Wall clock time and date at job start Tue Mar 31 2020 22:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99664 * 2 1 4 4 C 1.52999 * 109.47173 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47240 * 175.37076 * 4 3 2 6 6 C 1.50701 * 112.84568 * 297.23654 * 5 4 3 7 7 O 1.21286 * 120.00285 * 113.20860 * 6 5 4 8 8 N 1.34777 * 119.99782 * 293.20401 * 6 5 4 9 9 C 1.46505 * 119.99905 * 175.14239 * 8 6 5 10 10 H 1.09007 * 109.46709 * 324.99743 * 9 8 6 11 11 C 1.52991 * 109.47302 * 84.99639 * 9 8 6 12 12 C 1.53003 * 109.47283 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47309 * 300.00614 * 12 11 9 14 14 C 1.53003 * 109.47240 * 59.99562 * 13 12 11 15 15 C 1.52998 * 109.46888 * 300.00197 * 14 13 12 16 16 H 1.08998 * 109.47418 * 299.99594 * 15 14 13 17 17 C 1.53003 * 109.46888 * 180.02562 * 15 14 13 18 18 N 1.46496 * 109.47056 * 65.00351 * 17 15 14 19 19 C 1.36937 * 119.99899 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00185 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99767 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00277 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47163 * 59.99826 * 23 21 19 25 25 H 1.48503 * 109.47546 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47206 * 300.00373 * 23 21 19 27 27 C 1.53784 * 113.69328 * 68.50119 * 5 4 3 28 28 C 1.53781 * 87.07952 * 89.12756 * 27 5 4 29 29 C 1.53777 * 113.61589 * 166.03986 * 5 4 3 30 30 H 1.09009 * 109.46367 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47554 * 300.00017 * 1 2 3 32 32 H 1.08992 * 109.47361 * 60.00280 * 1 2 3 33 33 H 1.08997 * 109.46789 * 59.99747 * 3 2 1 34 34 H 1.08997 * 109.47001 * 300.00017 * 3 2 1 35 35 H 1.08994 * 109.47474 * 55.36529 * 4 3 2 36 36 H 1.09007 * 109.46891 * 295.36673 * 4 3 2 37 37 H 0.96994 * 120.00182 * 355.14014 * 8 6 5 38 38 H 1.08999 * 109.47714 * 300.00456 * 11 9 8 39 39 H 1.09007 * 109.47153 * 60.00376 * 11 9 8 40 40 H 1.09007 * 109.46553 * 60.00211 * 12 11 9 41 41 H 1.08999 * 109.47463 * 179.97438 * 12 11 9 42 42 H 1.08994 * 109.47088 * 179.97438 * 13 12 11 43 43 H 1.09007 * 109.46984 * 299.99333 * 13 12 11 44 44 H 1.09001 * 109.47190 * 180.02562 * 14 13 12 45 45 H 1.08998 * 109.46760 * 60.00194 * 14 13 12 46 46 H 1.08994 * 109.47100 * 304.99634 * 17 15 14 47 47 H 1.08999 * 109.46812 * 184.99583 * 17 15 14 48 48 H 0.97002 * 120.00355 * 359.97438 * 18 17 15 49 49 H 0.96996 * 120.00180 * 179.97438 * 22 21 19 50 50 H 1.08997 * 113.61637 * 203.68148 * 27 5 4 51 51 H 1.09002 * 113.61001 * 334.58139 * 27 5 4 52 52 H 1.08999 * 113.61720 * 270.88715 * 28 27 5 53 53 H 1.08992 * 113.69086 * 139.99246 * 28 27 5 54 54 H 1.08995 * 113.61591 * 25.34509 * 29 5 4 55 55 H 1.08994 * 113.61507 * 156.16468 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1572 2.5779 -0.1171 6 6 3.8059 3.2693 -1.4092 7 8 3.1065 4.2602 -1.3962 8 7 4.2690 2.7867 -2.5793 9 6 3.8422 3.3938 -3.8424 10 1 2.8056 3.7201 -3.7567 11 6 4.7317 4.5986 -4.1555 12 6 4.2863 5.2322 -5.4750 13 6 4.4061 4.2033 -6.6010 14 6 3.5165 2.9986 -6.2878 15 6 3.9620 2.3650 -4.9684 16 1 4.9985 2.0387 -5.0537 17 6 3.0728 1.1598 -4.6556 18 7 3.2783 0.1245 -5.6715 19 6 2.5841 -1.0536 -5.5986 20 1 1.8854 -1.2197 -4.7920 21 6 2.7784 -2.0344 -6.5616 22 7 3.6296 -1.8318 -7.5449 23 14 1.8321 -3.6418 -6.4618 24 1 0.3747 -3.3628 -6.5229 25 1 2.2176 -4.5147 -7.5997 26 1 2.1518 -4.3260 -5.1832 27 6 3.9457 3.4551 1.1282 28 6 5.2539 2.8587 1.6738 29 6 5.6592 2.6115 0.2110 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8899 33 1 1.6884 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8512 0.5741 -0.8464 36 1 3.8632 0.7171 0.9278 37 1 4.8850 2.0374 -2.5851 38 1 4.6467 5.3314 -3.3531 39 1 5.7683 4.2724 -4.2412 40 1 3.2497 5.5584 -5.3897 41 1 4.9197 6.0908 -5.6979 42 1 4.0884 4.6547 -7.5409 43 1 5.4428 3.8772 -6.6863 44 1 3.6022 2.2654 -7.0898 45 1 2.4800 3.3248 -6.2026 46 1 2.0276 1.4690 -4.6581 47 1 3.3317 0.7622 -3.6743 48 1 3.9056 0.2738 -6.3962 49 1 3.7657 -2.5172 -8.2176 50 1 4.0048 4.5242 0.9244 51 1 3.0654 3.1821 1.7101 52 1 5.1105 1.9432 2.2477 53 1 5.8862 3.5842 2.1854 54 1 6.1622 1.6576 0.0526 55 1 6.1870 3.4491 -0.2447 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722951213.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:14 Heat of formation + Delta-G solvation = -100.428930 kcal Electronic energy + Delta-G solvation = -31742.058004 eV Core-core repulsion = 27777.885394 eV Total energy + Delta-G solvation = -3964.172611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.91083 -40.23599 -38.83535 -38.30060 -36.42514 -35.19900 -33.69195 -32.56574 -31.23222 -30.58907 -27.93567 -27.06273 -26.66378 -26.19777 -24.73655 -23.94482 -23.22516 -22.00661 -21.72951 -20.99430 -19.60763 -19.11809 -18.11840 -17.49067 -17.37141 -17.02883 -16.73170 -16.20927 -16.07028 -15.91773 -15.62671 -15.49796 -15.30057 -15.10862 -14.85238 -14.55978 -14.32934 -14.18043 -13.69372 -13.63540 -13.42642 -13.32988 -13.23120 -12.94238 -12.73732 -12.69414 -12.58498 -12.38023 -12.26255 -12.17725 -12.13365 -12.03992 -11.94319 -11.85847 -11.50846 -11.40440 -11.35318 -11.20398 -11.13717 -10.93113 -10.69032 -10.46117 -9.97589 -8.99163 -7.95109 -5.23222 1.46139 1.48470 1.54783 1.62215 2.21256 2.55351 2.66916 3.37920 3.38552 3.53141 3.59185 3.73524 3.81940 3.89995 3.91196 3.96568 4.06250 4.08661 4.21379 4.24638 4.34821 4.38413 4.43691 4.44199 4.46843 4.49066 4.51708 4.55709 4.62022 4.76633 4.77803 4.81773 4.83057 4.86425 4.93014 4.98581 5.04113 5.09342 5.11004 5.14960 5.16558 5.23300 5.24968 5.27828 5.29852 5.42297 5.47316 5.49138 5.52027 5.61273 6.13096 6.27066 6.57234 7.25132 7.34328 8.08555 8.34343 9.27829 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007930 B = 0.004284 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.875978 B = 6534.420482 C = 9054.663529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.063 3.937 4 C -0.085 4.085 5 C -0.105 4.105 6 C 0.528 3.472 7 O -0.579 6.579 8 N -0.714 5.714 9 C 0.163 3.837 10 H 0.061 0.939 11 C -0.116 4.116 12 C -0.110 4.110 13 C -0.113 4.113 14 C -0.105 4.105 15 C -0.085 4.085 16 H 0.079 0.921 17 C 0.164 3.836 18 N -0.737 5.737 19 C -0.245 4.245 20 H 0.066 0.934 21 C -0.067 4.067 22 N -0.965 5.965 23 Si 0.967 3.033 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.278 1.278 27 C -0.116 4.116 28 C -0.127 4.127 29 C -0.119 4.119 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.408 0.592 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.052 0.948 46 H -0.001 1.001 47 H 0.021 0.979 48 H 0.377 0.623 49 H 0.252 0.748 50 H 0.078 0.922 51 H 0.074 0.926 52 H 0.097 0.903 53 H 0.084 0.916 54 H 0.091 0.909 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 13.136 17.109 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.013 4.013 4 C -0.122 4.122 5 C -0.109 4.109 6 C 0.315 3.685 7 O -0.459 6.459 8 N -0.363 5.363 9 C 0.058 3.942 10 H 0.079 0.921 11 C -0.155 4.155 12 C -0.148 4.148 13 C -0.150 4.150 14 C -0.143 4.143 15 C -0.104 4.104 16 H 0.097 0.903 17 C 0.037 3.963 18 N -0.380 5.380 19 C -0.377 4.377 20 H 0.084 0.916 21 C -0.260 4.260 22 N -0.616 5.616 23 Si 0.796 3.204 24 H -0.208 1.208 25 H -0.218 1.218 26 H -0.205 1.205 27 C -0.154 4.154 28 C -0.164 4.164 29 C -0.156 4.156 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.244 0.756 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.017 0.983 47 H 0.039 0.961 48 H 0.209 0.791 49 H 0.061 0.939 50 H 0.097 0.903 51 H 0.093 0.907 52 H 0.116 0.884 53 H 0.103 0.897 54 H 0.110 0.890 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.825 13.539 17.181 22.207 hybrid contribution -0.717 -1.137 -0.815 1.572 sum 3.108 12.402 16.366 20.768 Atomic orbital electron populations 1.22895 0.79818 1.03784 1.00469 1.87830 1.21240 1.28490 1.95505 1.22512 0.94722 0.84245 0.99852 1.21206 0.92354 0.93826 1.04842 1.22153 1.00399 0.96075 0.92240 1.20845 0.78333 0.83601 0.85682 1.90648 1.39839 1.27565 1.87807 1.46099 1.48622 1.36234 1.05363 1.20810 0.98547 0.92778 0.82093 0.92072 1.21807 0.99619 0.96187 0.97872 1.21473 1.01716 0.98175 0.93476 1.21536 0.99919 0.94873 0.98718 1.21433 0.99439 0.97554 0.95873 1.21433 1.00146 0.93811 0.95033 0.90288 1.20701 0.95632 0.88343 0.91584 1.42476 1.50543 1.14998 1.30028 1.19485 1.17146 0.93611 1.07466 0.91597 1.25451 1.01173 1.01827 0.97564 1.69787 1.40255 1.35532 1.15997 0.85309 0.78300 0.79870 0.76887 1.20759 1.21782 1.20454 1.22868 0.99635 0.98961 0.93903 1.22815 0.95949 1.02021 0.95591 1.22970 0.91476 1.03750 0.97410 0.88446 0.92210 0.94862 0.91731 0.95898 0.91164 0.87761 0.75641 0.92242 0.90673 0.92467 0.89864 0.90966 0.91312 0.93043 0.92931 0.98297 0.96136 0.79054 0.93928 0.90330 0.90707 0.88445 0.89721 0.89049 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -11.78 10.70 -148.98 -1.59 -13.37 16 3 C 0.06 1.61 5.66 71.98 0.41 2.02 16 4 C -0.08 -1.81 4.95 30.59 0.15 -1.66 16 5 C -0.11 -2.11 0.79 -52.40 -0.04 -2.15 16 6 C 0.53 14.10 5.71 87.66 0.50 14.60 16 7 O -0.58 -19.41 15.86 -3.05 -0.05 -19.46 16 8 N -0.71 -18.37 4.30 -442.52 -1.90 -20.28 16 9 C 0.16 4.56 1.86 44.99 0.08 4.64 16 10 H 0.06 2.02 7.65 -2.38 -0.02 2.00 16 11 C -0.12 -2.71 5.49 30.59 0.17 -2.54 16 12 C -0.11 -2.37 5.92 30.60 0.18 -2.18 16 13 C -0.11 -2.68 5.92 30.60 0.18 -2.50 16 14 C -0.10 -3.27 5.08 30.59 0.16 -3.12 16 15 C -0.08 -2.70 1.80 -10.79 -0.02 -2.72 16 16 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 17 C 0.16 6.75 5.57 86.38 0.48 7.23 16 18 N -0.74 -37.60 5.33 -343.46 -1.83 -39.43 16 19 C -0.25 -13.95 9.99 84.03 0.84 -13.11 16 20 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 23 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 27 C -0.12 -2.05 6.75 31.12 0.21 -1.84 16 28 C -0.13 -1.55 7.73 31.12 0.24 -1.31 16 29 C -0.12 -1.72 7.22 31.12 0.22 -1.50 16 30 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 1.42 7.08 -2.39 -0.02 1.40 16 34 H 0.02 0.70 7.34 -2.39 -0.02 0.68 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 36 H 0.10 1.79 7.31 -2.38 -0.02 1.78 16 37 H 0.41 9.52 8.40 -92.71 -0.78 8.74 16 38 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 39 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.05 1.90 7.18 -2.39 -0.02 1.88 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.02 0.85 7.30 -2.39 -0.02 0.83 16 48 H 0.38 20.10 6.85 -92.71 -0.63 19.46 16 49 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 50 H 0.08 1.61 7.74 -2.39 -0.02 1.59 16 51 H 0.07 1.27 7.01 -2.39 -0.02 1.25 16 52 H 0.10 0.99 7.60 -2.39 -0.02 0.97 16 53 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 54 H 0.09 1.13 8.10 -2.39 -0.02 1.12 16 55 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 Total: -1.00 -69.98 424.81 1.86 -68.12 By element: Atomic # 1 Polarization: 42.50 SS G_CDS: -0.55 Total: 41.94 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 5.48 Total: -7.72 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -3.45 Total: -118.17 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -1.64 Total: -32.83 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -69.98 1.86 -68.12 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722951213.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.309 kcal (2) G-P(sol) polarization free energy of solvation -69.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds