Wall clock time and date at job start Tue Mar 31 2020 21:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47125 * 2 1 4 4 C 1.42904 * 114.00425 * 184.70760 * 3 2 1 5 5 H 1.09000 * 109.46554 * 329.33307 * 4 3 2 6 6 C 1.50699 * 109.47297 * 89.32540 * 4 3 2 7 7 O 1.21291 * 119.99409 * 5.00361 * 6 4 3 8 8 N 1.34767 * 120.00112 * 185.00253 * 6 4 3 9 9 C 1.48178 * 127.80505 * 359.97438 * 8 6 4 10 10 C 1.54512 * 104.64105 * 140.68525 * 9 8 6 11 11 C 1.53822 * 104.78996 * 23.76930 * 10 9 8 12 12 C 1.48263 * 127.80173 * 179.97438 * 8 6 4 13 13 C 1.52478 * 110.25542 * 118.81876 * 11 10 9 14 14 C 1.53123 * 109.63661 * 181.99185 * 13 11 10 15 15 C 1.53188 * 109.29845 * 299.52214 * 14 13 11 16 16 N 1.47191 * 108.94342 * 55.12141 * 15 14 13 17 17 C 1.36938 * 120.85400 * 125.88386 * 16 15 14 18 18 H 1.07995 * 120.00152 * 208.39318 * 17 16 15 19 19 C 1.38812 * 120.00002 * 28.39005 * 17 16 15 20 20 N 1.31621 * 119.99839 * 15.13901 * 19 17 16 21 21 Si 1.86803 * 120.00164 * 195.13962 * 19 17 16 22 22 H 1.48499 * 109.47081 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47189 * 120.00120 * 21 19 17 24 24 H 1.48500 * 109.47027 * 239.99933 * 21 19 17 25 25 C 1.47028 * 118.46406 * 306.01803 * 16 15 14 26 26 C 1.53001 * 109.47418 * 209.33048 * 4 3 2 27 27 C 1.52995 * 109.46764 * 304.30513 * 26 4 3 28 28 C 1.53002 * 109.46974 * 64.30472 * 26 4 3 29 29 H 1.08993 * 109.47018 * 59.99704 * 1 2 3 30 30 H 1.09000 * 109.46770 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46608 * 299.99811 * 1 2 3 32 32 H 1.09002 * 109.47491 * 240.00125 * 2 1 3 33 33 H 1.08999 * 109.47179 * 119.99882 * 2 1 3 34 34 H 1.08998 * 110.40415 * 21.89122 * 9 8 6 35 35 H 1.09003 * 110.50231 * 259.51732 * 9 8 6 36 36 H 1.08998 * 110.36971 * 264.93988 * 10 9 8 37 37 H 1.08998 * 110.46928 * 142.64991 * 10 9 8 38 38 H 1.08995 * 110.42645 * 100.43514 * 12 8 6 39 39 H 1.08998 * 110.42609 * 337.94474 * 12 8 6 40 40 H 1.08997 * 109.44538 * 302.04486 * 13 11 10 41 41 H 1.09005 * 109.44321 * 61.97805 * 13 11 10 42 42 H 1.09000 * 109.50250 * 59.47146 * 14 13 11 43 43 H 1.08998 * 109.49964 * 179.54025 * 14 13 11 44 44 H 1.09002 * 109.57063 * 174.92208 * 15 14 13 45 45 H 1.09005 * 109.56859 * 295.16358 * 15 14 13 46 46 H 0.97000 * 119.99690 * 180.02562 * 20 19 17 47 47 H 1.09006 * 109.57520 * 292.83018 * 25 16 15 48 48 H 1.08994 * 109.57773 * 172.57324 * 25 16 15 49 49 H 1.08999 * 109.46824 * 184.29961 * 26 4 3 50 50 H 1.08995 * 109.47455 * 59.99954 * 27 26 4 51 51 H 1.09003 * 109.47036 * 179.97438 * 27 26 4 52 52 H 1.09001 * 109.47023 * 299.99778 * 27 26 4 53 53 H 1.09002 * 109.47259 * 303.40424 * 28 26 4 54 54 H 1.09002 * 109.47385 * 63.40683 * 28 26 4 55 55 H 1.08998 * 109.46740 * 183.40779 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4268 1.4617 -0.1071 5 1 3.8971 0.5956 0.3585 6 6 3.8175 1.5241 -1.5613 7 8 2.9602 1.5670 -2.4182 8 7 5.1194 1.5323 -1.9095 9 6 6.2993 1.4864 -1.0143 10 6 7.3047 0.5647 -1.7403 11 6 6.9037 0.6373 -3.2235 12 6 5.6946 1.5892 -3.2748 13 6 8.0519 1.2003 -4.0539 14 6 7.6206 1.3128 -5.5189 15 6 7.2553 -0.0779 -6.0473 16 7 6.2308 -0.6682 -5.1707 17 6 5.0491 -1.1315 -5.6846 18 1 4.1578 -1.1307 -5.0747 19 6 4.9968 -1.6022 -6.9894 20 7 6.1101 -1.8849 -7.6321 21 14 3.3465 -1.8345 -7.8331 22 1 2.2559 -1.4478 -6.9024 23 1 3.2866 -0.9811 -9.0469 24 1 3.1850 -3.2588 -8.2211 25 6 6.5036 -0.7466 -3.7280 26 6 3.8907 2.7362 0.6008 27 6 3.1496 3.9414 0.0186 28 6 3.5902 2.6267 2.0970 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8935 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 6.0265 1.0641 -0.0472 35 1 6.7212 2.4834 -0.8873 36 1 7.2161 -0.4576 -1.3727 37 1 8.3229 0.9292 -1.6042 38 1 6.0182 2.6032 -3.5093 39 1 4.9675 1.2415 -4.0087 40 1 8.3215 2.1874 -3.6783 41 1 8.9131 0.5362 -3.9797 42 1 6.7540 1.9697 -5.5937 43 1 8.4402 1.7230 -6.1089 44 1 6.8623 0.0081 -7.0603 45 1 8.1425 -0.7112 -6.0523 46 1 6.0736 -2.2134 -8.5440 47 1 7.3164 -1.4503 -3.5478 48 1 5.6080 -1.0814 -3.2047 49 1 4.9633 2.8634 0.4541 50 1 2.0771 3.8141 0.1654 51 1 3.4798 4.8495 0.5233 52 1 3.3637 4.0194 -1.0473 53 1 2.5261 2.4390 2.2411 54 1 4.1652 1.8050 2.5240 55 1 3.8650 3.5582 2.5919 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723678055.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:46 Heat of formation + Delta-G solvation = -88.865658 kcal Electronic energy + Delta-G solvation = -32516.700017 eV Core-core repulsion = 28553.028827 eV Total energy + Delta-G solvation = -3963.671190 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.69079 -40.32234 -38.51339 -37.33443 -36.10982 -34.79139 -32.51670 -32.34930 -31.99244 -30.10004 -28.91074 -28.03786 -27.33626 -26.20903 -24.45557 -23.89095 -23.81530 -22.12400 -21.49694 -20.51558 -19.58666 -18.60929 -18.27149 -17.80270 -16.98895 -16.89879 -16.63991 -16.25680 -15.83482 -15.61579 -15.51280 -15.31135 -14.91091 -14.70923 -14.61027 -14.40881 -13.98930 -13.82554 -13.57677 -13.49386 -13.32595 -13.29207 -13.09119 -12.94777 -12.92595 -12.88708 -12.78710 -12.54736 -12.44121 -12.33832 -12.12897 -12.07434 -11.93493 -11.80644 -11.69898 -11.62284 -11.46524 -11.36292 -11.08694 -10.98926 -10.57742 -10.26378 -9.69776 -8.68390 -7.92751 -5.37679 1.34362 1.37068 1.48480 1.57735 1.88915 2.43487 2.65580 3.20521 3.38217 3.62866 3.70360 3.72103 3.81261 3.89719 3.92088 4.10088 4.13181 4.24301 4.30930 4.33802 4.36494 4.40941 4.41151 4.48419 4.57739 4.66065 4.73672 4.77568 4.83423 4.84995 4.88147 4.92953 4.95610 4.97328 4.98699 5.05065 5.06632 5.11151 5.13702 5.14987 5.17267 5.19917 5.38604 5.40831 5.42310 5.49947 5.53144 5.54387 5.65079 5.78575 6.04569 6.35054 6.62633 7.11375 7.17336 7.83077 8.32352 9.11890 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011326 B = 0.004101 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.621942 B = 6826.340075 C = 8575.544121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.367 6.367 4 C 0.088 3.912 5 H 0.106 0.894 6 C 0.499 3.501 7 O -0.588 6.588 8 N -0.620 5.620 9 C 0.096 3.904 10 C -0.118 4.118 11 C -0.078 4.078 12 C 0.126 3.874 13 C -0.085 4.085 14 C -0.137 4.137 15 C 0.174 3.826 16 N -0.606 5.606 17 C -0.252 4.252 18 H 0.041 0.959 19 C -0.042 4.042 20 N -0.927 5.927 21 Si 0.954 3.046 22 H -0.284 1.284 23 H -0.285 1.285 24 H -0.283 1.283 25 C 0.164 3.836 26 C -0.082 4.082 27 C -0.141 4.141 28 C -0.138 4.138 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.020 0.980 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.001 0.999 46 H 0.251 0.749 47 H 0.020 0.980 48 H 0.025 0.975 49 H 0.108 0.892 50 H 0.049 0.951 51 H 0.079 0.921 52 H 0.022 0.978 53 H 0.052 0.948 54 H 0.072 0.928 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 9.868 23.721 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 O -0.285 6.285 4 C 0.026 3.974 5 H 0.124 0.876 6 C 0.288 3.712 7 O -0.468 6.468 8 N -0.355 5.355 9 C -0.025 4.025 10 C -0.156 4.156 11 C -0.081 4.081 12 C 0.003 3.997 13 C -0.123 4.123 14 C -0.176 4.176 15 C 0.049 3.951 16 N -0.329 5.329 17 C -0.383 4.383 18 H 0.059 0.941 19 C -0.238 4.238 20 N -0.574 5.574 21 Si 0.783 3.217 22 H -0.209 1.209 23 H -0.211 1.211 24 H -0.210 1.210 25 C 0.038 3.962 26 C -0.101 4.101 27 C -0.198 4.198 28 C -0.195 4.195 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.038 0.962 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.019 0.981 46 H 0.060 0.940 47 H 0.038 0.962 48 H 0.044 0.956 49 H 0.126 0.874 50 H 0.068 0.932 51 H 0.098 0.902 52 H 0.042 0.958 53 H 0.071 0.929 54 H 0.091 0.909 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.121 9.968 23.178 25.320 hybrid contribution -1.147 -0.905 -1.832 2.343 sum 0.974 9.063 21.346 23.211 Atomic orbital electron populations 1.21705 0.92605 1.03254 1.02589 1.22702 0.96891 0.83136 0.99912 1.87950 1.19743 1.27482 1.93335 1.22201 0.83558 1.02371 0.89224 0.87649 1.21841 0.80752 0.75462 0.93109 1.90717 1.50383 1.51837 1.53848 1.49245 1.05207 1.71700 1.09328 1.22845 0.84003 1.01694 0.93936 1.22600 1.00685 1.00808 0.91519 1.21481 0.94647 0.95216 0.96726 1.22172 0.94704 0.98797 0.84026 1.21376 0.96119 1.01492 0.93289 1.22080 1.00060 0.97614 0.97838 1.20675 0.89456 0.90580 0.94431 1.44287 1.16756 1.69433 1.02446 1.19229 0.87313 1.34529 0.97208 0.94087 1.25586 0.99403 0.99323 0.99471 1.70136 1.26563 1.48658 1.12027 0.85414 0.80544 0.77393 0.78387 1.20917 1.21097 1.20951 1.20927 0.96599 0.94336 0.84295 1.21345 1.01161 0.90867 0.96703 1.21709 1.00791 0.98237 0.99091 1.21767 1.02279 1.03347 0.92136 0.93999 0.89381 0.90462 0.96163 0.90347 0.87796 0.87963 0.90788 0.86788 0.90863 0.94477 0.89294 0.91217 0.94019 0.90893 0.93387 0.98095 0.93981 0.96226 0.95589 0.87423 0.93172 0.90184 0.95846 0.92863 0.90866 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 10.28 71.98 0.74 -2.38 16 2 C 0.05 1.24 6.44 71.98 0.46 1.70 16 3 O -0.37 -10.19 8.13 -129.99 -1.06 -11.25 16 4 C 0.09 2.10 1.50 29.85 0.04 2.15 16 5 H 0.11 1.97 7.42 -2.39 -0.02 1.95 16 6 C 0.50 16.97 6.15 87.66 0.54 17.51 16 7 O -0.59 -27.53 16.78 15.93 0.27 -27.26 16 8 N -0.62 -18.16 3.32 -808.16 -2.68 -20.84 16 9 C 0.10 1.63 5.34 86.57 0.46 2.09 16 10 C -0.12 -2.28 6.29 31.39 0.20 -2.08 16 11 C -0.08 -2.39 0.68 -51.87 -0.04 -2.43 16 12 C 0.13 4.40 4.99 86.37 0.43 4.83 16 13 C -0.09 -2.38 4.34 30.46 0.13 -2.25 16 14 C -0.14 -5.00 5.89 30.70 0.18 -4.82 16 15 C 0.17 8.51 5.31 86.31 0.46 8.97 16 16 N -0.61 -31.66 2.52 -699.22 -1.76 -33.42 16 17 C -0.25 -15.07 9.60 84.03 0.81 -14.26 16 18 H 0.04 2.59 7.87 -2.91 -0.02 2.57 16 19 C -0.04 -2.50 4.97 84.86 0.42 -2.08 16 20 N -0.93 -56.65 11.10 21.65 0.24 -56.41 16 21 Si 0.95 48.84 29.58 68.60 2.03 50.87 16 22 H -0.28 -14.71 7.11 99.48 0.71 -14.00 16 23 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 25 C 0.16 6.93 4.89 86.16 0.42 7.35 16 26 C -0.08 -1.40 2.60 -10.79 -0.03 -1.43 16 27 C -0.14 -3.01 8.81 71.98 0.63 -2.37 16 28 C -0.14 -1.63 9.12 71.98 0.66 -0.97 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.02 0.62 8.11 -2.39 -0.02 0.60 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.10 1.17 6.78 -2.39 -0.02 1.16 16 35 H 0.10 1.19 8.02 -2.39 -0.02 1.17 16 36 H 0.07 1.46 7.70 -2.39 -0.02 1.45 16 37 H 0.11 1.49 7.70 -2.39 -0.02 1.47 16 38 H 0.07 2.33 7.70 -2.39 -0.02 2.31 16 39 H 0.04 1.77 7.23 -2.39 -0.02 1.75 16 40 H 0.09 1.86 8.13 -2.39 -0.02 1.85 16 41 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.04 1.62 7.21 -2.39 -0.02 1.61 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.05 2.72 6.01 -2.39 -0.01 2.70 16 45 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 46 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 47 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.03 1.18 7.93 -2.39 -0.02 1.16 16 49 H 0.11 1.37 5.93 -2.39 -0.01 1.36 16 50 H 0.05 1.22 7.57 -2.39 -0.02 1.21 16 51 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.02 0.63 7.36 -2.39 -0.02 0.61 16 53 H 0.05 0.78 7.71 -2.39 -0.02 0.76 16 54 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 55 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -81.63 414.23 4.40 -77.23 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.83 Total: 11.56 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 6.53 Total: 9.52 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -4.20 Total: -110.68 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -0.79 Total: -38.51 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.87 kcal Total: -81.63 4.40 -77.23 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723678055.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.633 kcal (2) G-P(sol) polarization free energy of solvation -81.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds