Wall clock time and date at job start Tue Mar 31 2020 22:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00227 * 2 1 4 4 C 1.52996 * 109.47380 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47063 * 64.99925 * 4 3 2 6 6 C 1.36939 * 120.00267 * 270.00160 * 5 4 3 7 7 H 1.07992 * 119.99933 * 141.79984 * 6 5 4 8 8 C 1.38816 * 119.99752 * 321.80042 * 6 5 4 9 9 N 1.31617 * 119.99995 * 339.27717 * 8 6 5 10 10 Si 1.86797 * 119.99486 * 159.28072 * 8 6 5 11 11 H 1.48496 * 109.47229 * 90.00255 * 10 8 6 12 12 H 1.48506 * 109.46722 * 209.99956 * 10 8 6 13 13 H 1.48499 * 109.47492 * 329.99706 * 10 8 6 14 14 C 1.46506 * 119.99714 * 90.00270 * 5 4 3 15 15 C 1.53040 * 109.45652 * 244.77759 * 14 5 4 16 16 C 1.53194 * 109.31074 * 178.62868 * 15 14 5 17 17 N 1.46925 * 108.77718 * 54.63334 * 16 15 14 18 18 C 1.34778 * 120.62944 * 126.36540 * 17 16 15 19 19 O 1.21278 * 120.00140 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.99811 * 180.02562 * 18 17 16 21 21 C 1.53000 * 109.47267 * 180.02562 * 20 18 17 22 22 C 1.54886 * 110.48617 * 289.77835 * 21 20 18 23 23 C 1.54893 * 102.74853 * 203.37423 * 22 21 20 24 24 C 1.54272 * 104.19131 * 37.94118 * 23 22 21 25 25 C 1.53866 * 106.59956 * 336.39157 * 24 23 22 26 26 C 1.46923 * 118.73528 * 306.64582 * 17 16 15 27 27 C 1.52758 * 109.01091 * 53.30713 * 26 17 16 28 28 H 1.09000 * 109.47815 * 300.00284 * 1 2 3 29 29 H 1.09006 * 109.47096 * 60.00008 * 1 2 3 30 30 H 1.09003 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46706 * 59.99767 * 3 2 1 32 32 H 1.08992 * 109.47292 * 300.00230 * 3 2 1 33 33 H 1.08999 * 109.47168 * 305.00089 * 4 3 2 34 34 H 1.09003 * 109.47376 * 185.00330 * 4 3 2 35 35 H 0.97000 * 119.99419 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.45495 * 4.74634 * 14 5 4 37 37 H 1.09003 * 109.50215 * 58.67732 * 15 14 5 38 38 H 1.09000 * 109.52589 * 298.59739 * 15 14 5 39 39 H 1.09003 * 109.58382 * 294.84449 * 16 15 14 40 40 H 1.09002 * 109.70195 * 174.49668 * 16 15 14 41 41 H 1.09004 * 109.46794 * 60.00505 * 20 18 17 42 42 H 1.09004 * 109.47511 * 300.00392 * 20 18 17 43 43 H 1.09008 * 110.53387 * 52.38828 * 21 20 18 44 44 H 1.09008 * 110.75718 * 85.06295 * 22 21 20 45 45 H 1.08993 * 110.75898 * 321.69232 * 22 21 20 46 46 H 1.08993 * 110.48550 * 279.26542 * 23 22 21 47 47 H 1.09000 * 110.48653 * 156.61699 * 23 22 21 48 48 H 1.09004 * 110.02800 * 95.67566 * 24 23 22 49 49 H 1.08998 * 110.02990 * 217.10204 * 24 23 22 50 50 H 1.08997 * 110.03433 * 119.28746 * 25 24 23 51 51 H 1.09000 * 110.03038 * 240.66454 * 25 24 23 52 52 H 1.09004 * 109.58234 * 173.13930 * 26 17 16 53 53 H 1.09000 * 109.58682 * 293.56522 * 26 17 16 54 54 H 1.09006 * 109.56520 * 185.54652 * 27 26 17 55 55 H 1.09003 * 109.38455 * 65.51482 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0978 -0.7975 -1.3345 7 1 3.8136 -1.3102 -2.2415 8 6 4.5858 -1.5186 -0.2533 9 7 5.3000 -0.9142 0.6724 10 14 4.2288 -3.3467 -0.1124 11 1 5.3031 -4.1146 -0.7917 12 1 4.1757 -3.7316 1.3209 13 1 2.9239 -3.6472 -0.7543 14 6 4.2883 1.3998 -2.4130 15 6 3.2938 1.1012 -3.5372 16 6 3.6014 2.0012 -4.7381 17 7 5.0101 1.8217 -5.1151 18 6 5.3470 1.5025 -6.3805 19 8 4.4838 1.3613 -7.2205 20 6 6.7963 1.3212 -6.7514 21 6 6.9023 0.9663 -8.2358 22 6 6.3647 -0.4637 -8.4910 23 6 7.0772 -0.8671 -9.8059 24 6 8.4921 -0.2679 -9.6686 25 6 8.3809 0.8978 -8.6704 26 6 6.0440 1.9906 -4.0850 27 6 5.7094 1.0962 -2.8927 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8507 0.5685 0.8427 34 1 3.9785 2.1765 0.0903 35 1 5.6406 -1.4180 1.4280 36 1 4.2160 2.4510 -2.1339 37 1 2.2799 1.2954 -3.1873 38 1 3.3822 0.0560 -3.8337 39 1 3.4250 3.0426 -4.4689 40 1 2.9609 1.7271 -5.5764 41 1 7.2265 0.5176 -6.1537 42 1 7.3390 2.2470 -6.5599 43 1 6.3597 1.6917 -8.8421 44 1 5.2831 -0.4515 -8.6258 45 1 6.6462 -1.1330 -7.6781 46 1 6.5629 -0.4379 -10.6656 47 1 7.1294 -1.9523 -9.8940 48 1 9.1813 -1.0214 -9.2874 49 1 8.8373 0.0997 -10.6350 50 1 9.0161 0.7100 -7.8048 51 1 8.6729 1.8309 -9.1521 52 1 7.0147 1.7070 -4.4917 53 1 6.0709 3.0311 -3.7615 54 1 6.4150 1.2868 -2.0840 55 1 5.7759 0.0509 -3.1947 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723648574.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:09 Heat of formation + Delta-G solvation = -93.716195 kcal Electronic energy + Delta-G solvation = -31381.373378 eV Core-core repulsion = 27417.491853 eV Total energy + Delta-G solvation = -3963.881525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.27959 -39.45446 -38.71208 -38.10107 -36.47372 -33.84530 -32.91912 -32.14039 -31.59540 -29.75413 -29.49886 -27.22560 -27.11966 -26.08350 -24.56577 -23.93502 -22.38671 -21.67762 -21.28413 -20.63942 -19.86563 -18.39738 -17.85211 -17.27742 -17.11710 -16.69487 -16.53040 -16.42733 -16.17898 -15.68795 -15.60232 -15.46346 -15.17348 -14.90165 -14.85629 -14.33449 -14.12483 -14.01966 -13.61733 -13.41620 -13.34485 -13.13578 -12.90795 -12.83952 -12.72989 -12.54976 -12.36123 -12.24298 -12.20830 -12.02176 -11.89404 -11.84167 -11.77800 -11.62326 -11.51415 -11.46789 -11.45358 -11.19874 -11.09643 -10.62609 -10.38679 -10.29901 -9.55280 -8.40544 -7.70082 -5.28075 1.42943 1.47505 1.56404 1.70978 2.13010 2.58355 3.22383 3.40611 3.52873 3.64868 3.72222 3.82272 3.91361 4.03628 4.21067 4.29305 4.35769 4.38662 4.42665 4.45704 4.48564 4.53156 4.61277 4.61923 4.63335 4.67410 4.73360 4.76961 4.81839 4.84524 4.85903 4.87779 4.90812 4.93621 4.94050 4.97465 5.03947 5.12385 5.14556 5.17430 5.23714 5.28253 5.37268 5.51058 5.55037 5.57238 5.65931 5.72797 5.77575 5.88489 6.53043 6.53392 6.70238 7.26316 7.32080 8.01396 8.50450 9.25737 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.002998 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.281146 B = 9336.896965 C =10152.935463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.054 3.946 4 C 0.141 3.859 5 N -0.584 5.584 6 C -0.218 4.218 7 H 0.033 0.967 8 C -0.021 4.021 9 N -0.914 5.914 10 Si 0.932 3.068 11 H -0.289 1.289 12 H -0.295 1.295 13 H -0.285 1.285 14 C 0.173 3.827 15 C -0.125 4.125 16 C 0.121 3.879 17 N -0.609 5.609 18 C 0.508 3.492 19 O -0.585 6.585 20 C -0.128 4.128 21 C -0.073 4.073 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.116 4.116 26 C 0.116 3.884 27 C -0.123 4.123 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.246 0.754 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.030 0.970 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.075 0.925 52 H 0.104 0.896 53 H 0.090 0.910 54 H 0.061 0.939 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.907 9.297 -12.981 16.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.025 4.025 4 C 0.014 3.986 5 N -0.303 5.303 6 C -0.349 4.349 7 H 0.051 0.949 8 C -0.217 4.217 9 N -0.559 5.559 10 Si 0.763 3.237 11 H -0.216 1.216 12 H -0.221 1.221 13 H -0.211 1.211 14 C 0.067 3.933 15 C -0.165 4.165 16 C -0.002 4.002 17 N -0.342 5.342 18 C 0.298 3.702 19 O -0.466 6.466 20 C -0.168 4.168 21 C -0.092 4.092 22 C -0.160 4.160 23 C -0.162 4.162 24 C -0.160 4.160 25 C -0.154 4.154 26 C -0.007 4.007 27 C -0.163 4.163 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.138 0.862 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.094 0.906 51 H 0.094 0.906 52 H 0.122 0.878 53 H 0.108 0.892 54 H 0.080 0.920 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.658 9.003 -13.249 16.431 hybrid contribution -0.922 -1.334 0.657 1.750 sum 2.736 7.669 -12.592 14.995 Atomic orbital electron populations 1.22794 0.81824 1.02395 0.99989 1.88143 1.19371 1.28971 1.95166 1.23297 0.97091 0.83813 0.98261 1.20984 0.89396 0.96438 0.91733 1.43872 1.75665 1.02100 1.08686 1.18575 1.33688 0.83324 0.99289 0.94932 1.25377 0.97410 0.99431 0.99513 1.70036 1.36189 1.35997 1.13719 0.85839 0.77645 0.83967 0.76243 1.21617 1.22103 1.21136 1.20515 0.92095 0.93769 0.86944 1.22186 1.00001 0.98438 0.95862 1.21500 0.82196 0.99783 0.96716 1.48295 1.07891 1.68736 1.09254 1.21318 0.92706 0.74923 0.81270 1.90627 1.53061 1.52980 1.49958 1.21842 0.91579 1.05307 0.98045 1.21714 0.96905 0.96885 0.93733 1.22538 0.99308 0.96312 0.97867 1.22359 0.96314 1.00531 0.97023 1.22131 0.96400 0.97718 0.99755 1.22200 0.94513 0.99146 0.99515 1.21847 0.90985 1.00578 0.87262 1.22001 0.98376 0.98996 0.96926 0.93414 0.94053 0.90330 0.93661 0.94348 0.91665 0.92507 0.94489 0.91495 0.92161 0.95130 0.89773 0.91136 0.88040 0.86188 0.91510 0.93538 0.92510 0.91882 0.91627 0.91365 0.90950 0.90566 0.90606 0.87764 0.89193 0.92006 0.94432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.09 16 2 O -0.40 -17.13 10.18 -148.98 -1.52 -18.64 16 3 C 0.05 2.06 6.28 71.98 0.45 2.51 16 4 C 0.14 6.19 5.70 86.38 0.49 6.68 16 5 N -0.58 -26.81 2.34 -677.90 -1.59 -28.39 16 6 C -0.22 -11.59 7.60 84.03 0.64 -10.95 16 7 H 0.03 1.86 7.09 -2.91 -0.02 1.84 16 8 C -0.02 -1.14 4.97 84.86 0.42 -0.72 16 9 N -0.91 -51.95 11.47 21.65 0.25 -51.70 16 10 Si 0.93 46.33 29.60 68.60 2.03 48.36 16 11 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 12 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 13 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 14 C 0.17 6.40 2.60 45.01 0.12 6.51 16 15 C -0.12 -4.43 5.38 30.67 0.16 -4.26 16 16 C 0.12 3.59 6.43 86.36 0.56 4.15 16 17 N -0.61 -17.00 2.98 -819.74 -2.44 -19.44 16 18 C 0.51 14.60 7.51 87.66 0.66 15.26 16 19 O -0.59 -21.03 14.14 -3.02 -0.04 -21.08 16 20 C -0.13 -2.62 3.40 29.85 0.10 -2.52 16 21 C -0.07 -1.53 2.45 -9.72 -0.02 -1.55 16 22 C -0.12 -2.95 5.75 31.89 0.18 -2.76 16 23 C -0.12 -2.37 6.83 31.67 0.22 -2.16 16 24 C -0.12 -1.87 6.80 31.32 0.21 -1.66 16 25 C -0.12 -1.76 6.37 31.31 0.20 -1.56 16 26 C 0.12 2.79 6.31 86.22 0.54 3.34 16 27 C -0.12 -4.24 5.21 30.52 0.16 -4.08 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.18 8.14 -2.38 -0.02 1.17 16 30 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 3.43 5.54 -2.39 -0.01 3.41 16 34 H 0.06 2.23 7.88 -2.39 -0.02 2.21 16 35 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 36 H 0.07 2.21 7.77 -2.39 -0.02 2.19 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.03 1.29 7.24 -2.39 -0.02 1.27 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 2.29 7.00 -2.39 -0.02 2.27 16 41 H 0.10 1.98 7.56 -2.38 -0.02 1.96 16 42 H 0.12 1.75 7.95 -2.39 -0.02 1.73 16 43 H 0.07 1.58 7.90 -2.38 -0.02 1.56 16 44 H 0.05 1.37 7.29 -2.38 -0.02 1.36 16 45 H 0.06 1.41 7.97 -2.39 -0.02 1.39 16 46 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 49 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.08 1.02 7.84 -2.39 -0.02 1.00 16 51 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.10 1.98 5.93 -2.39 -0.01 1.97 16 53 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 54 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 55 H 0.04 1.54 7.61 -2.39 -0.02 1.52 16 Total: -1.00 -67.74 417.51 3.87 -63.87 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.83 Total: 18.70 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 6.34 Total: 8.32 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -3.78 Total: -99.53 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -1.56 Total: -39.72 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -67.74 3.87 -63.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723648574.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.845 kcal (2) G-P(sol) polarization free energy of solvation -67.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds