Wall clock time and date at job start Tue Mar 31 2020 22:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00072 * 2 1 4 4 C 1.53001 * 109.47067 * 149.99740 * 3 2 1 5 5 C 1.53001 * 109.47076 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47360 * 300.00392 * 5 4 3 7 7 C 1.50694 * 109.47198 * 299.99748 * 6 5 4 8 8 O 1.21278 * 119.99914 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99895 * 179.97438 * 7 6 5 10 10 C 1.46508 * 120.00022 * 174.87094 * 9 7 6 11 11 H 1.09003 * 109.46708 * 38.25410 * 10 9 7 12 12 C 1.53002 * 109.46885 * 158.25276 * 10 9 7 13 13 N 1.46499 * 109.47189 * 302.15692 * 12 10 9 14 14 C 1.36932 * 119.99970 * 179.97438 * 13 12 10 15 15 H 1.08007 * 120.00215 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99745 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00331 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47022 * 90.00007 * 18 16 14 20 20 H 1.48503 * 109.47358 * 209.99760 * 18 16 14 21 21 H 1.48496 * 109.47072 * 330.00090 * 18 16 14 22 22 C 1.52994 * 109.46899 * 278.25445 * 10 9 7 23 23 C 1.54267 * 110.03183 * 299.41262 * 22 10 9 24 24 C 1.54895 * 104.19459 * 217.10807 * 23 22 10 25 25 C 1.54886 * 102.75169 * 37.94428 * 24 23 22 26 26 C 1.53883 * 110.03084 * 182.25025 * 22 10 9 27 27 C 1.52995 * 109.47054 * 60.00188 * 6 5 4 28 28 C 1.52995 * 109.47092 * 269.99962 * 3 2 1 29 29 H 1.08994 * 109.47252 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47064 * 299.99612 * 1 2 3 31 31 H 1.08996 * 109.47363 * 59.99741 * 1 2 3 32 32 H 1.09000 * 109.47148 * 30.00409 * 3 2 1 33 33 H 1.09000 * 109.47115 * 60.00356 * 4 3 2 34 34 H 1.08998 * 109.47281 * 300.00169 * 4 3 2 35 35 H 1.09000 * 109.46870 * 60.00833 * 5 4 3 36 36 H 1.09002 * 109.47067 * 180.02562 * 5 4 3 37 37 H 1.09004 * 109.47165 * 179.97438 * 6 5 4 38 38 H 0.96997 * 120.00354 * 354.87045 * 9 7 6 39 39 H 1.08998 * 109.47239 * 62.15984 * 12 10 9 40 40 H 1.08999 * 109.46533 * 182.15784 * 12 10 9 41 41 H 0.97002 * 119.99734 * 0.02562 * 13 12 10 42 42 H 0.96998 * 120.00027 * 180.02562 * 17 16 14 43 43 H 1.08995 * 110.02216 * 60.85621 * 22 10 9 44 44 H 1.08993 * 110.49059 * 335.78418 * 23 22 10 45 45 H 1.08997 * 110.48490 * 98.43531 * 23 22 10 46 46 H 1.08999 * 110.75405 * 279.62823 * 24 23 22 47 47 H 1.09002 * 110.91135 * 156.33149 * 24 23 22 48 48 H 1.08994 * 110.49090 * 203.38297 * 25 24 23 49 49 H 1.09001 * 110.59924 * 80.78312 * 25 24 23 50 50 H 1.09001 * 110.02718 * 238.57079 * 26 22 10 51 51 H 1.08998 * 110.03160 * 359.97438 * 26 22 10 52 52 H 1.09003 * 109.47419 * 180.02562 * 27 6 5 53 53 H 1.09000 * 109.47599 * 59.99592 * 27 6 5 54 54 H 1.09000 * 109.47251 * 299.99742 * 28 3 2 55 55 H 1.09002 * 109.47165 * 60.00071 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2632 0.7213 5 6 3.9815 2.6608 0.7208 6 6 4.1890 3.1261 -0.7219 7 6 5.1086 2.1664 -1.4319 8 8 5.5537 1.2046 -0.8423 9 7 5.4354 2.3763 -2.7225 10 6 6.4161 1.5090 -3.3802 11 1 6.2772 0.4820 -3.0422 12 6 6.2218 1.5777 -4.8963 13 7 4.8524 1.1796 -5.2317 14 6 4.4445 1.1645 -6.5388 15 1 5.1325 1.4457 -7.3225 16 6 3.1469 0.7879 -6.8566 17 7 2.3083 0.4457 -5.9016 18 14 2.5907 0.7665 -8.6398 19 1 2.8578 -0.5716 -9.2256 20 1 1.1356 1.0552 -8.7079 21 1 3.3364 1.7990 -9.4033 22 6 7.8291 1.9761 -3.0253 23 6 8.0445 3.4243 -3.5112 24 6 9.5166 3.4484 -3.9926 25 6 9.6814 2.0595 -4.6581 26 6 8.8698 1.1083 -3.7546 27 6 2.8404 3.1684 -1.4430 28 6 2.2177 1.7713 -1.4424 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.3450 1.9993 0.5139 33 1 4.0242 0.5693 0.2075 34 1 3.2111 0.9313 1.7489 35 1 3.3164 3.3550 1.2344 36 1 4.9425 2.6306 1.2342 37 1 4.6322 4.1220 -0.7222 38 1 5.0215 3.1016 -3.2159 39 1 6.3982 2.5971 -5.2394 40 1 6.9260 0.9033 -5.3836 41 1 4.2345 0.9275 -4.5278 42 1 1.4017 0.1822 -6.1237 43 1 7.9822 1.9164 -1.9478 44 1 7.3698 3.6545 -4.3357 45 1 7.8999 4.1274 -2.6910 46 1 10.1974 3.5552 -3.1481 47 1 9.6756 4.2459 -4.7184 48 1 10.7311 1.7666 -4.6748 49 1 9.2722 2.0674 -5.6684 50 1 9.5285 0.6281 -3.0309 51 1 8.3682 0.3542 -4.3610 52 1 2.9882 3.4995 -2.4710 53 1 2.1752 3.8626 -0.9294 54 1 2.8830 1.0774 -1.9563 55 1 1.2568 1.8014 -1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724096335.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:26 Heat of formation + Delta-G solvation = -119.464093 kcal Electronic energy + Delta-G solvation = -32201.107297 eV Core-core repulsion = 28236.109260 eV Total energy + Delta-G solvation = -3964.998037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.68941 -40.11774 -38.98971 -36.95941 -36.63488 -35.20896 -33.08714 -31.79096 -31.40456 -30.48211 -29.51121 -27.83779 -27.39213 -25.29809 -24.20921 -23.65135 -23.08724 -22.11171 -21.37900 -20.43770 -20.01595 -19.04491 -17.69717 -17.68058 -17.42125 -16.87873 -16.62499 -16.26345 -16.09826 -16.04543 -15.68432 -15.28067 -15.08007 -14.90665 -14.81939 -14.51551 -14.14594 -14.02639 -13.99011 -13.50264 -13.32481 -13.10279 -13.06152 -12.83030 -12.78004 -12.61911 -12.51863 -12.20227 -12.11177 -11.99936 -11.91703 -11.88937 -11.85032 -11.78652 -11.61986 -11.44784 -11.38859 -11.33419 -11.15718 -10.88901 -10.42424 -10.36638 -9.80772 -8.97115 -7.91721 -5.21393 1.46720 1.48349 1.56329 1.79989 2.34368 2.56122 2.87793 3.41475 3.63553 3.65971 3.71423 3.75578 3.81854 3.93548 4.05791 4.09222 4.17908 4.21035 4.30548 4.36830 4.40671 4.46041 4.50148 4.54433 4.55609 4.59477 4.62959 4.70589 4.76742 4.80347 4.81470 4.86599 4.87908 4.92321 4.95398 5.06372 5.09507 5.13478 5.14680 5.17910 5.25139 5.27743 5.30243 5.36206 5.38634 5.49425 5.51273 5.54516 5.57689 5.74358 6.27275 6.36714 6.71180 7.34909 7.42668 8.08805 8.33185 9.30301 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006864 B = 0.005270 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4078.407910 B = 5312.239802 C = 8655.618562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.094 3.906 4 C -0.128 4.128 5 C -0.085 4.085 6 C -0.104 4.104 7 C 0.515 3.485 8 O -0.578 6.578 9 N -0.707 5.707 10 C 0.156 3.844 11 H 0.044 0.956 12 C 0.149 3.851 13 N -0.741 5.741 14 C -0.242 4.242 15 H 0.076 0.924 16 C -0.070 4.070 17 N -0.962 5.962 18 Si 0.969 3.031 19 H -0.293 1.293 20 H -0.297 1.297 21 H -0.267 1.267 22 C -0.087 4.087 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.099 4.099 28 C -0.137 4.137 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.406 0.594 39 H 0.044 0.956 40 H 0.032 0.968 41 H 0.373 0.627 42 H 0.248 0.752 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.053 0.947 52 H 0.066 0.934 53 H 0.107 0.893 54 H 0.026 0.974 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.094 11.188 12.860 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.338 6.338 3 C 0.037 3.963 4 C -0.166 4.166 5 C -0.123 4.123 6 C -0.125 4.125 7 C 0.303 3.697 8 O -0.458 6.458 9 N -0.357 5.357 10 C 0.051 3.949 11 H 0.062 0.938 12 C 0.023 3.977 13 N -0.384 5.384 14 C -0.374 4.374 15 H 0.094 0.906 16 C -0.263 4.263 17 N -0.613 5.613 18 Si 0.798 3.202 19 H -0.221 1.221 20 H -0.224 1.224 21 H -0.192 1.192 22 C -0.107 4.107 23 C -0.153 4.153 24 C -0.154 4.154 25 C -0.158 4.158 26 C -0.161 4.161 27 C -0.137 4.137 28 C -0.175 4.175 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.149 0.851 38 H 0.241 0.759 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.205 0.795 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.086 0.914 51 H 0.072 0.928 52 H 0.084 0.916 53 H 0.125 0.875 54 H 0.045 0.955 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.565 10.378 13.080 17.941 hybrid contribution -1.281 -0.588 -1.302 1.919 sum 5.284 9.790 11.778 16.201 Atomic orbital electron populations 1.22915 0.80039 1.03391 1.00602 1.87911 1.21176 1.29563 1.95135 1.22264 0.95371 0.83962 0.94720 1.21780 0.95021 0.99476 1.00312 1.21279 1.01766 0.95326 0.93886 1.21489 0.94979 0.99819 0.96188 1.21166 0.80674 0.86056 0.81789 1.90593 1.56428 1.31712 1.67054 1.45942 1.43538 1.34470 1.11766 1.20962 0.88683 0.93343 0.91934 0.93783 1.21148 0.86396 0.98227 0.91943 1.42531 1.09558 1.81306 1.05001 1.19569 0.95392 1.36766 0.85655 0.90566 1.25498 0.96927 1.02901 1.00982 1.69846 1.05687 1.53334 1.32389 0.85212 0.76845 0.77630 0.80473 1.22064 1.22362 1.19154 1.21974 0.92460 0.96646 0.99632 1.22446 0.97532 0.94606 1.00758 1.22457 0.95726 0.96923 1.00312 1.22333 0.99966 0.95021 0.98451 1.22228 0.97027 0.98182 0.98688 1.21458 0.95100 0.96033 1.01076 1.21937 1.00532 0.97717 0.97338 0.89286 0.91871 0.94464 0.89798 0.92230 0.91213 0.87996 0.90988 0.85074 0.75888 0.93866 0.95069 0.79534 0.94321 0.91882 0.91456 0.91229 0.90855 0.90608 0.90520 0.92177 0.91400 0.92801 0.91579 0.87499 0.95464 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.82 113.37 1.23 1.89 16 2 O -0.42 -14.04 10.35 -148.98 -1.54 -15.58 16 3 C 0.09 2.69 2.61 30.59 0.08 2.77 16 4 C -0.13 -3.65 5.28 30.59 0.16 -3.49 16 5 C -0.08 -1.81 5.09 30.59 0.16 -1.66 16 6 C -0.10 -2.36 3.02 -11.55 -0.03 -2.40 16 7 C 0.51 16.44 5.56 87.66 0.49 16.92 16 8 O -0.58 -22.71 13.34 -3.02 -0.04 -22.75 16 9 N -0.71 -22.52 4.24 -442.53 -1.88 -24.40 16 10 C 0.16 5.44 1.82 44.99 0.08 5.52 16 11 H 0.04 1.88 7.61 -2.39 -0.02 1.86 16 12 C 0.15 5.82 5.24 86.38 0.45 6.27 16 13 N -0.74 -37.14 5.46 -343.46 -1.87 -39.02 16 14 C -0.24 -13.27 9.99 84.03 0.84 -12.43 16 15 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 16 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 17 N -0.96 -58.79 13.06 21.65 0.28 -58.51 16 18 Si 0.97 45.95 29.55 68.60 2.03 47.97 16 19 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 20 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 C -0.09 -2.42 2.92 -10.07 -0.03 -2.45 16 23 C -0.12 -2.65 5.83 31.67 0.18 -2.46 16 24 C -0.12 -2.24 6.91 31.89 0.22 -2.02 16 25 C -0.12 -2.58 6.83 31.67 0.22 -2.36 16 26 C -0.12 -3.20 5.93 31.32 0.19 -3.01 16 27 C -0.10 -2.38 5.35 30.58 0.16 -2.21 16 28 C -0.14 -4.47 5.32 30.58 0.16 -4.31 16 29 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 1.21 8.09 -2.38 -0.02 1.19 16 31 H 0.04 0.95 7.87 -2.39 -0.02 0.93 16 32 H 0.08 1.85 7.79 -2.39 -0.02 1.83 16 33 H 0.06 2.25 5.51 -2.39 -0.01 2.24 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 37 H 0.13 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.41 12.21 7.85 -92.71 -0.73 11.48 16 39 H 0.04 1.59 5.98 -2.39 -0.01 1.58 16 40 H 0.03 1.26 6.41 -2.39 -0.02 1.24 16 41 H 0.37 20.56 7.43 -92.71 -0.69 19.87 16 42 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 43 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.07 1.67 5.68 -2.39 -0.01 1.66 16 45 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 51 H 0.05 1.60 6.17 -2.39 -0.01 1.59 16 52 H 0.07 1.73 7.46 -2.39 -0.02 1.71 16 53 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 54 H 0.03 1.15 7.21 -2.39 -0.02 1.13 16 55 H 0.05 1.86 7.87 -2.39 -0.02 1.84 16 Total: -1.00 -71.54 412.21 1.46 -70.08 By element: Atomic # 1 Polarization: 51.72 SS G_CDS: -0.54 Total: 51.18 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 5.02 Total: -8.98 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -3.47 Total: -121.92 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.58 Total: -38.33 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -71.54 1.46 -70.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724096335.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.383 kcal (2) G-P(sol) polarization free energy of solvation -71.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds