Wall clock time and date at job start Tue Mar 31 2020 22:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.53000 * 109.46726 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47592 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99758 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00201 * 179.97438 * 7 6 5 10 10 C 1.46920 * 120.62933 * 0.02562 * 9 7 6 11 11 C 1.53196 * 108.77160 * 233.58343 * 10 9 7 12 12 C 1.53041 * 109.31301 * 305.36383 * 11 10 9 13 13 C 1.53036 * 109.53813 * 61.36937 * 12 11 10 14 14 H 1.08991 * 109.49999 * 58.61439 * 13 12 11 15 15 C 1.53003 * 109.50048 * 178.68518 * 13 12 11 16 16 H 1.08996 * 110.88509 * 56.11407 * 15 13 12 17 17 C 1.55154 * 111.00659 * 179.97438 * 15 13 12 18 18 C 1.54323 * 102.94214 * 153.57359 * 17 15 13 19 19 N 1.47021 * 107.26838 * 337.80657 * 18 17 15 20 20 C 1.36939 * 125.64227 * 178.92298 * 19 18 17 21 21 H 1.08004 * 119.99752 * 180.02562 * 20 19 18 22 22 C 1.38815 * 120.00568 * 0.02562 * 20 19 18 23 23 N 1.31619 * 119.99291 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00186 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47278 * 60.00081 * 24 22 20 26 26 H 1.48500 * 109.46979 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46913 * 299.99602 * 24 22 20 28 28 C 1.47415 * 108.70706 * 358.93882 * 19 18 17 29 29 C 1.46925 * 120.62841 * 179.72066 * 9 7 6 30 30 H 1.08996 * 109.46843 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46885 * 300.00332 * 1 2 3 32 32 H 1.08996 * 109.46933 * 60.00042 * 1 2 3 33 33 H 1.09001 * 109.46938 * 60.00058 * 3 2 1 34 34 H 1.08992 * 109.47388 * 300.00049 * 3 2 1 35 35 H 1.09002 * 109.47398 * 300.00244 * 4 3 2 36 36 H 1.09001 * 109.47194 * 60.00425 * 4 3 2 37 37 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 38 38 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 39 39 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 40 40 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 41 41 H 1.08995 * 109.59135 * 353.36692 * 10 9 7 42 42 H 1.09005 * 109.58916 * 113.65642 * 10 9 7 43 43 H 1.08996 * 109.50169 * 65.32119 * 11 10 9 44 44 H 1.09004 * 109.49780 * 185.38192 * 11 10 9 45 45 H 1.09003 * 109.46015 * 181.38639 * 12 11 10 46 46 H 1.09005 * 109.46117 * 301.35694 * 12 11 10 47 47 H 1.09003 * 110.71856 * 271.93511 * 17 15 13 48 48 H 1.09002 * 110.71964 * 35.02798 * 17 15 13 49 49 H 1.09001 * 109.87716 * 97.22347 * 18 17 15 50 50 H 1.09000 * 109.87985 * 218.23471 * 18 17 15 51 51 H 0.97004 * 119.99643 * 179.97438 * 23 22 20 52 52 H 1.08994 * 110.36970 * 265.29004 * 28 19 18 53 53 H 1.09004 * 110.36565 * 142.96820 * 28 19 18 54 54 H 1.09002 * 109.58655 * 246.20196 * 29 9 7 55 55 H 1.08997 * 109.58702 * 6.63068 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 6 5.6830 2.4616 0.0013 7 6 6.2960 3.8382 0.0013 8 8 5.5831 4.8195 0.0018 9 7 7.6364 3.9791 0.0018 10 6 8.5130 2.8000 0.0018 11 6 9.4977 2.9178 1.1694 12 6 10.2398 4.2528 1.0730 13 6 9.2364 5.4043 1.1694 14 1 8.6934 5.3357 2.1119 15 6 9.9826 6.7385 1.1058 16 1 10.5877 6.8026 0.2015 17 6 8.9961 7.9324 1.2002 18 6 9.8698 9.0563 1.7963 19 7 10.9963 8.4129 2.4881 20 6 12.0135 9.0642 3.1333 21 1 12.7985 8.4984 3.6130 22 6 12.0357 10.4517 3.1709 23 7 11.0788 11.1412 2.5868 24 14 13.4237 11.3401 4.0505 25 1 14.7198 10.9774 3.4228 26 1 13.2171 12.8069 3.9462 27 1 13.4380 10.9422 5.4812 28 6 10.8496 6.9507 2.3719 29 6 8.2487 5.3147 -0.0043 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8568 0.6438 0.8908 36 1 3.8575 0.6436 -0.8892 37 1 3.8366 3.1235 -0.8887 38 1 3.8359 3.1231 0.8912 39 1 6.0046 1.9202 0.8910 40 1 6.0047 1.9211 -0.8889 41 1 7.9124 1.8982 0.1200 42 1 9.0620 2.7528 -0.9387 43 1 8.9519 2.8723 2.1118 44 1 10.2150 2.0983 1.1246 45 1 10.9588 4.3284 1.8888 46 1 10.7653 4.3081 0.1195 47 1 8.6318 8.2107 0.2113 48 1 8.1644 7.6940 1.8631 49 1 10.2426 9.6985 0.9985 50 1 9.2850 9.6449 2.5032 51 1 11.0941 12.1107 2.6134 52 1 10.3437 6.5491 3.2498 53 1 11.8250 6.4803 2.2469 54 1 8.7785 5.4694 -0.9443 55 1 7.4736 6.0725 0.1097 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717378735.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:37 Heat of formation + Delta-G solvation = -103.034748 kcal Electronic energy + Delta-G solvation = -29766.992804 eV Core-core repulsion = 25802.707196 eV Total energy + Delta-G solvation = -3964.285608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.33016 -39.72800 -38.92401 -38.00031 -35.73006 -35.15326 -33.62087 -32.53000 -31.07869 -30.54677 -28.84510 -27.49453 -26.60081 -26.18924 -24.57780 -23.81628 -22.39918 -21.89071 -21.57605 -20.82939 -19.74214 -18.84027 -18.06646 -17.35059 -17.25950 -16.88843 -16.82639 -16.61105 -16.26211 -15.84316 -15.65592 -15.42885 -15.22390 -15.00595 -14.43666 -14.23910 -14.08335 -13.94239 -13.83269 -13.58782 -13.47687 -13.47108 -13.18243 -12.83924 -12.72894 -12.63357 -12.41467 -12.32827 -12.27313 -12.11408 -12.04515 -11.99428 -11.84752 -11.71433 -11.69411 -11.57915 -11.41357 -11.33337 -11.02671 -10.71103 -10.69286 -10.62232 -9.56403 -8.90508 -7.85121 -5.21337 1.44043 1.48265 1.54599 1.68042 2.04776 2.49454 2.82572 3.32597 3.54081 3.64721 3.75645 3.84081 3.91993 3.97229 3.98701 4.14111 4.19699 4.24692 4.32079 4.34740 4.36964 4.44054 4.44969 4.52851 4.54859 4.55520 4.63005 4.70930 4.74916 4.77403 4.82201 4.84833 4.86618 4.89984 4.92680 4.95486 4.98571 5.00931 5.06243 5.17701 5.21341 5.30278 5.37236 5.40247 5.43507 5.44596 5.56666 5.61281 5.65472 5.75828 6.19055 6.22031 6.50036 7.09139 7.23561 7.77724 8.43399 9.25393 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.001793 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.962310 B =15613.387072 C =16314.026845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.054 3.946 4 C -0.108 4.108 5 C -0.098 4.098 6 C -0.129 4.129 7 C 0.502 3.498 8 O -0.594 6.594 9 N -0.612 5.612 10 C 0.101 3.899 11 C -0.129 4.129 12 C -0.115 4.115 13 C -0.073 4.073 14 H 0.057 0.943 15 C -0.077 4.077 16 H 0.079 0.921 17 C -0.126 4.126 18 C 0.186 3.814 19 N -0.629 5.629 20 C -0.245 4.245 21 H 0.085 0.915 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.982 3.018 25 H -0.274 1.274 26 H -0.295 1.295 27 H -0.277 1.277 28 C 0.142 3.858 29 C 0.120 3.880 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.056 0.944 49 H 0.010 0.990 50 H -0.001 1.001 51 H 0.246 0.754 52 H 0.016 0.984 53 H 0.046 0.954 54 H 0.076 0.924 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.243 -28.132 -8.516 32.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.022 4.022 4 C -0.146 4.146 5 C -0.136 4.136 6 C -0.168 4.168 7 C 0.293 3.707 8 O -0.475 6.475 9 N -0.344 5.344 10 C -0.020 4.020 11 C -0.167 4.167 12 C -0.153 4.153 13 C -0.093 4.093 14 H 0.076 0.924 15 C -0.097 4.097 16 H 0.097 0.903 17 C -0.164 4.164 18 C 0.061 3.939 19 N -0.356 5.356 20 C -0.374 4.374 21 H 0.102 0.898 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.809 3.191 25 H -0.199 1.199 26 H -0.221 1.221 27 H -0.203 1.203 28 C 0.017 3.983 29 C -0.003 4.003 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.133 0.867 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.028 0.972 50 H 0.017 0.983 51 H 0.055 0.945 52 H 0.034 0.966 53 H 0.064 0.936 54 H 0.094 0.906 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.433 -27.603 -8.474 31.846 hybrid contribution 0.334 1.883 0.694 2.034 sum -13.098 -25.720 -7.780 29.893 Atomic orbital electron populations 1.22914 0.79758 1.03802 1.00674 1.87814 1.21271 1.28888 1.95592 1.22640 0.94793 0.84210 1.00548 1.21434 0.92444 0.96634 1.04084 1.21163 0.93637 0.96349 1.02484 1.21713 0.95817 0.92491 1.06765 1.21507 0.81759 0.92758 0.74698 1.90694 1.61658 1.42928 1.52214 1.48308 1.05737 1.07899 1.72423 1.22096 0.92833 0.87356 0.99710 1.21909 0.98693 0.97612 0.98493 1.21595 0.97213 0.93574 1.02892 1.21373 0.95988 0.93875 0.98017 0.92421 1.22202 0.95938 0.93463 0.98060 0.90282 1.22751 0.97325 0.95960 1.00409 1.20861 0.87350 0.92246 0.93492 1.44824 1.25774 1.01681 1.63293 1.19481 1.01287 0.89837 1.26784 0.89769 1.25726 1.01237 0.97145 1.02172 1.70220 1.35151 1.05318 1.49634 0.85108 0.78686 0.76872 0.78407 1.19934 1.22121 1.20270 1.21696 0.97436 0.83966 0.95171 1.21592 0.95807 0.84676 0.98270 0.88408 0.93516 0.93386 0.93270 0.93011 0.90379 0.90081 0.92321 0.92724 0.86397 0.85945 0.86724 0.89625 0.92112 0.87964 0.91839 0.90788 0.90800 0.92483 0.97171 0.98324 0.94502 0.96609 0.93556 0.90622 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -6.78 10.70 -148.98 -1.59 -8.37 16 3 C 0.05 0.76 5.94 71.98 0.43 1.19 16 4 C -0.11 -1.26 5.58 30.59 0.17 -1.09 16 5 C -0.10 -1.45 4.50 30.59 0.14 -1.31 16 6 C -0.13 -1.56 4.05 29.84 0.12 -1.44 16 7 C 0.50 11.17 7.70 87.66 0.67 11.84 16 8 O -0.59 -19.35 15.39 -3.05 -0.05 -19.40 16 9 N -0.61 -11.99 2.97 -817.99 -2.43 -14.42 16 10 C 0.10 1.09 6.34 86.36 0.55 1.64 16 11 C -0.13 -1.61 6.08 30.67 0.19 -1.43 16 12 C -0.12 -2.20 5.04 30.62 0.15 -2.04 16 13 C -0.07 -1.87 1.87 -10.56 -0.02 -1.89 16 14 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 15 C -0.08 -2.59 2.56 -9.40 -0.02 -2.62 16 16 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 17 C -0.13 -5.01 5.41 31.78 0.17 -4.84 16 18 C 0.19 9.83 5.37 86.73 0.47 10.29 16 19 N -0.63 -33.85 3.39 -692.00 -2.35 -36.20 16 20 C -0.24 -14.22 10.28 84.03 0.86 -13.36 16 21 H 0.08 4.61 7.83 -2.91 -0.02 4.58 16 22 C -0.07 -4.14 5.49 84.86 0.47 -3.68 16 23 N -0.95 -59.92 10.31 21.65 0.22 -59.69 16 24 Si 0.98 46.96 29.55 68.60 2.03 48.98 16 25 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 28 C 0.14 5.88 5.94 86.86 0.52 6.40 16 29 C 0.12 2.97 5.41 86.52 0.47 3.43 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 38 H 0.05 1.00 8.10 -2.39 -0.02 0.99 16 39 H 0.12 0.92 7.69 -2.39 -0.02 0.90 16 40 H 0.12 0.82 7.94 -2.39 -0.02 0.80 16 41 H 0.11 0.56 5.93 -2.39 -0.01 0.54 16 42 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.06 1.33 7.46 -2.39 -0.02 1.31 16 46 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 47 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 48 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 49 H 0.01 0.59 7.38 -2.39 -0.02 0.57 16 50 H 0.00 -0.09 7.50 -2.39 -0.02 -0.11 16 51 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 52 H 0.02 0.67 7.98 -2.39 -0.02 0.65 16 53 H 0.05 1.81 8.05 -2.39 -0.02 1.79 16 54 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 55 H 0.07 2.04 6.39 -2.39 -0.02 2.03 16 Total: -1.00 -78.74 421.01 3.23 -75.51 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.82 Total: 10.98 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 6.58 Total: 2.61 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -4.55 Total: -110.31 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.64 Total: -27.77 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -78.74 3.23 -75.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717378735.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.523 kcal (2) G-P(sol) polarization free energy of solvation -78.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds