Wall clock time and date at job start Tue Mar 31 2020 22:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00397 * 2 1 4 4 C 1.52993 * 109.47274 * 210.00017 * 3 2 1 5 5 C 1.52997 * 109.47111 * 299.99993 * 4 3 2 6 6 C 1.53002 * 109.46899 * 299.99552 * 5 4 3 7 7 C 1.53000 * 109.47257 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47309 * 173.51586 * 7 6 5 9 9 O 1.21279 * 119.99890 * 354.48321 * 8 7 6 10 10 N 1.34782 * 119.99898 * 174.48508 * 8 7 6 11 11 C 1.47420 * 125.65070 * 5.05771 * 10 8 7 12 12 C 1.54909 * 104.92979 * 204.15891 * 11 10 8 13 13 C 1.55157 * 101.57707 * 322.93223 * 12 11 10 14 14 C 1.47291 * 125.78911 * 185.05944 * 10 8 7 15 15 H 1.09001 * 109.85664 * 59.50415 * 14 10 8 16 16 C 1.52997 * 109.87416 * 298.35862 * 14 10 8 17 17 N 1.46494 * 109.47206 * 176.41664 * 16 14 10 18 18 C 1.46504 * 120.00245 * 95.16653 * 17 16 14 19 19 C 1.36938 * 119.99944 * 275.16718 * 17 16 14 20 20 H 1.08001 * 119.99962 * 18.64880 * 19 17 16 21 21 C 1.38810 * 120.00183 * 198.63845 * 19 17 16 22 22 N 1.31624 * 120.00189 * 12.62145 * 21 19 17 23 23 Si 1.86797 * 120.00168 * 192.61362 * 21 19 17 24 24 H 1.48502 * 109.47115 * 94.98622 * 23 21 19 25 25 H 1.48499 * 109.47228 * 214.98465 * 23 21 19 26 26 H 1.48497 * 109.47137 * 334.98627 * 23 21 19 27 27 C 1.53002 * 109.46787 * 60.00441 * 6 5 4 28 28 C 1.52993 * 109.47199 * 89.99729 * 3 2 1 29 29 H 1.08999 * 109.47201 * 300.00188 * 1 2 3 30 30 H 1.09001 * 109.47285 * 60.00376 * 1 2 3 31 31 H 1.09001 * 109.47453 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46804 * 329.99788 * 3 2 1 33 33 H 1.08995 * 109.47297 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.47260 * 59.99764 * 4 3 2 35 35 H 1.09001 * 109.47449 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.47799 * 59.99720 * 5 4 3 37 37 H 1.08999 * 109.47651 * 300.00207 * 6 5 4 38 38 H 1.09000 * 109.47171 * 53.51389 * 7 6 5 39 39 H 1.09007 * 109.47398 * 293.51883 * 7 6 5 40 40 H 1.09000 * 110.36847 * 85.26079 * 11 10 8 41 41 H 1.09002 * 110.36874 * 323.04880 * 11 10 8 42 42 H 1.08996 * 111.00812 * 81.00761 * 12 11 10 43 43 H 1.09003 * 111.00400 * 204.86397 * 12 11 10 44 44 H 1.09006 * 110.71787 * 153.86783 * 13 12 11 45 45 H 1.09001 * 110.72633 * 277.13858 * 13 12 11 46 46 H 1.09001 * 109.46599 * 296.41353 * 16 14 10 47 47 H 1.08993 * 109.47463 * 56.41500 * 16 14 10 48 48 H 1.08995 * 109.46963 * 94.40167 * 18 17 16 49 49 H 1.09004 * 109.47039 * 214.39851 * 18 17 16 50 50 H 1.09000 * 109.46966 * 334.40114 * 18 17 16 51 51 H 0.96991 * 120.00465 * 179.97438 * 22 21 19 52 52 H 1.08995 * 109.47455 * 59.99933 * 27 6 5 53 53 H 1.09002 * 109.47173 * 179.97438 * 27 6 5 54 54 H 1.08999 * 109.47321 * 180.02562 * 28 3 2 55 55 H 1.09003 * 109.47434 * 300.00028 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2631 -0.7212 5 6 4.2927 0.2891 0.0000 6 6 4.5002 0.7551 1.4425 7 6 5.4344 -0.2186 2.1636 8 6 5.7660 0.3225 3.5305 9 8 5.3836 1.4268 3.8546 10 7 6.4876 -0.4209 4.3927 11 6 7.1022 -1.7273 4.0951 12 6 7.2486 -2.4224 5.4717 13 6 7.6180 -1.2254 6.3872 14 6 6.7944 -0.0655 5.7887 15 1 5.8690 0.0606 6.3507 16 6 7.6113 1.2276 5.8288 17 7 7.8384 1.6187 7.2222 18 6 9.0783 1.2308 7.8992 19 6 6.8916 2.3469 7.8919 20 1 5.8763 2.3797 7.5252 21 6 7.2367 3.0429 9.0423 22 7 8.5043 3.2116 9.3541 23 14 5.9023 3.7402 10.1478 24 1 5.6134 2.7787 11.2420 25 1 6.3629 5.0270 10.7285 26 1 4.6697 3.9693 9.3519 27 6 3.1515 0.7973 2.1637 28 6 2.2177 1.7713 1.4424 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.3451 1.9993 -0.5139 33 1 3.8021 2.2589 -0.7216 34 1 3.2112 0.9312 -1.7489 35 1 5.2537 0.2593 -0.5135 36 1 3.8494 -0.7067 0.0001 37 1 4.9436 1.7508 1.4425 38 1 6.3519 -0.3362 1.5870 39 1 4.9427 -1.1861 2.2653 40 1 8.0800 -1.5902 3.6334 41 1 6.4539 -2.3117 3.4422 42 1 6.3076 -2.8761 5.7824 43 1 8.0496 -3.1615 5.4530 44 1 7.3178 -1.4203 7.4168 45 1 8.6850 -1.0105 6.3296 46 1 8.5700 1.0670 5.3356 47 1 7.0656 2.0181 5.3139 48 1 9.8053 2.0387 7.8167 49 1 8.8717 1.0340 8.9512 50 1 9.4805 0.3312 7.4334 51 1 8.7455 3.6982 10.1577 52 1 2.7081 -0.1984 2.1638 53 1 3.2993 1.1289 3.1915 54 1 2.6607 2.7672 1.4425 55 1 1.2569 1.8015 1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717375895.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:57 Heat of formation + Delta-G solvation = -92.544691 kcal Electronic energy + Delta-G solvation = -31228.587632 eV Core-core repulsion = 27264.756907 eV Total energy + Delta-G solvation = -3963.830725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.34872 -40.24344 -38.74943 -37.16894 -36.99107 -33.71820 -33.01830 -32.24130 -31.66459 -30.60292 -28.12727 -28.00804 -27.11587 -26.77982 -24.22858 -23.59742 -22.82993 -22.47096 -21.53800 -20.53098 -19.71037 -18.71985 -17.97750 -17.38368 -17.20196 -16.85595 -16.68935 -16.25056 -16.17950 -15.66666 -15.45827 -15.18064 -15.04022 -14.82981 -14.63219 -14.30355 -14.20055 -13.89345 -13.75924 -13.55881 -13.28005 -13.17153 -13.04440 -12.91052 -12.88575 -12.80752 -12.57183 -12.37499 -12.31810 -12.15574 -12.10142 -12.00842 -11.97520 -11.90938 -11.61647 -11.47922 -11.42763 -11.27196 -10.96414 -10.66964 -10.60289 -10.28666 -9.63699 -8.78339 -7.86094 -5.31326 1.40184 1.41054 1.51476 1.77269 2.08712 2.48633 2.92466 3.25523 3.55410 3.68440 3.76136 3.78548 3.82040 3.90154 4.02935 4.06623 4.21667 4.23147 4.36109 4.42941 4.43722 4.48910 4.50921 4.53300 4.59792 4.60725 4.65811 4.72064 4.76214 4.81873 4.84468 4.86882 4.92407 4.95370 5.02645 5.08041 5.08782 5.14833 5.16983 5.17939 5.20417 5.30051 5.33532 5.35718 5.44186 5.51003 5.55397 5.59357 5.64956 5.71908 6.28325 6.34295 6.73191 7.13265 7.34126 7.85040 8.25050 9.16802 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.002844 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.871935 B = 9842.137506 C =11195.579118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.091 3.909 4 C -0.115 4.115 5 C -0.100 4.100 6 C -0.068 4.068 7 C -0.118 4.118 8 C 0.511 3.489 9 O -0.583 6.583 10 N -0.619 5.619 11 C 0.096 3.904 12 C -0.122 4.122 13 C -0.112 4.112 14 C 0.126 3.874 15 H 0.031 0.969 16 C 0.153 3.847 17 N -0.614 5.614 18 C 0.182 3.818 19 C -0.256 4.256 20 H 0.053 0.947 21 C -0.053 4.053 22 N -0.939 5.939 23 Si 0.967 3.033 24 H -0.280 1.280 25 H -0.289 1.289 26 H -0.279 1.279 27 C -0.105 4.105 28 C -0.139 4.139 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.046 0.954 47 H 0.021 0.979 48 H -0.005 1.005 49 H 0.024 0.976 50 H 0.038 0.962 51 H 0.249 0.751 52 H 0.062 0.938 53 H 0.035 0.965 54 H 0.063 0.937 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.085 -14.954 -22.795 28.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C 0.033 3.967 4 C -0.153 4.153 5 C -0.138 4.138 6 C -0.087 4.087 7 C -0.157 4.157 8 C 0.302 3.698 9 O -0.463 6.463 10 N -0.353 5.353 11 C -0.025 4.025 12 C -0.159 4.159 13 C -0.151 4.151 14 C 0.020 3.980 15 H 0.049 0.951 16 C 0.026 3.974 17 N -0.338 5.338 18 C 0.038 3.962 19 C -0.386 4.386 20 H 0.071 0.929 21 C -0.247 4.247 22 N -0.586 5.586 23 Si 0.795 3.205 24 H -0.206 1.206 25 H -0.215 1.215 26 H -0.204 1.204 27 C -0.142 4.142 28 C -0.177 4.177 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.094 0.906 43 H 0.131 0.869 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.065 0.935 47 H 0.040 0.960 48 H 0.013 0.987 49 H 0.043 0.957 50 H 0.056 0.944 51 H 0.059 0.941 52 H 0.081 0.919 53 H 0.054 0.946 54 H 0.082 0.918 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.142 -14.415 -22.559 28.289 hybrid contribution -0.855 1.449 1.469 2.233 sum -9.997 -12.966 -21.090 26.699 Atomic orbital electron populations 1.22908 0.80566 1.03456 1.00231 1.87884 1.20332 1.28097 1.95040 1.22145 0.95550 0.84560 0.94406 1.21648 0.93451 1.00700 0.99458 1.21431 0.99846 0.99647 0.92852 1.20882 0.94289 0.98269 0.95294 1.21747 1.02490 1.00999 0.90508 1.21281 0.76639 0.84308 0.87571 1.90709 1.54674 1.22064 1.78813 1.48912 1.52264 1.22212 1.11927 1.22616 0.99214 0.82255 0.98454 1.22813 1.03403 0.96561 0.93143 1.22531 0.99599 0.93652 0.99279 1.22106 0.97247 0.96730 0.81924 0.95117 1.20989 0.96666 0.94714 0.85013 1.44055 1.19264 1.61823 1.08654 1.20618 0.86265 0.94286 0.95057 1.19371 0.90096 1.22657 1.06483 0.92882 1.25649 0.98127 0.99588 1.01349 1.70253 1.15940 1.45711 1.26710 0.85248 0.78694 0.77535 0.78996 1.20621 1.21533 1.20448 1.21398 0.95189 0.99473 0.98154 1.21983 0.99451 0.99271 0.96999 0.94518 0.93013 0.88743 0.91229 0.90464 0.89994 0.90339 0.90916 0.92712 0.86414 0.87086 0.89817 0.87687 0.90564 0.86946 0.91693 0.90657 0.93520 0.96033 0.98653 0.95693 0.94395 0.94132 0.91909 0.94616 0.91793 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.56 16 2 O -0.39 -7.31 9.00 -148.98 -1.34 -8.65 16 3 C 0.09 1.59 2.92 30.59 0.09 1.68 16 4 C -0.12 -1.77 5.66 30.59 0.17 -1.59 16 5 C -0.10 -1.61 5.06 30.59 0.15 -1.45 16 6 C -0.07 -1.53 1.83 -10.79 -0.02 -1.55 16 7 C -0.12 -2.44 4.19 29.85 0.13 -2.32 16 8 C 0.51 16.52 7.30 87.66 0.64 17.16 16 9 O -0.58 -25.34 13.11 -3.03 -0.04 -25.38 16 10 N -0.62 -18.69 3.07 -787.43 -2.42 -21.11 16 11 C 0.10 1.78 6.73 86.86 0.58 2.36 16 12 C -0.12 -2.30 7.09 31.99 0.23 -2.07 16 13 C -0.11 -3.35 5.70 31.78 0.18 -3.17 16 14 C 0.13 4.82 3.14 45.29 0.14 4.96 16 15 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 16 C 0.15 7.17 5.08 86.38 0.44 7.61 16 17 N -0.61 -33.40 2.79 -726.96 -2.03 -35.42 16 18 C 0.18 9.34 8.58 127.77 1.10 10.43 16 19 C -0.26 -15.49 9.70 84.03 0.82 -14.68 16 20 H 0.05 3.32 7.86 -2.91 -0.02 3.30 16 21 C -0.05 -3.16 5.12 84.86 0.43 -2.73 16 22 N -0.94 -58.10 10.44 21.65 0.23 -57.88 16 23 Si 0.97 48.52 29.57 68.60 2.03 50.54 16 24 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 25 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 26 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 27 C -0.10 -2.71 4.82 30.59 0.15 -2.56 16 28 C -0.14 -3.12 5.63 30.59 0.17 -2.94 16 29 H 0.04 0.51 7.87 -2.39 -0.02 0.49 16 30 H 0.05 0.55 8.09 -2.39 -0.02 0.53 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.03 7.79 -2.39 -0.02 1.01 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.17 7.68 -2.39 -0.02 1.16 16 37 H 0.05 1.50 7.82 -2.39 -0.02 1.48 16 38 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.11 1.81 7.71 -2.38 -0.02 1.79 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.29 7.31 -2.39 -0.02 1.27 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 45 H 0.07 2.24 6.16 -2.39 -0.01 2.23 16 46 H 0.05 2.02 7.95 -2.39 -0.02 2.00 16 47 H 0.02 1.15 6.55 -2.39 -0.02 1.14 16 48 H 0.00 -0.28 7.50 -2.39 -0.02 -0.29 16 49 H 0.02 1.36 6.97 -2.39 -0.02 1.35 16 50 H 0.04 1.59 6.12 -2.39 -0.01 1.58 16 51 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 52 H 0.06 1.56 7.68 -2.39 -0.02 1.54 16 53 H 0.04 1.21 6.29 -2.39 -0.01 1.19 16 54 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 55 H 0.06 1.26 7.87 -2.39 -0.02 1.24 16 Total: -1.00 -78.54 411.73 3.89 -74.65 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.83 Total: 12.54 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 6.63 Total: 10.71 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -4.22 Total: -114.41 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.38 Total: -34.03 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.54 kcal Total: -78.54 3.89 -74.65 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717375895.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.897 kcal (2) G-P(sol) polarization free energy of solvation -78.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds