Wall clock time and date at job start Tue Mar 31 2020 22:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00040 * 2 1 4 4 C 1.52999 * 109.47102 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47019 * 175.37439 * 4 3 2 6 6 C 1.50704 * 112.84729 * 297.25067 * 5 4 3 7 7 O 1.21284 * 119.99693 * 113.20817 * 6 5 4 8 8 N 1.34780 * 120.00061 * 293.20852 * 6 5 4 9 9 C 1.46500 * 119.99750 * 175.15555 * 8 6 5 10 10 H 1.08998 * 109.47166 * 325.00443 * 9 8 6 11 11 C 1.53005 * 109.46776 * 85.00234 * 9 8 6 12 12 C 1.53005 * 109.47053 * 59.99797 * 11 9 8 13 13 C 1.53004 * 109.46830 * 59.99782 * 12 11 9 14 14 C 1.52995 * 109.47470 * 299.99848 * 13 12 11 15 15 C 1.53001 * 109.47177 * 205.00083 * 9 8 6 16 16 H 1.08991 * 109.46902 * 180.02562 * 15 9 8 17 17 C 1.52995 * 109.46769 * 60.00356 * 15 9 8 18 18 N 1.46508 * 109.47032 * 175.00025 * 17 15 9 19 19 C 1.36938 * 119.99820 * 179.97438 * 18 17 15 20 20 H 1.07989 * 120.00429 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99441 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00607 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99967 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47104 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47382 * 119.99935 * 23 21 19 26 26 H 1.48503 * 109.47112 * 240.00089 * 23 21 19 27 27 C 1.53772 * 113.69350 * 68.52181 * 5 4 3 28 28 C 1.53780 * 87.08316 * 89.12782 * 27 5 4 29 29 C 1.53781 * 113.61394 * 166.06158 * 5 4 3 30 30 H 1.08997 * 109.46770 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47305 * 300.00600 * 1 2 3 32 32 H 1.08997 * 109.46698 * 60.00332 * 1 2 3 33 33 H 1.09000 * 109.47177 * 59.99724 * 3 2 1 34 34 H 1.09000 * 109.46995 * 299.99796 * 3 2 1 35 35 H 1.08997 * 109.47284 * 55.37017 * 4 3 2 36 36 H 1.09005 * 109.46857 * 295.36784 * 4 3 2 37 37 H 0.96997 * 120.00009 * 355.16167 * 8 6 5 38 38 H 1.09004 * 109.47127 * 179.97438 * 11 9 8 39 39 H 1.09001 * 109.47317 * 299.99721 * 11 9 8 40 40 H 1.08992 * 109.47137 * 179.97438 * 12 11 9 41 41 H 1.08994 * 109.46923 * 299.99876 * 12 11 9 42 42 H 1.09004 * 109.47178 * 60.00216 * 13 12 11 43 43 H 1.08998 * 109.47110 * 179.97438 * 13 12 11 44 44 H 1.09004 * 109.47220 * 300.00342 * 14 13 12 45 45 H 1.09001 * 109.47306 * 180.02562 * 14 13 12 46 46 H 1.09005 * 109.47286 * 294.99711 * 17 15 9 47 47 H 1.08999 * 109.47531 * 54.99983 * 17 15 9 48 48 H 0.97001 * 119.99756 * 0.02562 * 18 17 15 49 49 H 0.96994 * 120.00115 * 179.97438 * 22 21 19 50 50 H 1.09000 * 113.61458 * 203.67733 * 27 5 4 51 51 H 1.09003 * 113.61831 * 334.57634 * 27 5 4 52 52 H 1.09000 * 113.61388 * 270.88171 * 28 27 5 53 53 H 1.09000 * 113.61455 * 139.97686 * 28 27 5 54 54 H 1.09002 * 113.61940 * 25.34268 * 29 5 4 55 55 H 1.09000 * 113.61359 * 156.16489 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1575 2.5777 -0.1157 6 6 3.8070 3.2689 -1.4082 7 8 3.1077 4.2597 -1.3957 8 7 4.2707 2.7860 -2.5780 9 6 3.8448 3.3932 -3.8413 10 1 2.8084 3.7199 -3.7563 11 6 4.7352 4.5976 -4.1539 12 6 6.1900 4.1390 -4.2732 13 6 6.3097 3.1102 -5.3994 14 6 5.4194 1.9059 -5.0868 15 6 3.9646 2.3645 -4.9675 16 1 3.6481 2.8164 -5.9075 17 6 3.0742 1.1602 -4.6549 18 7 3.0958 0.2300 -5.7866 19 6 2.3682 -0.9289 -5.7343 20 1 1.7781 -1.1570 -4.8591 21 6 2.3891 -1.8104 -6.8063 22 7 3.1087 -1.5327 -7.8729 23 14 1.3960 -3.3909 -6.7355 24 1 0.6791 -3.4673 -5.4372 25 1 0.4112 -3.4071 -7.8468 26 1 2.3085 -4.5552 -6.8657 27 6 3.9454 3.4550 1.1293 28 6 5.2533 2.8586 1.6756 29 6 5.6593 2.6111 0.2131 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8519 0.5736 -0.8447 36 1 3.8625 0.7172 0.9295 37 1 4.8863 2.0364 -2.5833 38 1 4.4186 5.0491 -5.0942 39 1 4.6499 5.3305 -3.3517 40 1 6.8242 4.9969 -4.4964 41 1 6.5067 3.6873 -3.3333 42 1 5.9929 3.5620 -6.3395 43 1 7.3461 2.7839 -5.4847 44 1 5.7362 1.4541 -4.1468 45 1 5.5050 1.1728 -5.8889 46 1 3.4455 0.6556 -3.7628 47 1 2.0526 1.4986 -4.4822 48 1 3.6262 0.4347 -6.5725 49 1 3.1236 -2.1489 -8.6218 50 1 4.0048 4.5241 0.9253 51 1 3.0647 3.1823 1.7108 52 1 5.1095 1.9433 2.2498 53 1 5.8845 3.5854 2.1870 54 1 6.1624 1.6571 0.0551 55 1 6.1875 3.4487 -0.2425 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722951214.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:19 Heat of formation + Delta-G solvation = -97.333804 kcal Electronic energy + Delta-G solvation = -32040.266363 eV Core-core repulsion = 28076.227967 eV Total energy + Delta-G solvation = -3964.038396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.97992 -40.34607 -38.80743 -38.25164 -36.46073 -34.66975 -33.71808 -32.54582 -31.24965 -30.86740 -27.95584 -27.06692 -26.65405 -26.19558 -24.69717 -23.88597 -23.31970 -22.37452 -21.91670 -20.07330 -19.76292 -19.14333 -18.19209 -17.48812 -17.18623 -16.82805 -16.71940 -16.32437 -16.20537 -15.90462 -15.70836 -15.58688 -15.26682 -15.02718 -14.92891 -14.63093 -14.31176 -14.06367 -13.67441 -13.47292 -13.37968 -13.24189 -13.13182 -12.98241 -12.86778 -12.73860 -12.59631 -12.56751 -12.37408 -12.16293 -12.10312 -12.04960 -11.92977 -11.86020 -11.43091 -11.38940 -11.19337 -11.18436 -11.04527 -10.87079 -10.68758 -10.48859 -9.96118 -8.99850 -7.96088 -5.24217 1.45884 1.45993 1.56358 1.65144 2.25495 2.54576 2.67342 3.37370 3.39828 3.55828 3.60862 3.78308 3.80128 3.85320 3.91188 3.97095 4.07051 4.08148 4.22131 4.23464 4.36980 4.41824 4.43931 4.46315 4.47314 4.50580 4.57670 4.62698 4.65821 4.73234 4.77373 4.78502 4.83082 4.90122 4.93622 5.00211 5.00730 5.08383 5.10670 5.15765 5.17541 5.25796 5.26887 5.30152 5.35444 5.46858 5.48110 5.51639 5.52429 5.63479 6.13116 6.26475 6.59884 7.28086 7.33578 8.07945 8.33348 9.27338 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008780 B = 0.004235 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.467994 B = 6610.261363 C = 8956.894705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.063 3.937 4 C -0.084 4.084 5 C -0.105 4.105 6 C 0.527 3.473 7 O -0.580 6.580 8 N -0.706 5.706 9 C 0.163 3.837 10 H 0.060 0.940 11 C -0.121 4.121 12 C -0.107 4.107 13 C -0.114 4.114 14 C -0.103 4.103 15 C -0.089 4.089 16 H 0.075 0.925 17 C 0.166 3.834 18 N -0.739 5.739 19 C -0.243 4.243 20 H 0.067 0.933 21 C -0.069 4.069 22 N -0.966 5.966 23 Si 0.968 3.032 24 H -0.270 1.270 25 H -0.293 1.293 26 H -0.290 1.290 27 C -0.116 4.116 28 C -0.127 4.127 29 C -0.118 4.118 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.064 0.936 34 H 0.023 0.977 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.407 0.593 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.048 0.952 46 H 0.022 0.978 47 H -0.002 1.002 48 H 0.376 0.624 49 H 0.252 0.748 50 H 0.077 0.923 51 H 0.073 0.927 52 H 0.097 0.903 53 H 0.084 0.916 54 H 0.092 0.908 55 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.338 11.348 19.162 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.014 4.014 4 C -0.122 4.122 5 C -0.109 4.109 6 C 0.314 3.686 7 O -0.460 6.460 8 N -0.357 5.357 9 C 0.057 3.943 10 H 0.079 0.921 11 C -0.159 4.159 12 C -0.144 4.144 13 C -0.151 4.151 14 C -0.141 4.141 15 C -0.108 4.108 16 H 0.094 0.906 17 C 0.039 3.961 18 N -0.382 5.382 19 C -0.375 4.375 20 H 0.085 0.915 21 C -0.262 4.262 22 N -0.617 5.617 23 Si 0.797 3.203 24 H -0.195 1.195 25 H -0.220 1.220 26 H -0.217 1.217 27 C -0.154 4.154 28 C -0.164 4.164 29 C -0.155 4.155 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.243 0.757 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.040 0.960 47 H 0.016 0.984 48 H 0.209 0.791 49 H 0.061 0.939 50 H 0.096 0.904 51 H 0.092 0.908 52 H 0.116 0.884 53 H 0.102 0.898 54 H 0.110 0.890 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.815 11.754 19.241 23.554 hybrid contribution -0.918 -0.977 -1.013 1.680 sum 5.897 10.777 18.228 21.982 Atomic orbital electron populations 1.22889 0.79857 1.03767 1.00435 1.87823 1.21186 1.28495 1.95503 1.22517 0.94788 0.84240 0.99835 1.21208 0.92270 0.93851 1.04866 1.22150 1.00426 0.96050 0.92239 1.20845 0.78365 0.83627 0.85723 1.90648 1.39905 1.27644 1.87815 1.46069 1.48473 1.36078 1.05093 1.20749 0.98138 0.92822 0.82578 0.92144 1.21827 0.95989 0.96271 1.01827 1.21438 0.95285 0.98879 0.98802 1.21530 0.99630 0.95148 0.98793 1.21439 0.93100 0.98007 1.01576 1.21457 0.96556 0.94602 0.98160 0.90639 1.20683 0.95490 0.89730 0.90176 1.42516 1.56686 1.21187 1.17783 1.19564 1.20352 0.97080 1.00470 0.91486 1.25463 1.02101 1.02207 0.96389 1.69801 1.46073 1.38618 1.07170 0.85159 0.77954 0.79829 0.77363 1.19492 1.21975 1.21686 1.22865 0.99635 0.98959 0.93970 1.22817 0.95916 1.01994 0.95652 1.22974 0.91441 1.03798 0.97334 0.88448 0.92237 0.94926 0.91814 0.95903 0.91095 0.87726 0.75652 0.90747 0.92189 0.90624 0.91591 0.92113 0.90755 0.91748 0.93310 0.96033 0.98417 0.79083 0.93946 0.90390 0.90803 0.88438 0.89767 0.88961 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -11.59 10.70 -148.98 -1.59 -13.19 16 3 C 0.06 1.57 5.66 71.98 0.41 1.98 16 4 C -0.08 -1.74 4.95 30.59 0.15 -1.59 16 5 C -0.11 -2.04 0.79 -52.40 -0.04 -2.08 16 6 C 0.53 13.77 5.71 87.66 0.50 14.27 16 7 O -0.58 -19.29 15.86 -3.04 -0.05 -19.34 16 8 N -0.71 -17.59 3.61 -442.51 -1.60 -19.19 16 9 C 0.16 4.51 2.19 44.99 0.10 4.61 16 10 H 0.06 1.98 7.65 -2.39 -0.02 1.96 16 11 C -0.12 -2.79 5.60 30.60 0.17 -2.62 16 12 C -0.11 -2.06 5.77 30.60 0.18 -1.88 16 13 C -0.11 -2.49 5.92 30.59 0.18 -2.31 16 14 C -0.10 -2.93 4.90 30.59 0.15 -2.78 16 15 C -0.09 -2.80 2.02 -10.79 -0.02 -2.82 16 16 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 17 C 0.17 6.79 5.42 86.38 0.47 7.26 16 18 N -0.74 -37.77 5.33 -343.44 -1.83 -39.60 16 19 C -0.24 -13.82 9.99 84.03 0.84 -12.98 16 20 H 0.07 3.77 7.83 -2.92 -0.02 3.75 16 21 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 22 N -0.97 -59.00 13.06 21.65 0.28 -58.71 16 23 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 C -0.12 -2.02 6.74 31.12 0.21 -1.81 16 28 C -0.13 -1.48 7.73 31.12 0.24 -1.24 16 29 C -0.12 -1.61 7.22 31.12 0.22 -1.39 16 30 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 1.38 7.08 -2.39 -0.02 1.37 16 34 H 0.02 0.69 7.34 -2.39 -0.02 0.67 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 36 H 0.10 1.72 7.31 -2.38 -0.02 1.70 16 37 H 0.41 9.20 6.67 -92.71 -0.62 8.58 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.48 8.11 -2.39 -0.02 1.46 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.20 7.60 -2.39 -0.02 1.19 16 42 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 1.68 6.51 -2.39 -0.02 1.66 16 45 H 0.05 1.70 7.18 -2.39 -0.02 1.68 16 46 H 0.02 0.88 7.61 -2.38 -0.02 0.86 16 47 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 48 H 0.38 20.18 6.85 -92.71 -0.64 19.54 16 49 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 50 H 0.08 1.58 7.74 -2.39 -0.02 1.56 16 51 H 0.07 1.24 7.01 -2.39 -0.02 1.22 16 52 H 0.10 0.93 7.60 -2.39 -0.02 0.91 16 53 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 54 H 0.09 1.04 8.10 -2.39 -0.02 1.02 16 55 H 0.09 1.21 8.09 -2.39 -0.02 1.19 16 Total: -1.00 -70.20 420.71 2.32 -67.88 By element: Atomic # 1 Polarization: 40.84 SS G_CDS: -0.39 Total: 40.44 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 5.47 Total: -7.06 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -3.15 Total: -117.50 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -1.64 Total: -32.53 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -70.20 2.32 -67.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722951214.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.450 kcal (2) G-P(sol) polarization free energy of solvation -70.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds