Wall clock time and date at job start Tue Mar 31 2020 21:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46854 * 2 1 4 4 C 1.42903 * 113.99974 * 175.05657 * 3 2 1 5 5 H 1.08999 * 109.46732 * 348.85384 * 4 3 2 6 6 C 1.50694 * 109.47144 * 228.85376 * 4 3 2 7 7 O 1.21281 * 119.99890 * 342.39725 * 6 4 3 8 8 N 1.34778 * 119.99883 * 162.39191 * 6 4 3 9 9 C 1.47478 * 125.66367 * 4.23229 * 8 6 4 10 10 C 1.55240 * 104.79451 * 155.92589 * 9 8 6 11 11 C 1.54515 * 101.43863 * 36.65848 * 10 9 8 12 12 C 1.47180 * 125.66092 * 184.52855 * 8 6 4 13 13 C 1.52272 * 110.19884 * 83.42679 * 11 10 9 14 14 C 1.53323 * 109.41732 * 182.19420 * 13 11 10 15 15 N 1.46916 * 108.70965 * 306.49346 * 14 13 11 16 16 C 1.36934 * 120.56652 * 234.21008 * 15 14 13 17 17 H 1.07997 * 120.00534 * 151.71576 * 16 15 14 18 18 C 1.38814 * 120.00029 * 331.71500 * 16 15 14 19 19 N 1.31619 * 119.99843 * 334.37031 * 18 16 15 20 20 Si 1.86800 * 120.00256 * 154.36656 * 18 16 15 21 21 H 1.48493 * 109.46834 * 94.99048 * 20 18 16 22 22 H 1.48507 * 109.46977 * 214.99049 * 20 18 16 23 23 H 1.48502 * 109.46872 * 334.98982 * 20 18 16 24 24 C 1.46937 * 118.87502 * 54.23361 * 15 14 13 25 25 C 1.52278 * 110.20944 * 206.61112 * 11 10 9 26 26 C 1.53000 * 109.47535 * 108.85021 * 4 3 2 27 27 C 1.53003 * 109.47229 * 294.52525 * 26 4 3 28 28 C 1.53002 * 109.46826 * 54.52125 * 26 4 3 29 29 H 1.09003 * 109.47403 * 60.00522 * 1 2 3 30 30 H 1.09003 * 109.47430 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47299 * 300.00236 * 1 2 3 32 32 H 1.08995 * 109.47239 * 239.99697 * 2 1 3 33 33 H 1.09002 * 109.46986 * 119.99811 * 2 1 3 34 34 H 1.09000 * 110.35027 * 274.86859 * 9 8 6 35 35 H 1.08996 * 110.35311 * 37.15581 * 9 8 6 36 36 H 1.09004 * 111.20097 * 278.56568 * 10 9 8 37 37 H 1.08997 * 110.94598 * 154.64970 * 10 9 8 38 38 H 1.08997 * 109.90841 * 300.84847 * 12 8 6 39 39 H 1.09004 * 109.90365 * 61.92039 * 12 8 6 40 40 H 1.08999 * 109.48525 * 302.17841 * 13 11 10 41 41 H 1.09003 * 109.48140 * 62.21488 * 13 11 10 42 42 H 1.09002 * 109.59490 * 186.72375 * 14 13 11 43 43 H 1.09005 * 109.59122 * 66.26073 * 14 13 11 44 44 H 0.97003 * 120.00437 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.60496 * 185.99175 * 24 15 14 46 46 H 1.09000 * 109.73247 * 65.59672 * 24 15 14 47 47 H 1.08998 * 109.48124 * 297.77958 * 25 11 10 48 48 H 1.09001 * 109.48093 * 57.80120 * 25 11 10 49 49 H 1.08998 * 109.47236 * 174.51986 * 26 4 3 50 50 H 1.08996 * 109.47127 * 64.38580 * 27 26 4 51 51 H 1.08996 * 109.46928 * 184.38559 * 27 26 4 52 52 H 1.08996 * 109.47142 * 304.38903 * 27 26 4 53 53 H 1.09004 * 109.47091 * 64.79919 * 28 26 4 54 54 H 1.09002 * 109.47359 * 184.80253 * 28 26 4 55 55 H 1.09004 * 109.47336 * 304.80352 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4618 0.1125 5 1 3.8493 0.4920 0.3744 6 6 3.7659 2.4642 1.1852 7 8 2.9257 3.2503 1.5686 8 7 5.0035 2.4871 1.7185 9 6 6.1410 1.6533 1.2877 10 6 7.4019 2.4460 1.7255 11 6 6.9325 3.0515 3.0674 12 6 5.4423 3.3441 2.8317 13 6 7.1095 2.0394 4.1913 14 6 6.5881 2.6381 5.5030 15 7 7.2430 3.9348 5.7224 16 6 7.9054 4.1912 6.8931 17 1 8.7317 4.8865 6.9049 18 6 7.5148 3.5575 8.0647 19 7 6.2765 3.1333 8.2021 20 14 8.7468 3.3065 9.4463 21 1 8.6260 4.4169 10.4248 22 1 8.4717 2.0153 10.1263 23 1 10.1219 3.2878 8.8860 24 6 7.1747 4.9522 4.6644 25 6 7.6926 4.3386 3.3583 26 6 4.0079 1.9278 -1.2237 27 6 3.7820 0.8471 -2.2830 28 6 3.3148 3.2207 -1.6584 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 6.1092 0.6832 1.7836 35 1 6.1300 1.5271 0.2051 36 1 7.6445 3.2290 1.0070 37 1 8.2503 1.7779 1.8735 38 1 5.3071 4.3931 2.5682 39 1 4.8688 3.1100 3.7287 40 1 6.5494 1.1342 3.9570 41 1 8.1666 1.7957 4.2979 42 1 6.8210 1.9664 6.3294 43 1 5.5094 2.7798 5.4368 44 1 6.0035 2.6901 9.0207 45 1 7.7941 5.8063 4.9378 46 1 6.1426 5.2766 4.5319 47 1 8.7556 4.1187 3.4564 48 1 7.5410 5.0429 2.5403 49 1 5.0769 2.1087 -1.1113 50 1 2.7125 0.7214 -2.4514 51 1 4.2639 1.1448 -3.2142 52 1 4.2085 -0.0947 -1.9379 53 1 3.5462 4.0138 -0.9473 54 1 3.6676 3.5068 -2.6492 55 1 2.2366 3.0628 -1.6882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723698017.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:50 Heat of formation + Delta-G solvation = -88.403133 kcal Electronic energy + Delta-G solvation = -31903.111161 eV Core-core repulsion = 27939.460028 eV Total energy + Delta-G solvation = -3963.651133 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.80582 -40.39810 -38.73302 -37.38792 -35.88599 -34.72317 -32.81991 -32.05799 -31.70451 -30.58856 -29.24832 -28.08600 -27.38782 -25.92370 -24.34155 -23.89030 -23.70453 -22.26589 -21.65631 -20.54963 -19.74729 -18.55877 -18.10040 -17.67200 -17.29274 -16.89495 -16.75910 -16.33509 -15.78181 -15.56350 -15.45535 -15.28115 -14.87276 -14.72134 -14.66027 -14.42816 -14.12870 -13.87385 -13.77830 -13.39199 -13.28069 -13.22818 -13.07130 -13.04710 -12.99923 -12.92836 -12.76737 -12.58717 -12.41127 -12.29534 -12.19007 -12.09841 -11.95229 -11.89666 -11.84137 -11.62598 -11.45598 -11.08950 -11.05515 -10.98631 -10.50920 -10.30981 -9.68873 -8.70496 -7.90882 -5.31323 1.44563 1.46915 1.50658 1.57877 1.74733 2.51154 2.80234 3.20642 3.35854 3.59625 3.65781 3.67905 3.72660 3.80385 3.86186 4.10635 4.16421 4.22715 4.24607 4.26185 4.39018 4.43797 4.46608 4.52062 4.52164 4.65109 4.69076 4.73249 4.76489 4.78796 4.82938 4.87052 4.94771 4.95326 5.00305 5.02039 5.02449 5.10197 5.14462 5.17064 5.24717 5.26639 5.34940 5.36017 5.38539 5.41592 5.44614 5.45448 5.66047 5.72191 6.11942 6.36017 6.52118 7.11335 7.12314 7.85167 8.38760 9.15191 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.002781 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.266636 B =10065.160407 C =10751.294556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.380 6.380 4 C 0.089 3.911 5 H 0.109 0.891 6 C 0.511 3.489 7 O -0.581 6.581 8 N -0.614 5.614 9 C 0.089 3.911 10 C -0.112 4.112 11 C -0.052 4.052 12 C 0.125 3.875 13 C -0.109 4.109 14 C 0.179 3.821 15 N -0.605 5.605 16 C -0.267 4.267 17 H 0.067 0.933 18 C -0.048 4.048 19 N -0.931 5.931 20 Si 0.961 3.039 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.265 1.265 24 C 0.136 3.864 25 C -0.104 4.104 26 C -0.100 4.100 27 C -0.141 4.141 28 C -0.139 4.139 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.049 0.951 39 H 0.032 0.968 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.041 0.959 43 H -0.015 1.015 44 H 0.249 0.751 45 H 0.053 0.947 46 H -0.002 1.002 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.099 0.901 50 H 0.055 0.945 51 H 0.075 0.925 52 H 0.073 0.927 53 H 0.024 0.976 54 H 0.075 0.925 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 -10.511 -25.541 27.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.298 6.298 4 C 0.028 3.972 5 H 0.127 0.873 6 C 0.300 3.700 7 O -0.460 6.460 8 N -0.348 5.348 9 C -0.032 4.032 10 C -0.149 4.149 11 C -0.053 4.053 12 C 0.002 3.998 13 C -0.148 4.148 14 C 0.053 3.947 15 N -0.329 5.329 16 C -0.397 4.397 17 H 0.084 0.916 18 C -0.244 4.244 19 N -0.577 5.577 20 Si 0.788 3.212 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.190 1.190 24 C 0.011 3.989 25 C -0.143 4.143 26 C -0.119 4.119 27 C -0.198 4.198 28 C -0.197 4.197 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.128 0.872 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.003 0.997 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.016 0.984 47 H 0.094 0.906 48 H 0.097 0.903 49 H 0.117 0.883 50 H 0.074 0.926 51 H 0.094 0.906 52 H 0.092 0.908 53 H 0.043 0.957 54 H 0.094 0.906 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.130 -10.013 -25.268 27.203 hybrid contribution -0.168 0.253 1.976 1.999 sum -1.299 -9.760 -23.292 25.288 Atomic orbital electron populations 1.21764 0.93261 1.03416 1.02308 1.22925 0.96343 0.82532 1.01347 1.88026 1.19566 1.28282 1.93970 1.22069 0.83823 0.97681 0.93651 0.87292 1.21244 0.80419 0.85360 0.82996 1.90686 1.49010 1.42725 1.63594 1.48716 1.10629 1.40928 1.34572 1.22871 0.84037 0.94413 1.01884 1.22905 0.97255 1.00330 0.94434 1.20882 0.91760 0.96475 0.96214 1.21848 0.95764 0.93953 0.88242 1.21847 1.01514 0.97040 0.94384 1.20541 0.92230 0.86883 0.95023 1.44323 1.63017 1.10916 1.14638 1.19460 1.08470 1.25510 0.86274 0.91564 1.25768 0.96674 1.02624 0.99325 1.70310 1.16309 1.43768 1.27267 0.85377 0.79783 0.76850 0.79141 1.21526 1.21874 1.18983 1.21108 0.96634 0.91749 0.89417 1.21767 1.00003 0.95619 0.96889 1.21552 1.00498 0.97145 0.92683 1.21834 1.02448 0.97514 0.98012 1.21679 1.00998 0.96068 1.00937 0.91794 0.88623 0.93832 0.90283 0.93300 0.89894 0.87227 0.88960 0.87305 0.93280 0.94932 0.91602 0.91112 0.94019 0.99701 0.94209 0.92881 0.98386 0.90640 0.90290 0.88280 0.92593 0.90575 0.90771 0.95707 0.90597 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.28 71.98 0.74 -1.68 16 2 C 0.04 0.76 6.15 71.98 0.44 1.20 16 3 O -0.38 -9.52 8.26 -130.56 -1.08 -10.60 16 4 C 0.09 1.92 1.67 29.85 0.05 1.97 16 5 H 0.11 1.71 7.29 -2.39 -0.02 1.70 16 6 C 0.51 16.09 6.21 87.66 0.54 16.64 16 7 O -0.58 -25.03 16.90 15.39 0.26 -24.77 16 8 N -0.61 -17.14 3.33 -811.85 -2.70 -19.85 16 9 C 0.09 1.53 6.10 86.96 0.53 2.06 16 10 C -0.11 -2.01 6.00 31.88 0.19 -1.82 16 11 C -0.05 -1.52 0.53 -51.91 -0.03 -1.55 16 12 C 0.12 4.30 5.06 86.48 0.44 4.74 16 13 C -0.11 -3.74 4.78 30.46 0.15 -3.60 16 14 C 0.18 8.66 5.10 86.41 0.44 9.10 16 15 N -0.61 -30.72 2.97 -698.60 -2.08 -32.80 16 16 C -0.27 -14.89 9.50 84.03 0.80 -14.09 16 17 H 0.07 3.59 7.95 -2.91 -0.02 3.57 16 18 C -0.05 -2.72 4.66 84.86 0.40 -2.33 16 19 N -0.93 -57.02 11.80 21.65 0.26 -56.76 16 20 Si 0.96 45.17 29.62 68.60 2.03 47.21 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 C 0.14 5.76 6.24 86.40 0.54 6.30 16 25 C -0.10 -3.21 4.71 30.46 0.14 -3.06 16 26 C -0.10 -1.58 2.58 -10.79 -0.03 -1.61 16 27 C -0.14 -1.39 8.44 71.98 0.61 -0.79 16 28 C -0.14 -2.88 8.81 71.98 0.63 -2.25 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.08 0.90 6.90 -2.39 -0.02 0.88 16 33 H 0.05 0.82 8.06 -2.39 -0.02 0.80 16 34 H 0.08 1.27 7.74 -2.39 -0.02 1.25 16 35 H 0.11 1.15 5.63 -2.39 -0.01 1.14 16 36 H 0.09 1.42 8.01 -2.39 -0.02 1.40 16 37 H 0.11 1.54 8.01 -2.39 -0.02 1.52 16 38 H 0.05 1.82 7.59 -2.39 -0.02 1.81 16 39 H 0.03 1.41 6.08 -2.38 -0.01 1.39 16 40 H 0.07 2.03 7.47 -2.39 -0.02 2.01 16 41 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.04 2.27 6.33 -2.39 -0.02 2.26 16 43 H -0.01 -0.81 6.53 -2.38 -0.02 -0.83 16 44 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 45 H 0.05 2.20 7.93 -2.39 -0.02 2.19 16 46 H 0.00 -0.08 7.48 -2.39 -0.02 -0.10 16 47 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.08 2.06 8.10 -2.39 -0.02 2.04 16 49 H 0.10 1.25 5.99 -2.39 -0.01 1.24 16 50 H 0.05 0.65 7.11 -2.39 -0.02 0.63 16 51 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.07 0.47 8.14 -2.39 -0.02 0.46 16 53 H 0.02 0.65 7.53 -2.38 -0.02 0.63 16 54 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 55 H 0.05 1.22 7.39 -2.38 -0.02 1.20 16 Total: -1.00 -79.09 409.58 4.12 -74.98 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.84 Total: 13.34 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 6.58 Total: 9.25 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -4.53 Total: -109.41 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.82 Total: -35.37 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.21 kcal Total: -79.09 4.12 -74.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723698017.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.427 kcal (2) G-P(sol) polarization free energy of solvation -79.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds