Wall clock time and date at job start Tue Mar 31 2020 21:54:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 O 1.42898 * 109.47125 * 2 1
4 4 C 1.42904 * 114.00425 * 184.70760 * 3 2 1
5 5 H 1.09000 * 109.46554 * 329.33307 * 4 3 2
6 6 C 1.50699 * 109.47297 * 89.32540 * 4 3 2
7 7 O 1.21291 * 119.99409 * 5.00361 * 6 4 3
8 8 N 1.34767 * 120.00112 * 185.00253 * 6 4 3
9 9 C 1.48178 * 127.80505 * 359.97438 * 8 6 4
10 10 C 1.54512 * 104.64105 * 140.68525 * 9 8 6
11 11 C 1.53822 * 104.78996 * 23.76930 * 10 9 8
12 12 C 1.48263 * 127.80173 * 179.97438 * 8 6 4
13 13 C 1.52478 * 110.25542 * 118.81876 * 11 10 9
14 14 C 1.53123 * 109.63661 * 181.99185 * 13 11 10
15 15 C 1.53188 * 109.29845 * 299.52214 * 14 13 11
16 16 N 1.47191 * 108.94342 * 55.12141 * 15 14 13
17 17 C 1.36938 * 120.85400 * 125.88386 * 16 15 14
18 18 H 1.07995 * 120.00152 * 208.39318 * 17 16 15
19 19 C 1.38812 * 120.00002 * 28.39005 * 17 16 15
20 20 N 1.31621 * 119.99839 * 15.13901 * 19 17 16
21 21 Si 1.86803 * 120.00164 * 195.13962 * 19 17 16
22 22 H 1.48499 * 109.47081 * 0.02562 * 21 19 17
23 23 H 1.48500 * 109.47189 * 120.00120 * 21 19 17
24 24 H 1.48500 * 109.47027 * 239.99933 * 21 19 17
25 25 C 1.47028 * 118.46406 * 306.01803 * 16 15 14
26 26 C 1.53001 * 109.47418 * 209.33048 * 4 3 2
27 27 C 1.52995 * 109.46764 * 304.30513 * 26 4 3
28 28 C 1.53002 * 109.46974 * 64.30472 * 26 4 3
29 29 H 1.08993 * 109.47018 * 59.99704 * 1 2 3
30 30 H 1.09000 * 109.46770 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.46608 * 299.99811 * 1 2 3
32 32 H 1.09002 * 109.47491 * 240.00125 * 2 1 3
33 33 H 1.08999 * 109.47179 * 119.99882 * 2 1 3
34 34 H 1.08998 * 110.40415 * 21.89122 * 9 8 6
35 35 H 1.09003 * 110.50231 * 259.51732 * 9 8 6
36 36 H 1.08998 * 110.36971 * 264.93988 * 10 9 8
37 37 H 1.08998 * 110.46928 * 142.64991 * 10 9 8
38 38 H 1.08995 * 110.42645 * 100.43514 * 12 8 6
39 39 H 1.08998 * 110.42609 * 337.94474 * 12 8 6
40 40 H 1.08997 * 109.44538 * 302.04486 * 13 11 10
41 41 H 1.09005 * 109.44321 * 61.97805 * 13 11 10
42 42 H 1.09000 * 109.50250 * 59.47146 * 14 13 11
43 43 H 1.08998 * 109.49964 * 179.54025 * 14 13 11
44 44 H 1.09002 * 109.57063 * 174.92208 * 15 14 13
45 45 H 1.09005 * 109.56859 * 295.16358 * 15 14 13
46 46 H 0.97000 * 119.99690 * 180.02562 * 20 19 17
47 47 H 1.09006 * 109.57520 * 292.83018 * 25 16 15
48 48 H 1.08994 * 109.57773 * 172.57324 * 25 16 15
49 49 H 1.08999 * 109.46824 * 184.29961 * 26 4 3
50 50 H 1.08995 * 109.47455 * 59.99954 * 27 26 4
51 51 H 1.09003 * 109.47036 * 179.97438 * 27 26 4
52 52 H 1.09001 * 109.47023 * 299.99778 * 27 26 4
53 53 H 1.09002 * 109.47259 * 303.40424 * 28 26 4
54 54 H 1.09002 * 109.47385 * 63.40683 * 28 26 4
55 55 H 1.08998 * 109.46740 * 183.40779 * 28 26 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.4268 1.4617 -0.1071
5 1 3.8971 0.5956 0.3585
6 6 3.8175 1.5241 -1.5613
7 8 2.9602 1.5670 -2.4182
8 7 5.1194 1.5323 -1.9095
9 6 6.2993 1.4864 -1.0143
10 6 7.3047 0.5647 -1.7403
11 6 6.9037 0.6373 -3.2235
12 6 5.6946 1.5892 -3.2748
13 6 8.0519 1.2003 -4.0539
14 6 7.6206 1.3128 -5.5189
15 6 7.2553 -0.0779 -6.0473
16 7 6.2308 -0.6682 -5.1707
17 6 5.0491 -1.1315 -5.6846
18 1 4.1578 -1.1307 -5.0747
19 6 4.9968 -1.6022 -6.9894
20 7 6.1101 -1.8849 -7.6321
21 14 3.3465 -1.8345 -7.8331
22 1 2.2559 -1.4478 -6.9024
23 1 3.2866 -0.9811 -9.0469
24 1 3.1850 -3.2588 -8.2211
25 6 6.5036 -0.7466 -3.7280
26 6 3.8907 2.7362 0.6008
27 6 3.1496 3.9414 0.0186
28 6 3.5902 2.6267 2.0970
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3632 0.5138 0.8900
32 1 1.8935 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 6.0265 1.0641 -0.0472
35 1 6.7212 2.4834 -0.8873
36 1 7.2161 -0.4576 -1.3727
37 1 8.3229 0.9292 -1.6042
38 1 6.0182 2.6032 -3.5093
39 1 4.9675 1.2415 -4.0087
40 1 8.3215 2.1874 -3.6783
41 1 8.9131 0.5362 -3.9797
42 1 6.7540 1.9697 -5.5937
43 1 8.4402 1.7230 -6.1089
44 1 6.8623 0.0081 -7.0603
45 1 8.1425 -0.7112 -6.0523
46 1 6.0736 -2.2134 -8.5440
47 1 7.3164 -1.4503 -3.5478
48 1 5.6080 -1.0814 -3.2047
49 1 4.9633 2.8634 0.4541
50 1 2.0771 3.8141 0.1654
51 1 3.4798 4.8495 0.5233
52 1 3.3637 4.0194 -1.0473
53 1 2.5261 2.4390 2.2411
54 1 4.1652 1.8050 2.5240
55 1 3.8650 3.5582 2.5919
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001723678055.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:54:46
Heat of formation + Delta-G solvation = -88.865658 kcal
Electronic energy + Delta-G solvation = -32516.700017 eV
Core-core repulsion = 28553.028827 eV
Total energy + Delta-G solvation = -3963.671190 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.69079 -40.32234 -38.51339 -37.33443 -36.10982 -34.79139 -32.51670 -32.34930
-31.99244 -30.10004 -28.91074 -28.03786 -27.33626 -26.20903 -24.45557 -23.89095
-23.81530 -22.12400 -21.49694 -20.51558 -19.58666 -18.60929 -18.27149 -17.80270
-16.98895 -16.89879 -16.63991 -16.25680 -15.83482 -15.61579 -15.51280 -15.31135
-14.91091 -14.70923 -14.61027 -14.40881 -13.98930 -13.82554 -13.57677 -13.49386
-13.32595 -13.29207 -13.09119 -12.94777 -12.92595 -12.88708 -12.78710 -12.54736
-12.44121 -12.33832 -12.12897 -12.07434 -11.93493 -11.80644 -11.69898 -11.62284
-11.46524 -11.36292 -11.08694 -10.98926 -10.57742 -10.26378 -9.69776 -8.68390
-7.92751 -5.37679 1.34362 1.37068 1.48480 1.57735 1.88915 2.43487
2.65580 3.20521 3.38217 3.62866 3.70360 3.72103 3.81261 3.89719
3.92088 4.10088 4.13181 4.24301 4.30930 4.33802 4.36494 4.40941
4.41151 4.48419 4.57739 4.66065 4.73672 4.77568 4.83423 4.84995
4.88147 4.92953 4.95610 4.97328 4.98699 5.05065 5.06632 5.11151
5.13702 5.14987 5.17267 5.19917 5.38604 5.40831 5.42310 5.49947
5.53144 5.54387 5.65079 5.78575 6.04569 6.35054 6.62633 7.11375
7.17336 7.83077 8.32352 9.11890
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.011326 B = 0.004101 C = 0.003264
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2471.621942 B = 6826.340075 C = 8575.544121
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.050 3.950
3 O -0.367 6.367
4 C 0.088 3.912
5 H 0.106 0.894
6 C 0.499 3.501
7 O -0.588 6.588
8 N -0.620 5.620
9 C 0.096 3.904
10 C -0.118 4.118
11 C -0.078 4.078
12 C 0.126 3.874
13 C -0.085 4.085
14 C -0.137 4.137
15 C 0.174 3.826
16 N -0.606 5.606
17 C -0.252 4.252
18 H 0.041 0.959
19 C -0.042 4.042
20 N -0.927 5.927
21 Si 0.954 3.046
22 H -0.284 1.284
23 H -0.285 1.285
24 H -0.283 1.283
25 C 0.164 3.836
26 C -0.082 4.082
27 C -0.141 4.141
28 C -0.138 4.138
29 H 0.041 0.959
30 H 0.087 0.913
31 H 0.076 0.924
32 H 0.020 0.980
33 H 0.078 0.922
34 H 0.104 0.896
35 H 0.102 0.898
36 H 0.073 0.927
37 H 0.114 0.886
38 H 0.073 0.927
39 H 0.036 0.964
40 H 0.089 0.911
41 H 0.069 0.931
42 H 0.041 0.959
43 H 0.073 0.927
44 H 0.048 0.952
45 H 0.001 0.999
46 H 0.251 0.749
47 H 0.020 0.980
48 H 0.025 0.975
49 H 0.108 0.892
50 H 0.049 0.951
51 H 0.079 0.921
52 H 0.022 0.978
53 H 0.052 0.948
54 H 0.072 0.928
55 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.840 9.868 23.721 25.848
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.026 4.026
3 O -0.285 6.285
4 C 0.026 3.974
5 H 0.124 0.876
6 C 0.288 3.712
7 O -0.468 6.468
8 N -0.355 5.355
9 C -0.025 4.025
10 C -0.156 4.156
11 C -0.081 4.081
12 C 0.003 3.997
13 C -0.123 4.123
14 C -0.176 4.176
15 C 0.049 3.951
16 N -0.329 5.329
17 C -0.383 4.383
18 H 0.059 0.941
19 C -0.238 4.238
20 N -0.574 5.574
21 Si 0.783 3.217
22 H -0.209 1.209
23 H -0.211 1.211
24 H -0.210 1.210
25 C 0.038 3.962
26 C -0.101 4.101
27 C -0.198 4.198
28 C -0.195 4.195
29 H 0.060 0.940
30 H 0.106 0.894
31 H 0.095 0.905
32 H 0.038 0.962
33 H 0.097 0.903
34 H 0.122 0.878
35 H 0.120 0.880
36 H 0.092 0.908
37 H 0.132 0.868
38 H 0.091 0.909
39 H 0.055 0.945
40 H 0.107 0.893
41 H 0.088 0.912
42 H 0.060 0.940
43 H 0.091 0.909
44 H 0.066 0.934
45 H 0.019 0.981
46 H 0.060 0.940
47 H 0.038 0.962
48 H 0.044 0.956
49 H 0.126 0.874
50 H 0.068 0.932
51 H 0.098 0.902
52 H 0.042 0.958
53 H 0.071 0.929
54 H 0.091 0.909
55 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 2.121 9.968 23.178 25.320
hybrid contribution -1.147 -0.905 -1.832 2.343
sum 0.974 9.063 21.346 23.211
Atomic orbital electron populations
1.21705 0.92605 1.03254 1.02589 1.22702 0.96891 0.83136 0.99912
1.87950 1.19743 1.27482 1.93335 1.22201 0.83558 1.02371 0.89224
0.87649 1.21841 0.80752 0.75462 0.93109 1.90717 1.50383 1.51837
1.53848 1.49245 1.05207 1.71700 1.09328 1.22845 0.84003 1.01694
0.93936 1.22600 1.00685 1.00808 0.91519 1.21481 0.94647 0.95216
0.96726 1.22172 0.94704 0.98797 0.84026 1.21376 0.96119 1.01492
0.93289 1.22080 1.00060 0.97614 0.97838 1.20675 0.89456 0.90580
0.94431 1.44287 1.16756 1.69433 1.02446 1.19229 0.87313 1.34529
0.97208 0.94087 1.25586 0.99403 0.99323 0.99471 1.70136 1.26563
1.48658 1.12027 0.85414 0.80544 0.77393 0.78387 1.20917 1.21097
1.20951 1.20927 0.96599 0.94336 0.84295 1.21345 1.01161 0.90867
0.96703 1.21709 1.00791 0.98237 0.99091 1.21767 1.02279 1.03347
0.92136 0.93999 0.89381 0.90462 0.96163 0.90347 0.87796 0.87963
0.90788 0.86788 0.90863 0.94477 0.89294 0.91217 0.94019 0.90893
0.93387 0.98095 0.93981 0.96226 0.95589 0.87423 0.93172 0.90184
0.95846 0.92863 0.90866 0.90569
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.12 10.28 71.98 0.74 -2.38 16
2 C 0.05 1.24 6.44 71.98 0.46 1.70 16
3 O -0.37 -10.19 8.13 -129.99 -1.06 -11.25 16
4 C 0.09 2.10 1.50 29.85 0.04 2.15 16
5 H 0.11 1.97 7.42 -2.39 -0.02 1.95 16
6 C 0.50 16.97 6.15 87.66 0.54 17.51 16
7 O -0.59 -27.53 16.78 15.93 0.27 -27.26 16
8 N -0.62 -18.16 3.32 -808.16 -2.68 -20.84 16
9 C 0.10 1.63 5.34 86.57 0.46 2.09 16
10 C -0.12 -2.28 6.29 31.39 0.20 -2.08 16
11 C -0.08 -2.39 0.68 -51.87 -0.04 -2.43 16
12 C 0.13 4.40 4.99 86.37 0.43 4.83 16
13 C -0.09 -2.38 4.34 30.46 0.13 -2.25 16
14 C -0.14 -5.00 5.89 30.70 0.18 -4.82 16
15 C 0.17 8.51 5.31 86.31 0.46 8.97 16
16 N -0.61 -31.66 2.52 -699.22 -1.76 -33.42 16
17 C -0.25 -15.07 9.60 84.03 0.81 -14.26 16
18 H 0.04 2.59 7.87 -2.91 -0.02 2.57 16
19 C -0.04 -2.50 4.97 84.86 0.42 -2.08 16
20 N -0.93 -56.65 11.10 21.65 0.24 -56.41 16
21 Si 0.95 48.84 29.58 68.60 2.03 50.87 16
22 H -0.28 -14.71 7.11 99.48 0.71 -14.00 16
23 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16
24 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16
25 C 0.16 6.93 4.89 86.16 0.42 7.35 16
26 C -0.08 -1.40 2.60 -10.79 -0.03 -1.43 16
27 C -0.14 -3.01 8.81 71.98 0.63 -2.37 16
28 C -0.14 -1.63 9.12 71.98 0.66 -0.97 16
29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16
30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16
31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
32 H 0.02 0.62 8.11 -2.39 -0.02 0.60 16
33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16
34 H 0.10 1.17 6.78 -2.39 -0.02 1.16 16
35 H 0.10 1.19 8.02 -2.39 -0.02 1.17 16
36 H 0.07 1.46 7.70 -2.39 -0.02 1.45 16
37 H 0.11 1.49 7.70 -2.39 -0.02 1.47 16
38 H 0.07 2.33 7.70 -2.39 -0.02 2.31 16
39 H 0.04 1.77 7.23 -2.39 -0.02 1.75 16
40 H 0.09 1.86 8.13 -2.39 -0.02 1.85 16
41 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16
42 H 0.04 1.62 7.21 -2.39 -0.02 1.61 16
43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16
44 H 0.05 2.72 6.01 -2.39 -0.01 2.70 16
45 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16
46 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16
47 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16
48 H 0.03 1.18 7.93 -2.39 -0.02 1.16 16
49 H 0.11 1.37 5.93 -2.39 -0.01 1.36 16
50 H 0.05 1.22 7.57 -2.39 -0.02 1.21 16
51 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
52 H 0.02 0.63 7.36 -2.39 -0.02 0.61 16
53 H 0.05 0.78 7.71 -2.39 -0.02 0.76 16
54 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
55 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16
Total: -1.00 -81.63 414.23 4.40 -77.23
By element:
Atomic # 1 Polarization: 10.73 SS G_CDS: 0.83 Total: 11.56 kcal
Atomic # 6 Polarization: 2.99 SS G_CDS: 6.53 Total: 9.52 kcal
Atomic # 7 Polarization: -106.47 SS G_CDS: -4.20 Total: -110.68 kcal
Atomic # 8 Polarization: -37.72 SS G_CDS: -0.79 Total: -38.51 kcal
Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.87 kcal
Total: -81.63 4.40 -77.23 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001723678055.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.633 kcal
(2) G-P(sol) polarization free energy of solvation -81.631 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.263 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.866 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds