0.23 -13.09 10.05 84.03 0.84 -12.25 16 16 H 0.06 3.77 8.04 -2.91 -0.02 3.75 16 17 C -0.03 -1.83 5.22 84.86 0.44 -1.39 16 18 N -0.95 -59.88 13.97 21.65 0.30 -59.58 16 19 Si 0.93 48.24 24.36 68.60 1.67 49.91 16 20 H -0.28 -14.26 6.68 99.48 0.67 -13.60 16 21 H -0.27 -13.53 6.53 99.48 0.65 -12.88 16 22 H -0.31 -16.26 7.11 99.48 0.71 -15.55 16 23 C 0.16 5.83 5.15 86.22 0.44 6.28 16 24 C -0.08 -2.28 0.56 -52.25 -0.03 -2.31 16 25 C -0.13 -2.82 8.31 71.98 0.60 -2.22 16 26 C -0.13 -3.47 7.82 71.98 0.56 -2.91 16 27 O -0.38 -9.07 9.01 -135.20 -1.22 -10.28 16 28 C 0.06 1.34 6.46 71.98 0.46 1.81 16 29 C -0.14 -2.67 10.28 71.98 0.74 -1.93 16 30 H 0.09 1.27 7.84 -2.91 -0.02 1.25 16 31 H 0.12 1.12 8.05 -2.91 -0.02 1.10 16 32 H 0.06 0.80 7.50 -2.39 -0.02 0.78 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.12 1.58 7.66 -2.39 -0.02 1.56 16 37 H 0.41 6.84 6.66 -92.71 -0.62 6.22 16 38 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.07 2.59 6.34 -2.39 -0.02 2.58 16 40 H 0.02 0.93 7.08 -2.39 -0.02 0.91 16 41 H 0.05 2.43 4.37 -2.39 -0.01 2.42 16 42 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.07 2.48 7.92 -2.39 -0.02 2.46 16 44 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 1.30 7.36 -2.39 -0.02 1.28 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.04 1.46 5.97 -2.39 -0.01 1.45 16 49 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.07 1.44 6.58 -2.39 -0.02 1.43 16 51 H 0.03 0.81 8.08 -2.39 -0.02 0.79 16 52 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 53 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 54 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 55 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -72.80 417.91 4.68 -68.12 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.13 Total: 18.15 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 7.10 Total: 2.05 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -3.16 Total: -108.03 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.06 Total: -30.19 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 1.67 Total: 49.91 kcal Total: -72.80 4.68 -68.12 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717309979.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.176 kcal (2) G-P(sol) polarization free energy of solvation -72.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds