Wall clock time and date at job start Tue Mar 31 2020 22:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99724 * 2 1 4 4 C 1.52998 * 109.46649 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46856 * 175.70556 * 4 3 2 6 6 C 1.50701 * 115.55160 * 294.73576 * 5 4 3 7 7 O 1.21279 * 119.99884 * 99.33399 * 6 5 4 8 8 N 1.34772 * 120.00070 * 279.33162 * 6 5 4 9 9 C 1.46503 * 119.99989 * 174.98663 * 8 6 5 10 10 C 1.53003 * 109.46928 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47173 * 55.00768 * 10 9 8 12 12 C 1.53002 * 109.46585 * 175.00213 * 10 9 8 13 13 C 1.53009 * 109.46822 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.46989 * 300.00048 * 13 12 10 15 15 H 1.09002 * 109.47427 * 300.00206 * 14 13 12 16 16 C 1.52997 * 109.46997 * 179.97438 * 14 13 12 17 17 N 1.46501 * 109.47048 * 175.00144 * 16 14 13 18 18 C 1.36944 * 119.99895 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99625 * 359.97438 * 18 17 16 20 20 C 1.38808 * 119.99780 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99687 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00130 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46950 * 269.99788 * 22 20 18 24 24 H 1.48501 * 109.47284 * 29.99779 * 22 20 18 25 25 H 1.48501 * 109.47077 * 150.00248 * 22 20 18 26 26 C 1.53003 * 109.47013 * 60.00215 * 14 13 12 27 27 C 1.52998 * 109.47258 * 295.00281 * 10 9 8 28 28 C 1.53000 * 117.51733 * 80.44002 * 5 4 3 29 29 C 1.52998 * 117.49605 * 149.06722 * 5 4 3 30 30 H 1.09001 * 109.47063 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47089 * 299.99776 * 1 2 3 32 32 H 1.09007 * 109.47336 * 60.00018 * 1 2 3 33 33 H 1.09002 * 109.46822 * 60.00249 * 3 2 1 34 34 H 1.08998 * 109.47551 * 300.00014 * 3 2 1 35 35 H 1.09002 * 109.46964 * 55.70821 * 4 3 2 36 36 H 1.09003 * 109.47650 * 295.70604 * 4 3 2 37 37 H 0.97001 * 119.99912 * 354.99621 * 8 6 5 38 38 H 1.09005 * 109.46798 * 60.00616 * 9 8 6 39 39 H 1.09002 * 109.47370 * 300.00819 * 9 8 6 40 40 H 1.09000 * 109.47414 * 60.00446 * 12 10 9 41 41 H 1.08995 * 109.47437 * 299.99909 * 12 10 9 42 42 H 1.08993 * 109.46680 * 180.02562 * 13 12 10 43 43 H 1.09000 * 109.46912 * 59.99955 * 13 12 10 44 44 H 1.08998 * 109.46904 * 55.00305 * 16 14 13 45 45 H 1.08993 * 109.47597 * 295.00362 * 16 14 13 46 46 H 0.97003 * 120.00273 * 0.02562 * 17 16 14 47 47 H 0.97004 * 119.99681 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.47533 * 59.99697 * 26 14 13 49 49 H 1.09004 * 109.46841 * 179.97438 * 26 14 13 50 50 H 1.09000 * 109.47218 * 299.99846 * 27 10 9 51 51 H 1.09002 * 109.46971 * 60.00179 * 27 10 9 52 52 H 1.08999 * 117.49651 * 214.96849 * 28 5 4 53 53 H 1.08995 * 117.49929 * 359.97438 * 28 5 4 54 54 H 1.08993 * 117.50247 * 359.97317 * 29 5 4 55 55 H 1.09001 * 117.49985 * 144.97948 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1574 2.5783 -0.1074 6 6 3.8951 3.3089 -1.3991 7 8 3.0229 4.1498 -1.4538 8 7 4.6298 3.0278 -2.4934 9 6 4.3040 3.6568 -3.7758 10 6 5.2835 3.1703 -4.8459 11 1 5.2718 2.0809 -4.8808 12 6 4.8686 3.7287 -6.2086 13 6 5.8477 3.2417 -7.2788 14 6 7.2584 3.7254 -6.9374 15 1 7.2705 4.8148 -6.9026 16 6 8.2375 3.2379 -8.0072 17 7 9.5653 3.7993 -7.7462 18 6 10.6107 3.5006 -8.5788 19 1 10.4564 2.8509 -9.4276 20 6 11.8686 4.0330 -8.3318 21 7 12.8735 3.7455 -9.1318 22 14 12.1353 5.1574 -6.8641 23 1 11.8919 6.5655 -7.2687 24 1 11.1940 4.7849 -5.7776 25 1 13.5318 5.0160 -6.3795 26 6 7.6732 3.1670 -5.5747 27 6 6.6940 3.6546 -4.5042 28 6 4.2463 3.4138 1.1713 29 6 5.5120 2.8016 0.5680 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8465 -0.8899 35 1 3.8522 0.5786 -0.8482 36 1 3.8621 0.7117 0.9268 37 1 5.3742 2.4089 -2.4320 38 1 4.3798 4.7399 -3.6789 39 1 3.2879 3.3881 -4.0646 40 1 4.8802 4.8181 -6.1738 41 1 3.8637 3.3837 -6.4520 42 1 5.5523 3.6398 -8.2495 43 1 5.8356 2.1523 -7.3135 44 1 7.8930 3.5613 -8.9895 45 1 8.2917 2.1497 -7.9814 46 1 9.7040 4.3826 -6.9837 47 1 13.7527 4.1172 -8.9589 48 1 7.6612 2.0776 -5.6094 49 1 8.6785 3.5113 -5.3317 50 1 6.7057 4.7439 -4.4694 51 1 6.9895 3.2567 -3.5334 52 1 4.1150 4.4918 1.0782 53 1 3.8612 2.9708 2.0897 54 1 5.9598 1.9558 1.0896 55 1 6.2136 3.4766 0.0779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724606090.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:18 Heat of formation + Delta-G solvation = -100.347401 kcal Electronic energy + Delta-G solvation = -29693.294873 eV Core-core repulsion = 25729.125798 eV Total energy + Delta-G solvation = -3964.169075 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.37380 -40.06255 -38.93110 -37.78708 -37.01607 -35.60224 -33.75770 -32.09147 -31.97828 -31.63512 -28.50534 -27.47965 -26.06510 -24.72187 -24.05939 -23.80347 -23.26245 -22.70193 -21.65825 -20.91806 -20.27505 -19.62977 -18.02659 -17.44491 -17.15159 -16.92852 -16.63806 -16.50488 -16.13575 -16.01234 -15.82975 -15.62105 -15.24227 -15.03676 -14.69415 -14.65880 -14.54391 -14.24842 -13.97288 -13.75843 -13.52633 -13.31750 -13.12999 -13.03567 -12.93910 -12.63250 -12.50133 -12.44545 -12.37870 -12.22402 -12.14929 -11.96859 -11.84929 -11.78937 -11.57477 -11.32866 -11.17132 -11.03148 -10.93617 -10.87034 -10.74161 -10.66888 -10.10853 -9.28424 -8.03550 -5.36350 1.35576 1.39694 1.47114 1.51830 2.10404 2.47293 2.48867 2.88794 3.27640 3.57562 3.61308 3.68076 3.71624 3.81080 3.84308 3.89424 3.95501 4.13149 4.17410 4.24899 4.30566 4.33105 4.46239 4.47808 4.52327 4.54625 4.56581 4.61569 4.65368 4.72971 4.74629 4.77847 4.82187 4.83088 4.93120 4.96028 4.97969 5.02019 5.06415 5.09258 5.18350 5.19901 5.20916 5.29323 5.32761 5.37924 5.46308 5.54794 5.65273 5.75436 6.13377 6.21019 6.50450 7.07827 7.18362 7.85017 8.04557 9.18181 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016265 B = 0.002025 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.050104 B =13826.098725 C =14644.341465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.063 3.937 4 C -0.065 4.065 5 C -0.167 4.167 6 C 0.546 3.454 7 O -0.581 6.581 8 N -0.712 5.712 9 C 0.128 3.872 10 C -0.086 4.086 11 H 0.088 0.912 12 C -0.105 4.105 13 C -0.103 4.103 14 C -0.089 4.089 15 H 0.064 0.936 16 C 0.156 3.844 17 N -0.757 5.757 18 C -0.236 4.236 19 H 0.054 0.946 20 C -0.066 4.066 21 N -0.984 5.984 22 Si 0.956 3.044 23 H -0.279 1.279 24 H -0.250 1.250 25 H -0.294 1.294 26 C -0.109 4.109 27 C -0.107 4.107 28 C -0.150 4.150 29 C -0.140 4.140 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.031 0.969 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.414 0.586 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.019 0.981 45 H 0.022 0.978 46 H 0.366 0.634 47 H 0.258 0.742 48 H 0.065 0.935 49 H 0.043 0.957 50 H 0.058 0.942 51 H 0.073 0.927 52 H 0.087 0.913 53 H 0.121 0.879 54 H 0.129 0.871 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.420 -5.114 23.951 35.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.013 4.013 4 C -0.102 4.102 5 C -0.170 4.170 6 C 0.332 3.668 7 O -0.461 6.461 8 N -0.364 5.364 9 C 0.005 3.995 10 C -0.105 4.105 11 H 0.107 0.893 12 C -0.143 4.143 13 C -0.141 4.141 14 C -0.108 4.108 15 H 0.082 0.918 16 C 0.030 3.970 17 N -0.402 5.402 18 C -0.367 4.367 19 H 0.072 0.928 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.783 3.217 23 H -0.206 1.206 24 H -0.174 1.174 25 H -0.221 1.221 26 C -0.147 4.147 27 C -0.144 4.144 28 C -0.187 4.187 29 C -0.177 4.177 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.251 0.749 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.199 0.801 47 H 0.067 0.933 48 H 0.084 0.916 49 H 0.062 0.938 50 H 0.076 0.924 51 H 0.091 0.909 52 H 0.105 0.895 53 H 0.139 0.861 54 H 0.147 0.853 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -25.860 -4.801 23.694 35.400 hybrid contribution 0.854 0.809 0.029 1.176 sum -25.006 -3.992 23.723 34.699 Atomic orbital electron populations 1.22918 0.79659 1.03920 1.00568 1.87802 1.21328 1.28393 1.95560 1.22479 0.94561 0.84136 1.00145 1.20885 0.92150 0.92195 1.04990 1.21275 1.05701 0.97934 0.92124 1.19957 0.80478 0.81387 0.84934 1.90683 1.34828 1.34962 1.85592 1.45978 1.34272 1.47541 1.08576 1.21382 0.98632 0.97400 0.82116 1.21322 0.93662 1.01539 0.93955 0.89324 1.21454 0.99038 1.00904 0.92889 1.21440 0.92510 1.01314 0.98865 1.21300 0.94950 1.00079 0.94473 0.91796 1.20877 0.83697 0.95865 0.96570 1.42743 1.06578 1.59034 1.31887 1.19069 0.88788 1.23301 1.05509 0.92825 1.25536 0.95388 1.02742 1.02065 1.69895 1.01321 1.50761 1.41527 0.85398 0.77132 0.78978 0.80216 1.20570 1.17404 1.22080 1.21507 0.98241 1.00804 0.94102 1.21575 0.93844 1.00810 0.98217 1.23087 1.01347 0.99184 0.95082 1.23260 0.89089 1.03987 1.01315 0.88061 0.93093 0.94104 0.92582 0.95045 0.90088 0.88164 0.74921 0.92468 0.91777 0.91797 0.90234 0.91564 0.91251 0.96344 0.96013 0.80075 0.93347 0.91648 0.93844 0.92354 0.90851 0.89469 0.86065 0.85301 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.09 10.70 -148.98 -1.59 -8.68 16 3 C 0.06 1.00 5.86 71.98 0.42 1.42 16 4 C -0.06 -0.78 5.46 30.59 0.17 -0.61 16 5 C -0.17 -2.20 1.87 -52.93 -0.10 -2.29 16 6 C 0.55 10.49 6.30 87.66 0.55 11.04 16 7 O -0.58 -16.08 17.01 -3.03 -0.05 -16.13 16 8 N -0.71 -10.84 5.28 -463.05 -2.45 -13.29 16 9 C 0.13 2.11 5.07 86.38 0.44 2.55 16 10 C -0.09 -1.30 2.22 -10.79 -0.02 -1.33 16 11 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 12 C -0.10 -1.71 5.20 30.60 0.16 -1.55 16 13 C -0.10 -2.13 5.20 30.60 0.16 -1.97 16 14 C -0.09 -2.44 2.23 -10.79 -0.02 -2.47 16 15 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 16 C 0.16 5.88 5.65 86.38 0.49 6.37 16 17 N -0.76 -35.64 5.13 -343.47 -1.76 -37.41 16 18 C -0.24 -13.70 10.47 84.03 0.88 -12.82 16 19 H 0.05 3.43 8.06 -2.91 -0.02 3.40 16 20 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 21 N -0.98 -63.79 13.97 21.65 0.30 -63.48 16 22 Si 0.96 45.70 27.74 68.60 1.90 47.60 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 25 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 26 C -0.11 -2.72 5.08 30.61 0.16 -2.57 16 27 C -0.11 -1.95 5.08 30.61 0.16 -1.79 16 28 C -0.15 -1.74 9.88 30.59 0.30 -1.44 16 29 C -0.14 -1.24 9.92 30.59 0.30 -0.93 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.03 0.62 7.59 -2.39 -0.02 0.60 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 0.89 8.09 -2.39 -0.02 0.87 16 37 H 0.41 4.50 7.66 -92.71 -0.71 3.80 16 38 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.37 16.36 4.71 -92.71 -0.44 15.92 16 47 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 48 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.04 1.30 7.18 -2.39 -0.02 1.29 16 50 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.07 1.12 7.18 -2.39 -0.02 1.10 16 52 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 53 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 54 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 55 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -75.66 432.33 1.74 -73.92 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -0.36 Total: 27.80 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 5.75 Total: -10.33 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -3.91 Total: -114.18 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -1.65 Total: -24.81 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Total: -75.66 1.74 -73.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724606090.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.430 kcal (2) G-P(sol) polarization free energy of solvation -75.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds