Wall clock time and date at job start Tue Mar 31 2020 22:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47379 * 2 1 4 4 C 1.42898 * 114.00275 * 184.57692 * 3 2 1 5 5 H 1.08996 * 109.46995 * 346.80471 * 4 3 2 6 6 C 1.52996 * 109.47199 * 226.80683 * 4 3 2 7 7 C 1.50699 * 109.47297 * 65.00030 * 6 4 3 8 8 O 1.21281 * 119.99925 * 359.97438 * 7 6 4 9 9 N 1.34779 * 120.00062 * 179.97438 * 7 6 4 10 10 C 1.46945 * 120.44190 * 359.97438 * 9 7 6 11 11 C 1.53591 * 108.53026 * 125.77319 * 10 9 7 12 12 H 1.09011 * 110.59652 * 172.15823 * 11 10 9 13 13 C 1.53357 * 108.69362 * 294.35643 * 11 10 9 14 14 C 1.53013 * 109.27067 * 60.29602 * 13 11 10 15 15 C 1.53009 * 109.79674 * 60.56992 * 14 13 11 16 16 C 1.53368 * 109.25479 * 299.42464 * 15 14 13 17 17 H 1.09002 * 111.08752 * 177.83161 * 16 15 14 18 18 C 1.46946 * 120.43958 * 179.97438 * 9 7 6 19 19 N 1.47569 * 107.98683 * 56.37615 * 16 15 14 20 20 C 1.36935 * 121.61247 * 122.27545 * 19 16 15 21 21 H 1.07999 * 119.99887 * 28.12920 * 20 19 16 22 22 C 1.38808 * 120.00293 * 208.13437 * 20 19 16 23 23 N 1.31624 * 119.99902 * 13.90577 * 22 20 19 24 24 Si 1.86799 * 120.00453 * 193.90804 * 22 20 19 25 25 H 1.48504 * 109.47003 * 59.99575 * 24 22 20 26 26 H 1.48496 * 109.47624 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47240 * 300.00107 * 24 22 20 28 28 C 1.53001 * 109.46840 * 106.80455 * 4 3 2 29 29 C 1.52999 * 109.46933 * 185.61901 * 28 4 3 30 30 C 1.52995 * 109.47285 * 305.61821 * 28 4 3 31 31 H 1.09002 * 109.46974 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46866 * 299.99686 * 1 2 3 33 33 H 1.09001 * 109.46683 * 60.00177 * 1 2 3 34 34 H 1.08994 * 109.47072 * 239.99842 * 2 1 3 35 35 H 1.09001 * 109.46813 * 120.00364 * 2 1 3 36 36 H 1.09004 * 109.46984 * 305.00168 * 6 4 3 37 37 H 1.09001 * 109.47293 * 184.99931 * 6 4 3 38 38 H 1.08996 * 109.62708 * 6.06016 * 10 9 7 39 39 H 1.09003 * 109.78576 * 245.57923 * 10 9 7 40 40 H 1.09002 * 109.51176 * 180.23947 * 13 11 10 41 41 H 1.08999 * 109.50392 * 300.32062 * 13 11 10 42 42 H 1.09000 * 109.41915 * 180.66615 * 14 13 11 43 43 H 1.09001 * 109.41769 * 300.53436 * 14 13 11 44 44 H 1.09003 * 109.50841 * 179.49143 * 15 14 13 45 45 H 1.09002 * 109.51121 * 59.35695 * 15 14 13 46 46 H 1.09003 * 109.62342 * 114.49492 * 18 9 7 47 47 H 1.08993 * 109.62938 * 353.93295 * 18 9 7 48 48 H 0.97005 * 119.99685 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.47058 * 65.62532 * 28 4 3 50 50 H 1.09004 * 109.47228 * 59.99970 * 29 28 4 51 51 H 1.09000 * 109.47491 * 180.02562 * 29 28 4 52 52 H 1.09001 * 109.47201 * 300.00522 * 29 28 4 53 53 H 1.08998 * 109.46849 * 66.19718 * 30 28 4 54 54 H 1.09000 * 109.47220 * 186.19517 * 30 28 4 55 55 H 1.08996 * 109.47502 * 306.19511 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4270 1.4615 -0.1042 5 1 3.8836 0.4873 0.0707 6 6 3.9364 2.4581 0.9390 7 6 3.6805 1.9138 2.3207 8 8 3.1431 0.8352 2.4577 9 7 4.0488 2.6256 3.4043 10 6 4.7010 3.9333 3.2496 11 6 3.9088 4.9725 4.0568 12 1 4.4381 5.9252 4.0795 13 6 2.5191 5.1284 3.4272 14 6 1.7932 3.7819 3.4661 15 6 1.6327 3.3214 4.9163 16 6 3.0191 3.1581 5.5515 17 1 2.9388 2.8668 6.5988 18 6 3.8034 2.1044 4.7561 19 7 3.7333 4.4431 5.4230 20 6 4.2105 5.1117 6.5186 21 1 4.4895 4.5637 7.4064 22 6 4.3355 6.4938 6.4882 23 7 3.7516 7.1866 5.5334 24 14 5.3323 7.3707 7.8023 25 1 6.7345 6.8828 7.7679 26 1 5.3112 8.8333 7.5461 27 1 4.7443 7.0930 9.1374 28 6 3.7977 1.9545 -1.5043 29 6 5.3194 1.9434 -1.6627 30 6 3.1691 1.0339 -2.5522 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 3.4141 3.4074 0.8199 37 1 5.0067 2.6125 0.8018 38 1 4.7093 4.2160 2.1970 39 1 5.7238 3.8819 3.6230 40 1 1.9462 5.8670 3.9879 41 1 2.6228 5.4568 2.3931 42 1 0.8095 3.8872 3.0084 43 1 2.3724 3.0419 2.9138 44 1 1.1072 2.3666 4.9390 45 1 1.0624 4.0647 5.4734 46 1 4.7546 1.9062 5.2503 47 1 3.2215 1.1849 4.6940 48 1 3.8393 8.1524 5.5120 49 1 3.4255 2.9697 -1.6424 50 1 5.6917 0.9283 -1.5246 51 1 5.5835 2.2951 -2.6600 52 1 5.7672 2.5993 -0.9161 53 1 2.0838 1.1256 -2.5123 54 1 3.5215 1.3181 -3.5438 55 1 3.4543 0.0020 -2.3473 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723663819.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:57 Heat of formation + Delta-G solvation = -61.931913 kcal Electronic energy + Delta-G solvation = -33172.483093 eV Core-core repulsion = 29209.979838 eV Total energy + Delta-G solvation = -3962.503255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.11453 -40.01686 -38.70478 -36.01936 -35.52249 -34.51908 -33.61262 -32.38357 -32.10550 -30.98771 -28.45143 -27.79386 -27.11695 -25.65502 -24.69195 -23.58629 -23.08817 -22.71030 -21.04389 -20.62626 -19.94558 -18.57418 -17.90104 -17.69366 -17.03689 -16.56134 -16.45423 -16.34140 -15.75048 -15.33686 -15.24166 -15.09036 -14.90236 -14.61710 -14.51807 -14.23128 -14.05009 -13.85717 -13.63180 -13.42310 -13.31958 -13.10191 -13.04236 -13.00603 -12.88671 -12.81377 -12.60014 -12.44290 -12.38403 -12.14326 -12.03224 -11.95649 -11.81287 -11.70626 -11.61615 -11.58807 -11.42219 -11.21024 -11.06018 -10.65916 -10.38694 -10.20732 -9.39346 -8.41640 -7.77822 -5.26618 1.51009 1.52392 1.58379 1.72263 2.12281 2.54839 2.85745 3.33893 3.52063 3.55019 3.80221 4.04775 4.10087 4.16498 4.17836 4.25178 4.26950 4.31362 4.33775 4.39137 4.44512 4.48883 4.52826 4.55886 4.61991 4.69833 4.74496 4.77919 4.83611 4.86481 4.87709 4.90970 4.94393 4.97770 5.05462 5.06192 5.10119 5.13047 5.16199 5.27005 5.28916 5.31675 5.36336 5.46537 5.47344 5.49397 5.58512 5.68771 5.82128 5.89606 6.45073 6.46304 6.58632 7.20116 7.27903 7.86285 8.45277 9.23817 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.003474 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.549447 B = 8058.566606 C = 8662.787308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 O -0.390 6.390 4 C 0.114 3.886 5 H 0.060 0.940 6 C -0.148 4.148 7 C 0.517 3.483 8 O -0.574 6.574 9 N -0.595 5.595 10 C 0.096 3.904 11 C 0.171 3.829 12 H 0.093 0.907 13 C -0.102 4.102 14 C -0.132 4.132 15 C -0.115 4.115 16 C 0.148 3.852 17 H 0.071 0.929 18 C 0.112 3.888 19 N -0.594 5.594 20 C -0.257 4.257 21 H 0.063 0.937 22 C -0.041 4.041 23 N -0.921 5.921 24 Si 0.963 3.037 25 H -0.279 1.279 26 H -0.296 1.296 27 H -0.285 1.285 28 C -0.108 4.108 29 C -0.148 4.148 30 C -0.142 4.142 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.054 0.946 42 H 0.029 0.971 43 H 0.096 0.904 44 H 0.054 0.946 45 H 0.029 0.971 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.249 0.751 49 H 0.076 0.924 50 H 0.056 0.944 51 H 0.070 0.930 52 H 0.063 0.937 53 H 0.051 0.949 54 H 0.068 0.932 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 -11.526 -15.785 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 O -0.310 6.310 4 C 0.056 3.944 5 H 0.078 0.922 6 C -0.187 4.187 7 C 0.308 3.692 8 O -0.455 6.455 9 N -0.327 5.327 10 C -0.028 4.028 11 C 0.065 3.935 12 H 0.111 0.889 13 C -0.141 4.141 14 C -0.170 4.170 15 C -0.154 4.154 16 C 0.040 3.960 17 H 0.090 0.910 18 C -0.012 4.012 19 N -0.315 5.315 20 C -0.388 4.388 21 H 0.080 0.920 22 C -0.237 4.237 23 N -0.567 5.567 24 Si 0.792 3.208 25 H -0.205 1.205 26 H -0.222 1.222 27 H -0.211 1.211 28 C -0.127 4.127 29 C -0.205 4.205 30 C -0.199 4.199 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.121 0.879 37 H 0.146 0.854 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.113 0.887 44 H 0.072 0.928 45 H 0.048 0.952 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.058 0.942 49 H 0.094 0.906 50 H 0.075 0.925 51 H 0.089 0.911 52 H 0.082 0.918 53 H 0.070 0.930 54 H 0.087 0.913 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.039 -11.749 -15.676 19.618 hybrid contribution 0.179 0.821 1.337 1.579 sum 1.218 -10.928 -14.339 18.070 Atomic orbital electron populations 1.21716 0.93640 1.02815 1.02100 1.22536 0.95600 0.83590 0.99796 1.87837 1.21371 1.27204 1.94585 1.21870 0.81663 0.97577 0.93303 0.92215 1.22197 1.04919 1.01446 0.90186 1.20780 0.77079 0.84172 0.87152 1.90612 1.44550 1.23146 1.87182 1.48194 1.58717 1.20016 1.05793 1.22504 0.96216 0.82427 1.01638 1.21167 0.93679 0.95940 0.82755 0.88949 1.21666 0.98180 0.95807 0.98485 1.22088 0.99199 0.98998 0.96753 1.21820 0.97755 0.98943 0.96918 1.21326 0.90427 0.87120 0.97093 0.91038 1.21943 0.99868 0.96930 0.82468 1.44569 1.63521 1.21204 1.02235 1.19371 1.35453 0.89153 0.94778 0.91965 1.25634 1.00940 0.97018 1.00067 1.70066 1.45418 1.05587 1.35603 0.85426 0.79093 0.77022 0.79261 1.20531 1.22212 1.21120 1.21511 0.97094 1.00735 0.93332 1.21897 0.93394 1.02340 1.02878 1.21773 1.00659 0.98928 0.98533 0.89658 0.93816 0.91672 0.92440 0.94430 0.87889 0.85412 0.87924 0.91771 0.95138 0.92761 0.95222 0.88658 0.92774 0.95170 0.91957 0.89954 0.94191 0.90554 0.92463 0.91085 0.91791 0.93015 0.91346 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 10.28 71.98 0.74 -2.38 16 2 C 0.06 1.49 5.72 71.98 0.41 1.90 16 3 O -0.39 -10.71 8.70 -135.19 -1.18 -11.89 16 4 C 0.11 2.63 1.39 30.59 0.04 2.67 16 5 H 0.06 1.45 7.46 -2.39 -0.02 1.43 16 6 C -0.15 -3.57 3.59 29.85 0.11 -3.47 16 7 C 0.52 16.41 4.90 87.66 0.43 16.84 16 8 O -0.57 -21.04 13.50 10.76 0.15 -20.90 16 9 N -0.59 -19.96 1.65 -817.32 -1.35 -21.30 16 10 C 0.10 3.22 5.80 86.49 0.50 3.72 16 11 C 0.17 7.36 2.65 45.11 0.12 7.48 16 12 H 0.09 4.58 5.75 -2.38 -0.01 4.56 16 13 C -0.10 -4.29 5.55 30.72 0.17 -4.12 16 14 C -0.13 -5.21 5.55 30.60 0.17 -5.04 16 15 C -0.12 -4.70 5.58 30.72 0.17 -4.53 16 16 C 0.15 6.09 3.62 45.10 0.16 6.25 16 17 H 0.07 2.95 8.01 -2.39 -0.02 2.93 16 18 C 0.11 4.05 5.88 86.48 0.51 4.56 16 19 N -0.59 -27.88 2.54 -645.73 -1.64 -29.52 16 20 C -0.26 -13.44 9.74 84.03 0.82 -12.62 16 21 H 0.06 3.22 7.87 -2.91 -0.02 3.20 16 22 C -0.04 -2.13 5.09 84.86 0.43 -1.70 16 23 N -0.92 -50.62 10.76 21.65 0.23 -50.39 16 24 Si 0.96 43.24 29.58 68.60 2.03 45.27 16 25 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 28 C -0.11 -1.88 2.69 -10.80 -0.03 -1.91 16 29 C -0.15 -2.02 8.96 71.98 0.65 -1.38 16 30 C -0.14 -2.24 7.90 71.98 0.57 -1.67 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.16 6.66 -2.39 -0.02 1.14 16 35 H 0.04 1.08 7.01 -2.39 -0.02 1.06 16 36 H 0.10 2.52 7.69 -2.39 -0.02 2.50 16 37 H 0.13 2.39 6.15 -2.39 -0.01 2.37 16 38 H 0.10 2.75 5.90 -2.39 -0.01 2.74 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.03 1.51 8.01 -2.39 -0.02 1.49 16 41 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.10 3.55 2.49 -3.47 -0.01 3.54 16 44 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 47 H 0.08 2.95 6.98 -2.39 -0.02 2.93 16 48 H 0.25 13.45 8.31 -92.70 -0.77 12.68 16 49 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 50 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 51 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.06 0.83 6.48 -2.39 -0.02 0.81 16 53 H 0.05 0.92 7.46 -2.39 -0.02 0.90 16 54 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 55 H 0.05 0.80 7.69 -2.39 -0.02 0.78 16 Total: -1.00 -62.01 398.73 5.07 -56.95 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.85 Total: 27.17 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.97 Total: 4.61 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -2.75 Total: -101.21 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.03 Total: -32.78 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -62.01 5.07 -56.95 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723663819.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.986 kcal (2) G-P(sol) polarization free energy of solvation -62.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds