Wall clock time and date at job start Tue Mar 31 2020 22:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00053 * 2 1 4 4 C 1.52997 * 109.47539 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47579 * 175.35901 * 4 3 2 6 6 C 1.50706 * 112.84706 * 296.98096 * 5 4 3 7 7 O 1.21282 * 119.99429 * 113.09055 * 6 5 4 8 8 N 1.34775 * 120.00222 * 293.09256 * 6 5 4 9 9 C 1.46498 * 119.99643 * 174.86296 * 8 6 5 10 10 H 1.08995 * 109.47268 * 35.00535 * 9 8 6 11 11 C 1.52997 * 109.46948 * 274.99806 * 9 8 6 12 12 C 1.53003 * 109.47412 * 300.00090 * 11 9 8 13 13 C 1.52995 * 109.47142 * 300.00305 * 12 11 9 14 14 C 1.53004 * 109.47109 * 60.00036 * 13 12 11 15 15 C 1.53000 * 109.47060 * 299.99454 * 14 13 12 16 16 H 1.09004 * 109.47404 * 300.00305 * 15 14 13 17 17 C 1.52997 * 109.47020 * 180.02562 * 15 14 13 18 18 N 1.46502 * 109.47236 * 65.00360 * 17 15 14 19 19 C 1.36939 * 119.99770 * 180.27118 * 18 17 15 20 20 H 1.08000 * 119.99725 * 359.72753 * 19 18 17 21 21 C 1.38811 * 119.99880 * 179.72357 * 19 18 17 22 22 N 1.31617 * 120.00149 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99730 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46812 * 90.00256 * 23 21 19 25 25 H 1.48502 * 109.46887 * 209.99900 * 23 21 19 26 26 H 1.48494 * 109.47580 * 329.99980 * 23 21 19 27 27 C 1.53783 * 113.69308 * 68.24754 * 5 4 3 28 28 C 1.53785 * 87.07689 * 89.13240 * 27 5 4 29 29 C 1.53774 * 87.08448 * 25.43334 * 28 27 5 30 30 H 1.09006 * 109.47383 * 60.00022 * 1 2 3 31 31 H 1.09003 * 109.47302 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47224 * 299.99830 * 1 2 3 33 33 H 1.09003 * 109.47124 * 59.99611 * 3 2 1 34 34 H 1.08999 * 109.47195 * 300.00262 * 3 2 1 35 35 H 1.09001 * 109.47529 * 55.35176 * 4 3 2 36 36 H 1.09008 * 109.47176 * 295.35789 * 4 3 2 37 37 H 0.97000 * 119.99656 * 354.86307 * 8 6 5 38 38 H 1.08998 * 109.47586 * 60.00590 * 11 9 8 39 39 H 1.09004 * 109.46831 * 180.02562 * 11 9 8 40 40 H 1.08998 * 109.46547 * 60.00357 * 12 11 9 41 41 H 1.08992 * 109.47201 * 180.02562 * 12 11 9 42 42 H 1.09004 * 109.47179 * 179.97438 * 13 12 11 43 43 H 1.08998 * 109.47442 * 299.99504 * 13 12 11 44 44 H 1.09001 * 109.46985 * 179.97438 * 14 13 12 45 45 H 1.08991 * 109.47089 * 59.99661 * 14 13 12 46 46 H 1.08998 * 109.47019 * 305.00030 * 17 15 14 47 47 H 1.09011 * 109.46879 * 185.00383 * 17 15 14 48 48 H 0.96997 * 119.99757 * 0.02562 * 18 17 15 49 49 H 0.97001 * 120.00196 * 180.02562 * 22 21 19 50 50 H 1.09005 * 113.61652 * 203.67275 * 27 5 4 51 51 H 1.09000 * 113.61520 * 334.58659 * 27 5 4 52 52 H 1.08996 * 113.61381 * 270.88302 * 28 27 5 53 53 H 1.09002 * 113.61226 * 139.98645 * 28 27 5 54 54 H 1.08997 * 113.61469 * 220.01836 * 29 28 27 55 55 H 1.09001 * 113.61533 * 89.11764 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5353 1.1847 -0.0006 5 6 4.1572 2.5777 -0.1174 6 6 3.8110 3.2665 -1.4123 7 8 3.1095 4.2558 -1.4042 8 7 4.2808 2.7830 -2.5794 9 6 3.8542 3.3835 -3.8457 10 1 3.7207 4.4570 -3.7120 11 6 2.5305 2.7560 -4.2873 12 6 2.7179 1.2491 -4.4750 13 6 3.7835 0.9969 -5.5435 14 6 5.1072 1.6243 -5.1018 15 6 4.9198 3.1312 -4.9142 16 1 4.6024 3.5780 -5.8565 17 6 6.2436 3.7587 -4.4732 18 7 7.2308 3.6216 -5.5470 19 6 8.4996 4.1078 -5.3767 20 1 8.7712 4.5962 -4.4525 21 6 9.4366 3.9729 -6.3920 22 7 10.6562 4.4397 -6.2282 23 14 8.9664 3.1287 -7.9907 24 1 8.4421 4.1366 -8.9469 25 1 10.1630 2.4695 -8.5728 26 1 7.9205 2.1091 -7.7232 27 6 3.9405 3.4573 1.1253 28 6 5.2468 2.8623 1.6772 29 6 5.6579 2.6124 0.2167 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8512 0.5738 -0.8463 36 1 3.8632 0.7171 0.9278 37 1 4.9013 2.0375 -2.5808 38 1 1.7713 2.9357 -3.5261 39 1 2.2133 3.2025 -5.2297 40 1 3.0353 0.8024 -3.5327 41 1 1.7751 0.8022 -4.7900 42 1 3.9173 -0.0767 -5.6769 43 1 3.4661 1.4436 -6.4857 44 1 5.8664 1.4442 -5.8628 45 1 5.4245 1.1776 -4.1596 46 1 6.6063 3.2512 -3.5793 47 1 6.0896 4.8154 -4.2539 48 1 6.9866 3.1834 -6.3771 49 1 11.3109 4.3457 -6.9377 50 1 4.0003 4.5261 0.9196 51 1 3.0580 3.1852 1.7043 52 1 5.1013 1.9480 2.2525 53 1 5.8759 3.5903 2.1895 54 1 6.1618 1.6583 0.0621 55 1 6.1871 3.4501 -0.2374 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722951215.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:22 Heat of formation + Delta-G solvation = -94.707339 kcal Electronic energy + Delta-G solvation = -31912.628757 eV Core-core repulsion = 27948.704253 eV Total energy + Delta-G solvation = -3963.924504 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.00211 -40.37383 -38.78437 -38.27049 -36.61767 -34.67389 -33.87554 -32.54251 -31.63451 -30.93245 -27.95515 -27.16232 -26.69290 -26.18973 -24.41597 -23.84668 -23.30825 -22.37575 -22.02574 -20.16131 -19.84630 -19.50799 -18.22410 -17.44181 -17.13090 -16.90373 -16.61307 -16.47464 -16.11071 -15.97470 -15.74781 -15.56070 -15.49171 -14.98785 -14.78036 -14.61739 -14.31445 -14.23105 -13.82530 -13.67717 -13.41494 -13.33663 -13.14580 -13.04947 -12.93521 -12.74245 -12.58296 -12.53456 -12.34925 -12.17244 -12.14270 -12.04968 -11.91840 -11.85411 -11.43755 -11.43010 -11.22686 -11.20479 -11.06313 -10.90807 -10.64883 -10.51624 -9.96487 -9.30538 -8.03546 -5.37412 1.36748 1.41243 1.48516 1.64593 2.23396 2.47800 2.68605 3.27705 3.37152 3.42526 3.57442 3.74527 3.79310 3.81079 3.88180 3.91696 3.97983 4.10631 4.20432 4.25623 4.30366 4.39327 4.43900 4.47102 4.50549 4.53835 4.55178 4.61430 4.66443 4.70991 4.75964 4.80530 4.84015 4.88247 4.91820 4.99726 5.01619 5.04540 5.07469 5.14239 5.14527 5.22414 5.24127 5.27974 5.33073 5.42578 5.47707 5.50711 5.62273 5.73899 6.16954 6.20025 6.57998 7.06957 7.27071 7.81994 8.03077 9.18186 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.003326 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.860998 B = 8417.536128 C = 9690.078333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.065 3.935 4 C -0.081 4.081 5 C -0.101 4.101 6 C 0.527 3.473 7 O -0.581 6.581 8 N -0.707 5.707 9 C 0.159 3.841 10 H 0.065 0.935 11 C -0.119 4.119 12 C -0.108 4.108 13 C -0.114 4.114 14 C -0.110 4.110 15 C -0.092 4.092 16 H 0.086 0.914 17 C 0.165 3.835 18 N -0.753 5.753 19 C -0.235 4.235 20 H 0.051 0.949 21 C -0.064 4.064 22 N -0.985 5.985 23 Si 0.956 3.044 24 H -0.280 1.280 25 H -0.295 1.295 26 H -0.245 1.245 27 C -0.117 4.117 28 C -0.128 4.128 29 C -0.127 4.127 30 H 0.041 0.959 31 H 0.101 0.899 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.033 0.967 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.407 0.593 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.027 0.973 47 H 0.006 0.994 48 H 0.368 0.632 49 H 0.258 0.742 50 H 0.069 0.931 51 H 0.082 0.918 52 H 0.105 0.895 53 H 0.075 0.925 54 H 0.093 0.907 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.372 -12.381 13.092 28.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.012 4.012 4 C -0.119 4.119 5 C -0.104 4.104 6 C 0.314 3.686 7 O -0.461 6.461 8 N -0.358 5.358 9 C 0.054 3.946 10 H 0.083 0.917 11 C -0.158 4.158 12 C -0.145 4.145 13 C -0.151 4.151 14 C -0.148 4.148 15 C -0.112 4.112 16 H 0.104 0.896 17 C 0.039 3.961 18 N -0.399 5.399 19 C -0.366 4.366 20 H 0.069 0.931 21 C -0.255 4.255 22 N -0.635 5.635 23 Si 0.783 3.217 24 H -0.206 1.206 25 H -0.222 1.222 26 H -0.169 1.169 27 C -0.154 4.154 28 C -0.165 4.165 29 C -0.165 4.165 30 H 0.059 0.941 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.244 0.756 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.045 0.955 47 H 0.024 0.976 48 H 0.202 0.798 49 H 0.067 0.933 50 H 0.088 0.912 51 H 0.100 0.900 52 H 0.123 0.877 53 H 0.094 0.906 54 H 0.112 0.888 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.616 -11.753 13.200 28.703 hybrid contribution 0.533 0.309 -1.171 1.323 sum -22.083 -11.444 12.029 27.629 Atomic orbital electron populations 1.22907 0.79754 1.03863 1.00511 1.87808 1.21179 1.28052 1.95531 1.22456 0.94180 0.84397 1.00127 1.21181 0.92644 0.92837 1.05222 1.22132 0.99334 0.96878 0.92030 1.20832 0.78498 0.83469 0.85752 1.90654 1.40223 1.27407 1.87835 1.46067 1.47936 1.36684 1.05157 1.20784 0.93823 0.97435 0.82604 0.91685 1.21824 0.95433 0.97011 1.01518 1.21432 0.99200 0.94749 0.99152 1.21535 0.93793 1.00979 0.98793 1.21531 0.98183 0.93332 1.01738 1.21529 0.93366 0.97453 0.98821 0.89559 1.20705 0.88147 0.96608 0.90622 1.42658 1.09204 1.71211 1.16800 1.18996 0.87822 1.29370 1.00425 0.93110 1.25536 0.95450 1.02339 1.02209 1.69893 1.05035 1.53560 1.35052 0.85394 0.77574 0.79078 0.79653 1.20635 1.22208 1.16943 1.22847 0.99545 0.98722 0.94325 1.22836 0.96103 1.02136 0.95438 1.22971 0.92420 1.03355 0.97753 0.94053 0.88085 0.93261 0.92543 0.94877 0.89971 0.88043 0.75585 0.92706 0.90230 0.91994 0.90878 0.90737 0.91552 0.92698 0.91607 0.95517 0.97553 0.79842 0.93310 0.91201 0.89969 0.87651 0.90645 0.88814 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -7.50 10.70 -148.98 -1.59 -9.10 16 3 C 0.06 1.16 5.65 71.98 0.41 1.57 16 4 C -0.08 -1.28 4.95 30.59 0.15 -1.13 16 5 C -0.10 -1.92 0.79 -52.40 -0.04 -1.96 16 6 C 0.53 13.53 5.73 87.66 0.50 14.03 16 7 O -0.58 -19.31 15.82 -3.04 -0.05 -19.35 16 8 N -0.71 -16.74 3.61 -442.53 -1.60 -18.34 16 9 C 0.16 4.05 2.27 44.99 0.10 4.15 16 10 H 0.06 1.99 7.51 -2.39 -0.02 1.98 16 11 C -0.12 -2.49 5.60 30.59 0.17 -2.32 16 12 C -0.11 -1.89 5.77 30.59 0.18 -1.71 16 13 C -0.11 -2.12 5.92 30.59 0.18 -1.93 16 14 C -0.11 -2.67 4.90 30.60 0.15 -2.52 16 15 C -0.09 -2.57 2.02 -10.79 -0.02 -2.59 16 16 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 17 C 0.17 6.26 5.42 86.38 0.47 6.73 16 18 N -0.75 -34.77 5.13 -343.44 -1.76 -36.54 16 19 C -0.24 -13.54 10.47 84.03 0.88 -12.66 16 20 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 21 C -0.06 -3.78 5.50 84.86 0.47 -3.32 16 22 N -0.98 -63.55 13.97 21.65 0.30 -63.25 16 23 Si 0.96 45.01 27.74 68.60 1.90 46.91 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 26 H -0.25 -10.14 6.52 99.48 0.65 -9.49 16 27 C -0.12 -2.16 6.74 31.12 0.21 -1.95 16 28 C -0.13 -1.87 7.73 31.12 0.24 -1.63 16 29 C -0.13 -2.28 7.22 31.12 0.22 -2.05 16 30 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.94 7.07 -2.39 -0.02 0.92 16 34 H 0.03 0.70 7.35 -2.39 -0.02 0.68 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.28 7.31 -2.38 -0.02 1.26 16 37 H 0.41 8.63 6.67 -92.71 -0.62 8.01 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.06 1.10 7.60 -2.39 -0.02 1.09 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.05 1.56 7.18 -2.39 -0.02 1.54 16 45 H 0.07 1.50 6.50 -2.39 -0.02 1.48 16 46 H 0.03 1.02 7.61 -2.39 -0.02 1.00 16 47 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 48 H 0.37 15.95 4.71 -92.71 -0.44 15.51 16 49 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 50 H 0.07 1.62 7.74 -2.38 -0.02 1.61 16 51 H 0.08 1.32 6.99 -2.39 -0.02 1.30 16 52 H 0.11 1.11 7.60 -2.39 -0.02 1.09 16 53 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 54 H 0.09 1.40 8.10 -2.39 -0.02 1.38 16 55 H 0.07 1.57 8.09 -2.39 -0.02 1.55 16 Total: -1.00 -73.07 417.52 2.47 -70.60 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -0.25 Total: 36.78 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 5.52 Total: -7.72 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -3.06 Total: -118.13 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -1.64 Total: -28.45 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Total: -73.07 2.47 -70.60 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722951215.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.107 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds