Wall clock time and date at job start Tue Mar 31 2020 22:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00076 * 2 1 4 4 C 1.52998 * 109.47080 * 150.00026 * 3 2 1 5 5 C 1.53003 * 109.46897 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47224 * 299.99940 * 5 4 3 7 7 C 1.53003 * 109.47224 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.46941 * 174.32562 * 7 6 5 9 9 O 1.21281 * 120.00294 * 355.18705 * 8 7 6 10 10 N 1.34784 * 119.99675 * 174.91586 * 8 7 6 11 11 C 1.47421 * 125.64874 * 354.95330 * 10 8 7 12 12 C 1.55126 * 104.72088 * 155.81798 * 11 10 8 13 13 C 1.55156 * 101.48692 * 37.29461 * 12 11 10 14 14 C 1.47023 * 125.64433 * 175.26184 * 10 8 7 15 15 H 1.08997 * 109.88397 * 300.43775 * 14 10 8 16 16 C 1.52997 * 109.88510 * 61.60833 * 14 10 8 17 17 N 1.46496 * 109.47296 * 186.28520 * 16 14 10 18 18 C 1.46495 * 120.00469 * 84.80519 * 17 16 14 19 19 C 1.36942 * 119.99811 * 264.81087 * 17 16 14 20 20 H 1.08005 * 119.99659 * 3.41791 * 19 17 16 21 21 C 1.38806 * 120.00286 * 183.42333 * 19 17 16 22 22 N 1.31621 * 119.99927 * 9.63024 * 21 19 17 23 23 Si 1.86800 * 120.00045 * 189.62929 * 21 19 17 24 24 H 1.48496 * 109.47288 * 60.00000 * 23 21 19 25 25 H 1.48504 * 109.47136 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47310 * 299.99680 * 23 21 19 27 27 C 1.53004 * 109.47329 * 59.99958 * 6 5 4 28 28 C 1.53000 * 109.46577 * 269.99481 * 3 2 1 29 29 H 1.09004 * 109.47104 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47291 * 300.00083 * 1 2 3 31 31 H 1.08997 * 109.47210 * 60.00850 * 1 2 3 32 32 H 1.08993 * 109.47195 * 29.99778 * 3 2 1 33 33 H 1.09001 * 109.47598 * 59.99766 * 4 3 2 34 34 H 1.09002 * 109.47216 * 299.99213 * 4 3 2 35 35 H 1.08997 * 109.47172 * 179.97438 * 5 4 3 36 36 H 1.09007 * 109.47089 * 60.00102 * 5 4 3 37 37 H 1.09001 * 109.46942 * 299.99725 * 6 5 4 38 38 H 1.08999 * 109.47171 * 54.32030 * 7 6 5 39 39 H 1.09000 * 109.46579 * 294.32476 * 7 6 5 40 40 H 1.08999 * 110.36613 * 274.74740 * 11 10 8 41 41 H 1.08992 * 110.36721 * 37.06913 * 11 10 8 42 42 H 1.09001 * 111.19404 * 279.18584 * 12 11 10 43 43 H 1.09001 * 110.90680 * 155.27604 * 12 11 10 44 44 H 1.09001 * 110.71832 * 205.96526 * 13 12 11 45 45 H 1.09000 * 110.87053 * 82.77080 * 13 12 11 46 46 H 1.09006 * 109.46613 * 306.28126 * 16 14 10 47 47 H 1.09000 * 109.47373 * 66.27775 * 16 14 10 48 48 H 1.08997 * 109.47113 * 354.02236 * 18 17 16 49 49 H 1.09006 * 109.46813 * 114.02012 * 18 17 16 50 50 H 1.08995 * 109.47514 * 234.01777 * 18 17 16 51 51 H 0.97003 * 119.99830 * 180.02562 * 22 21 19 52 52 H 1.08993 * 109.47010 * 59.99929 * 27 6 5 53 53 H 1.08995 * 109.47211 * 180.02562 * 27 6 5 54 54 H 1.08993 * 109.47601 * 300.00048 * 28 3 2 55 55 H 1.09004 * 109.47069 * 60.00329 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2632 0.7212 5 6 3.9815 2.6609 0.7207 6 6 4.1890 3.1262 -0.7220 7 6 4.8110 4.5241 -0.7226 8 6 5.1437 4.9252 -2.1365 9 8 4.9881 4.1352 -3.0435 10 7 5.6090 6.1637 -2.3938 11 6 5.7405 7.2537 -1.4100 12 6 6.8402 8.1799 -1.9926 13 6 6.5289 8.1120 -3.5111 14 6 6.0635 6.6532 -3.7036 15 1 6.8937 6.0432 -4.0596 16 6 4.9095 6.6033 -4.7068 17 7 5.4068 6.9491 -6.0408 18 6 6.0082 5.9169 -6.8886 19 6 5.3094 8.2372 -6.4951 20 1 4.9169 9.0092 -5.8498 21 6 5.7151 8.5508 -7.7850 22 7 6.0134 7.5894 -8.6331 23 14 5.8378 10.3371 -8.3173 24 1 6.8146 11.0456 -7.4518 25 1 6.2903 10.4027 -9.7302 26 1 4.5065 10.9832 -8.1930 27 6 2.8403 3.1683 -1.4433 28 6 2.2177 1.7712 -1.4426 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.3450 1.9994 0.5138 33 1 4.0242 0.5693 0.2075 34 1 3.2111 0.9314 1.7490 35 1 4.9420 2.6309 1.2349 36 1 3.3163 3.3552 1.2343 37 1 4.8541 2.4319 -1.2355 38 1 5.7213 4.5169 -0.1231 39 1 4.1030 5.2368 -0.2997 40 1 4.7985 7.7935 -1.3137 41 1 6.0519 6.8571 -0.4438 42 1 7.8361 7.7912 -1.7801 43 1 6.7312 9.1972 -1.6166 44 1 7.4256 8.3114 -4.0978 45 1 5.7336 8.8087 -3.7760 46 1 4.4876 5.5984 -4.7256 47 1 4.1392 7.3153 -4.4104 48 1 6.0953 4.9884 -6.3243 49 1 5.3787 5.7528 -7.7632 50 1 6.9981 6.2413 -7.2092 51 1 6.2973 7.8086 -9.5344 52 1 2.1752 3.8625 -0.9298 53 1 2.9882 3.4994 -2.4712 54 1 2.8829 1.0773 -1.9563 55 1 1.2569 1.8013 -1.9564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717375894.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:52 Heat of formation + Delta-G solvation = -89.730550 kcal Electronic energy + Delta-G solvation = -31014.183136 eV Core-core repulsion = 27050.474441 eV Total energy + Delta-G solvation = -3963.708694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.35414 -40.16327 -38.76899 -37.40192 -37.12474 -33.66865 -33.01340 -32.20710 -31.71156 -30.56298 -28.31197 -28.01293 -26.82742 -26.67516 -24.18666 -23.63172 -22.87706 -22.45764 -21.44869 -20.72048 -19.67738 -18.88967 -17.94901 -17.56787 -17.41283 -16.72314 -16.60133 -16.22047 -16.03577 -15.73116 -15.41734 -15.16085 -14.96004 -14.84509 -14.58561 -14.39610 -14.19306 -13.92264 -13.75739 -13.60081 -13.42906 -13.21950 -12.96704 -12.89205 -12.75569 -12.71157 -12.60636 -12.42410 -12.29075 -12.10218 -12.04109 -12.00571 -11.87908 -11.74847 -11.57611 -11.52930 -11.47763 -11.41301 -11.17322 -10.65989 -10.62400 -10.31520 -9.65295 -8.88882 -7.73214 -5.18603 1.46710 1.50191 1.56590 1.76953 2.09480 2.53700 2.83339 3.35119 3.53959 3.68892 3.74453 3.80591 3.84996 3.85456 4.03073 4.08909 4.16311 4.29322 4.34872 4.40378 4.46691 4.49677 4.51127 4.52914 4.54030 4.56174 4.60643 4.69281 4.74624 4.75141 4.81614 4.85110 4.91639 4.96910 5.01455 5.05775 5.11321 5.14987 5.15158 5.17755 5.22137 5.24762 5.30213 5.42905 5.43470 5.50473 5.52874 5.57830 5.63143 5.75770 6.27641 6.31175 6.74014 7.14963 7.33654 7.86635 8.30311 9.26584 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016764 B = 0.002487 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.823346 B =11256.275459 C =12361.772395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.091 3.909 4 C -0.114 4.114 5 C -0.100 4.100 6 C -0.072 4.072 7 C -0.119 4.119 8 C 0.512 3.488 9 O -0.584 6.584 10 N -0.617 5.617 11 C 0.098 3.902 12 C -0.123 4.123 13 C -0.108 4.108 14 C 0.125 3.875 15 H 0.033 0.967 16 C 0.156 3.844 17 N -0.621 5.621 18 C 0.192 3.808 19 C -0.242 4.242 20 H 0.085 0.915 21 C -0.070 4.070 22 N -0.953 5.953 23 Si 0.975 3.025 24 H -0.273 1.273 25 H -0.300 1.300 26 H -0.276 1.276 27 C -0.112 4.112 28 C -0.135 4.135 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.028 0.972 47 H 0.046 0.954 48 H 0.002 0.998 49 H 0.016 0.984 50 H 0.014 0.986 51 H 0.243 0.757 52 H 0.074 0.926 53 H 0.044 0.956 54 H 0.046 0.954 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.444 -5.736 27.909 29.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.033 3.967 4 C -0.152 4.152 5 C -0.137 4.137 6 C -0.091 4.091 7 C -0.158 4.158 8 C 0.302 3.698 9 O -0.464 6.464 10 N -0.352 5.352 11 C -0.023 4.023 12 C -0.161 4.161 13 C -0.146 4.146 14 C 0.019 3.981 15 H 0.051 0.949 16 C 0.028 3.972 17 N -0.345 5.345 18 C 0.047 3.953 19 C -0.371 4.371 20 H 0.103 0.897 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.804 3.196 24 H -0.199 1.199 25 H -0.226 1.226 26 H -0.202 1.202 27 C -0.149 4.149 28 C -0.173 4.173 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.100 0.900 41 H 0.129 0.871 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.046 0.954 47 H 0.064 0.936 48 H 0.021 0.979 49 H 0.035 0.965 50 H 0.033 0.967 51 H 0.053 0.947 52 H 0.093 0.907 53 H 0.063 0.937 54 H 0.065 0.935 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.410 -6.381 27.296 28.549 hybrid contribution -0.001 0.653 -1.799 1.914 sum -5.411 -5.727 25.497 26.686 Atomic orbital electron populations 1.22937 0.80029 1.03585 1.00591 1.87874 1.21061 1.29023 1.95155 1.22252 0.95702 0.84011 0.94705 1.21582 0.94550 0.98204 1.00837 1.21517 1.02341 0.95399 0.94465 1.20922 0.96021 0.95137 0.96994 1.21765 1.04360 0.98595 0.91094 1.21316 0.75848 0.79754 0.92835 1.90696 1.54307 1.52174 1.49201 1.48871 1.63642 1.12104 1.10536 1.22648 0.99690 0.87387 0.92598 1.22865 0.98904 1.01356 0.92997 1.22413 1.01115 0.93535 0.97577 1.22094 0.96508 0.95603 0.83916 0.94924 1.21029 0.94182 0.97581 0.84365 1.44178 1.70337 1.06852 1.13107 1.20574 0.96287 0.87012 0.91387 1.19613 1.35502 0.85549 0.96465 0.89719 1.25719 1.02418 1.01604 0.96462 1.70428 1.53266 1.31344 1.05178 0.85200 0.78179 0.79775 0.76490 1.19858 1.22636 1.20204 1.21539 0.96508 0.96153 1.00714 1.21946 1.00426 0.97206 0.97770 0.88763 0.92601 0.94186 0.90625 0.92696 0.89945 0.89391 0.89538 0.92937 0.86089 0.86364 0.90048 0.87088 0.90324 0.87472 0.92344 0.91409 0.95384 0.93603 0.97896 0.96543 0.96707 0.94708 0.90706 0.93684 0.93509 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.58 16 2 O -0.41 -8.55 10.35 -148.98 -1.54 -10.09 16 3 C 0.09 1.63 2.61 30.59 0.08 1.71 16 4 C -0.11 -1.76 5.57 30.59 0.17 -1.59 16 5 C -0.10 -1.21 5.20 30.59 0.16 -1.05 16 6 C -0.07 -1.38 1.83 -10.79 -0.02 -1.40 16 7 C -0.12 -2.01 4.06 29.85 0.12 -1.89 16 8 C 0.51 14.99 7.30 87.65 0.64 15.63 16 9 O -0.58 -23.40 12.97 -3.03 -0.04 -23.44 16 10 N -0.62 -17.50 3.06 -787.65 -2.41 -19.92 16 11 C 0.10 1.72 6.71 86.93 0.58 2.30 16 12 C -0.12 -2.41 7.10 32.06 0.23 -2.18 16 13 C -0.11 -3.43 5.78 31.78 0.18 -3.25 16 14 C 0.13 4.67 3.14 45.34 0.14 4.82 16 15 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 16 C 0.16 7.08 5.07 86.38 0.44 7.52 16 17 N -0.62 -33.51 2.84 -726.96 -2.07 -35.58 16 18 C 0.19 10.91 8.99 127.77 1.15 12.06 16 19 C -0.24 -13.42 9.02 84.03 0.76 -12.66 16 20 H 0.09 4.39 7.28 -2.91 -0.02 4.37 16 21 C -0.07 -4.00 5.38 84.86 0.46 -3.54 16 22 N -0.95 -58.76 9.61 21.65 0.21 -58.55 16 23 Si 0.98 45.67 29.56 68.60 2.03 47.70 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 C -0.11 -2.53 4.95 30.58 0.15 -2.38 16 28 C -0.14 -3.06 5.53 30.58 0.17 -2.89 16 29 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.06 0.61 8.09 -2.39 -0.02 0.59 16 31 H 0.04 0.57 7.87 -2.39 -0.02 0.56 16 32 H 0.08 1.10 7.79 -2.39 -0.02 1.08 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.05 1.33 7.86 -2.39 -0.02 1.31 16 38 H 0.12 1.39 8.13 -2.39 -0.02 1.37 16 39 H 0.12 1.36 8.09 -2.39 -0.02 1.34 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.11 1.11 7.61 -2.39 -0.02 1.10 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.07 2.29 7.01 -2.39 -0.02 2.27 16 46 H 0.03 1.39 6.46 -2.38 -0.02 1.38 16 47 H 0.05 2.02 7.83 -2.39 -0.02 2.00 16 48 H 0.00 0.13 7.91 -2.39 -0.02 0.12 16 49 H 0.02 1.00 6.96 -2.38 -0.02 0.99 16 50 H 0.01 0.87 7.18 -2.39 -0.02 0.85 16 51 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 52 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 53 H 0.04 1.40 6.19 -2.39 -0.01 1.39 16 54 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 55 H 0.06 1.27 7.87 -2.38 -0.02 1.25 16 Total: -1.00 -76.78 414.92 3.64 -73.14 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.83 Total: 13.94 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 6.63 Total: 12.79 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -4.27 Total: -114.04 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.58 Total: -33.53 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -76.78 3.64 -73.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717375894.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.590 kcal (2) G-P(sol) polarization free energy of solvation -76.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds