Wall clock time and date at job start Tue Mar 31 2020 22:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99967 * 2 1 4 4 C 1.53000 * 109.47129 * 149.99842 * 3 2 1 5 5 C 1.52997 * 109.47003 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47365 * 300.00060 * 5 4 3 7 7 C 1.52997 * 109.47365 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47714 * 175.00111 * 7 6 5 9 9 O 1.21287 * 119.99274 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00662 * 179.97438 * 8 7 6 11 11 C 1.47026 * 125.64456 * 0.03988 * 10 8 7 12 12 C 1.54329 * 107.26752 * 181.02216 * 11 10 8 13 13 C 1.55155 * 102.94536 * 22.19650 * 12 11 10 14 14 H 1.08996 * 111.03490 * 82.58104 * 13 12 11 15 15 C 1.52992 * 111.00311 * 206.42169 * 13 12 11 16 16 C 1.53004 * 109.47319 * 287.19336 * 15 13 12 17 17 N 1.46499 * 109.47198 * 180.02562 * 16 15 13 18 18 C 1.36931 * 120.00122 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72427 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71963 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72083 * 22 20 18 26 26 C 1.47425 * 125.65382 * 180.02562 * 10 8 7 27 27 C 1.53000 * 109.47109 * 60.00005 * 6 5 4 28 28 C 1.52999 * 109.46870 * 270.00063 * 3 2 1 29 29 H 1.08998 * 109.46859 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47316 * 299.99977 * 1 2 3 31 31 H 1.09001 * 109.47460 * 60.00144 * 1 2 3 32 32 H 1.08994 * 109.46884 * 30.00052 * 3 2 1 33 33 H 1.09005 * 109.46920 * 59.99848 * 4 3 2 34 34 H 1.08999 * 109.47085 * 299.99969 * 4 3 2 35 35 H 1.09004 * 109.47249 * 179.97438 * 5 4 3 36 36 H 1.09005 * 109.47164 * 60.00294 * 5 4 3 37 37 H 1.09005 * 109.47170 * 300.00230 * 6 5 4 38 38 H 1.09004 * 109.47400 * 54.99622 * 7 6 5 39 39 H 1.09006 * 109.47097 * 295.00426 * 7 6 5 40 40 H 1.08993 * 109.88772 * 300.44047 * 11 10 8 41 41 H 1.09003 * 109.88070 * 61.61361 * 11 10 8 42 42 H 1.08996 * 110.71953 * 263.82725 * 12 11 10 43 43 H 1.09001 * 110.71587 * 140.55879 * 12 11 10 44 44 H 1.09000 * 109.47364 * 167.19356 * 15 13 12 45 45 H 1.08998 * 109.47610 * 47.19418 * 15 13 12 46 46 H 1.08995 * 109.46638 * 60.00097 * 16 15 13 47 47 H 1.08998 * 109.46846 * 300.00550 * 16 15 13 48 48 H 0.97001 * 119.99790 * 359.97438 * 17 16 15 49 49 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 50 50 H 1.08997 * 110.36630 * 37.06402 * 26 10 8 51 51 H 1.09004 * 110.45883 * 274.79499 * 26 10 8 52 52 H 1.09005 * 109.46920 * 60.00072 * 27 6 5 53 53 H 1.08999 * 109.47085 * 179.97438 * 27 6 5 54 54 H 1.09007 * 109.46725 * 299.99634 * 28 3 2 55 55 H 1.08994 * 109.47209 * 59.99777 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2633 0.7213 5 6 3.9814 2.6609 0.7207 6 6 4.1890 3.1262 -0.7219 7 6 4.8109 4.5241 -0.7225 8 6 5.1285 4.9321 -2.1380 9 8 4.8820 4.1788 -3.0560 10 7 5.6863 6.1341 -2.3838 11 6 6.0365 7.1396 -1.3700 12 6 6.6205 8.3580 -2.1158 13 6 6.0441 8.1982 -3.5475 14 1 5.0309 8.5957 -3.6079 15 6 6.9537 8.8634 -4.5823 16 6 6.8289 10.3841 -4.4685 17 7 7.6995 11.0210 -5.4598 18 6 7.7551 12.3865 -5.5455 19 1 7.1574 12.9940 -4.8820 20 6 8.5795 12.9900 -6.4851 21 7 9.3083 12.2497 -7.2934 22 14 8.6612 14.8529 -6.5968 23 1 9.6127 15.2433 -7.6679 24 1 7.3130 15.3893 -6.9128 25 1 9.1227 15.4069 -5.2986 26 6 6.0467 6.6583 -3.7138 27 6 2.8403 3.1684 -1.4432 28 6 2.2176 1.7714 -1.4425 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.3450 1.9993 0.5138 33 1 4.0241 0.5693 0.2074 34 1 3.2111 0.9314 1.7489 35 1 4.9421 2.6310 1.2350 36 1 3.3163 3.3552 1.2343 37 1 4.8541 2.4319 -1.2355 38 1 5.7277 4.5141 -0.1328 39 1 4.1076 5.2349 -0.2885 40 1 5.1447 7.4356 -0.8178 41 1 6.7808 6.7324 -0.6856 42 1 7.7095 8.3149 -2.1315 43 1 6.2768 9.2882 -1.6633 44 1 6.6571 8.5484 -5.5827 45 1 7.9872 8.5690 -4.4002 46 1 7.1256 10.6990 -3.4681 47 1 5.7954 10.6784 -4.6505 48 1 8.2371 10.4754 -6.0549 49 1 9.8847 12.6714 -7.9498 50 1 5.3064 6.3554 -4.4543 51 1 7.0377 6.3101 -4.0049 52 1 2.1752 3.8627 -0.9296 53 1 2.9881 3.5003 -2.4708 54 1 2.8830 1.0774 -1.9563 55 1 1.2568 1.8014 -1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724739792.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:04 Heat of formation + Delta-G solvation = -121.586677 kcal Electronic energy + Delta-G solvation = -29221.917110 eV Core-core repulsion = 25256.827030 eV Total energy + Delta-G solvation = -3965.090080 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.33681 -40.16126 -38.94898 -37.45316 -36.79237 -34.55748 -33.09633 -32.40166 -31.72509 -30.55848 -29.31993 -28.01674 -26.78406 -25.53176 -23.99364 -23.64365 -23.12121 -22.29679 -21.25271 -20.81618 -19.98862 -19.11965 -18.06929 -17.59421 -17.25141 -16.78512 -16.64949 -16.39590 -16.06243 -15.87809 -15.43487 -15.34021 -15.14535 -14.95086 -14.75930 -14.59987 -14.26818 -14.05817 -13.76686 -13.69477 -13.32242 -13.22743 -13.08456 -12.91403 -12.83990 -12.79804 -12.71584 -12.45810 -12.33403 -12.21995 -12.04404 -11.95592 -11.77945 -11.64396 -11.56683 -11.53026 -11.49902 -11.47066 -11.18620 -10.89818 -10.75706 -10.32126 -9.61452 -8.99106 -7.94470 -5.23670 1.48147 1.51472 1.57692 1.66886 2.01890 2.57264 2.82294 3.38987 3.40748 3.63528 3.72427 3.73196 3.80648 3.82436 3.93306 4.13258 4.18638 4.27688 4.33217 4.35067 4.37220 4.45938 4.48252 4.48835 4.52797 4.55014 4.58736 4.61540 4.64313 4.68895 4.78647 4.80573 4.83874 4.86541 4.89752 4.94745 5.00649 5.03751 5.12139 5.14510 5.16261 5.23154 5.25644 5.28684 5.35496 5.39725 5.47287 5.49392 5.50473 5.55138 6.27889 6.30197 6.58394 7.20164 7.33730 8.11156 8.33039 9.29084 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.037734 B = 0.001477 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.865409 B =18958.481441 C =19155.227188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.088 3.912 4 C -0.115 4.115 5 C -0.102 4.102 6 C -0.071 4.071 7 C -0.123 4.123 8 C 0.517 3.483 9 O -0.585 6.585 10 N -0.622 5.622 11 C 0.101 3.899 12 C -0.126 4.126 13 C -0.085 4.085 14 H 0.087 0.913 15 C -0.103 4.103 16 C 0.154 3.846 17 N -0.751 5.751 18 C -0.248 4.248 19 H 0.077 0.923 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.296 1.296 24 H -0.278 1.278 25 H -0.275 1.275 26 C 0.110 3.890 27 C -0.113 4.113 28 C -0.135 4.135 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.030 0.970 47 H 0.017 0.983 48 H 0.372 0.628 49 H 0.251 0.749 50 H 0.059 0.941 51 H 0.062 0.938 52 H 0.071 0.929 53 H 0.055 0.945 54 H 0.049 0.951 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.507 -21.664 23.650 35.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.031 3.969 4 C -0.152 4.152 5 C -0.140 4.140 6 C -0.090 4.090 7 C -0.162 4.162 8 C 0.308 3.692 9 O -0.465 6.465 10 N -0.355 5.355 11 C -0.020 4.020 12 C -0.163 4.163 13 C -0.104 4.104 14 H 0.105 0.895 15 C -0.141 4.141 16 C 0.028 3.972 17 N -0.393 5.393 18 C -0.380 4.380 19 H 0.095 0.905 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.222 1.222 24 H -0.204 1.204 25 H -0.201 1.201 26 C -0.013 4.013 27 C -0.151 4.151 28 C -0.173 4.173 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.115 0.885 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.035 0.965 48 H 0.204 0.796 49 H 0.060 0.940 50 H 0.078 0.922 51 H 0.080 0.920 52 H 0.090 0.910 53 H 0.074 0.926 54 H 0.068 0.932 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.615 -22.132 23.271 35.710 hybrid contribution 0.299 0.908 -1.358 1.661 sum -15.317 -21.224 21.913 34.135 Atomic orbital electron populations 1.22933 0.80012 1.03576 1.00604 1.87877 1.21058 1.29043 1.95181 1.22273 0.95566 0.83991 0.95072 1.21576 0.94687 0.98178 1.00773 1.21527 1.02226 0.95398 0.94829 1.20918 0.96302 0.95008 0.96804 1.21771 1.04423 0.98625 0.91416 1.21162 0.75816 0.79300 0.92898 1.90673 1.54893 1.52439 1.48537 1.48717 1.61101 1.16772 1.08912 1.22278 1.01394 0.87614 0.90750 1.22758 1.01238 0.98523 0.93810 1.22152 0.99987 0.92763 0.95524 0.89462 1.21499 0.99600 0.94271 0.98725 1.20796 0.92771 0.91671 0.91955 1.42639 1.51635 1.03495 1.41568 1.19642 1.19871 0.84457 1.14027 0.90462 1.25608 0.99927 1.02488 0.98900 1.69824 1.31986 1.35707 1.24682 0.85187 0.77276 0.79996 0.77158 1.22221 1.20396 1.20107 1.22159 1.00058 0.93504 0.85606 1.21587 0.96190 0.96052 1.01230 1.21941 1.00602 0.97294 0.97436 0.88816 0.92809 0.93948 0.90877 0.92504 0.90315 0.89583 0.89840 0.92638 0.86425 0.86434 0.88954 0.89144 0.90524 0.88520 0.92749 0.91864 0.95172 0.96527 0.79631 0.94037 0.92203 0.91992 0.91034 0.92597 0.93201 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.82 113.37 1.23 1.51 16 2 O -0.41 -7.21 10.35 -148.98 -1.54 -8.75 16 3 C 0.09 1.27 2.61 30.59 0.08 1.35 16 4 C -0.11 -1.41 5.57 30.59 0.17 -1.24 16 5 C -0.10 -0.91 5.20 30.59 0.16 -0.75 16 6 C -0.07 -1.02 1.84 -10.80 -0.02 -1.04 16 7 C -0.12 -1.47 4.37 29.85 0.13 -1.34 16 8 C 0.52 11.16 7.57 87.66 0.66 11.82 16 9 O -0.58 -17.92 14.22 -3.05 -0.04 -17.96 16 10 N -0.62 -12.38 3.33 -811.83 -2.70 -15.08 16 11 C 0.10 1.31 6.49 86.73 0.56 1.87 16 12 C -0.13 -2.14 5.90 31.78 0.19 -1.96 16 13 C -0.08 -1.91 3.00 -9.41 -0.03 -1.94 16 14 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 15 C -0.10 -3.10 4.83 30.59 0.15 -2.95 16 16 C 0.15 5.89 6.16 86.38 0.53 6.42 16 17 N -0.75 -38.32 5.60 -343.46 -1.92 -40.24 16 18 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 19 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 20 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 21 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 22 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 C 0.11 2.62 6.38 86.85 0.55 3.18 16 27 C -0.11 -1.92 4.94 30.58 0.15 -1.77 16 28 C -0.13 -2.34 5.53 30.58 0.17 -2.18 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.45 8.08 -2.39 -0.02 0.43 16 31 H 0.04 0.45 7.87 -2.39 -0.02 0.44 16 32 H 0.07 0.84 7.79 -2.39 -0.02 0.82 16 33 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 37 H 0.06 1.08 7.96 -2.38 -0.02 1.06 16 38 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 42 H 0.08 1.40 7.91 -2.39 -0.02 1.38 16 43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.06 1.94 7.97 -2.39 -0.02 1.92 16 46 H 0.03 1.10 7.75 -2.39 -0.02 1.08 16 47 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 48 H 0.37 20.32 7.67 -92.71 -0.71 19.61 16 49 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 50 H 0.06 1.62 8.04 -2.39 -0.02 1.60 16 51 H 0.06 1.56 8.03 -2.38 -0.02 1.54 16 52 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 53 H 0.06 1.33 5.95 -2.39 -0.01 1.32 16 54 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 55 H 0.06 1.00 7.87 -2.39 -0.02 0.98 16 Total: -1.00 -73.87 425.31 2.21 -71.65 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.12 Total: 28.12 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.99 Total: -6.05 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -4.34 Total: -114.96 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -1.59 Total: -26.71 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -73.87 2.21 -71.65 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724739792.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.935 kcal (2) G-P(sol) polarization free energy of solvation -73.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds