Wall clock time and date at job start Tue Mar 31 2020 22:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 114.00460 * 2 1 4 4 C 1.53000 * 109.47621 * 149.99672 * 3 2 1 5 5 C 1.52997 * 109.47060 * 59.99980 * 4 3 2 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 3 7 7 C 1.53002 * 109.47628 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.46833 * 295.00207 * 7 6 5 9 9 O 1.21286 * 120.00498 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99820 * 179.97438 * 8 7 6 11 11 C 1.47019 * 125.64653 * 0.03201 * 10 8 7 12 12 C 1.54329 * 107.26958 * 178.90238 * 11 10 8 13 13 C 1.55160 * 102.94004 * 337.80365 * 12 11 10 14 14 H 1.08997 * 111.00283 * 277.39106 * 13 12 11 15 15 C 1.52997 * 111.00235 * 153.58058 * 13 12 11 16 16 C 1.52995 * 109.47483 * 66.44929 * 15 13 12 17 17 N 1.46501 * 109.47294 * 179.97438 * 16 15 13 18 18 C 1.36939 * 120.00157 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00095 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00096 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99863 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99910 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46992 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47162 * 120.00264 * 22 20 18 25 25 H 1.48501 * 109.46849 * 239.99769 * 22 20 18 26 26 C 1.47423 * 125.64552 * 179.71381 * 10 8 7 27 27 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 28 28 C 1.52997 * 109.47452 * 59.99536 * 27 6 5 29 29 H 1.08998 * 109.47530 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47250 * 300.00585 * 1 2 3 31 31 H 1.09007 * 109.47137 * 60.00098 * 1 2 3 32 32 H 1.09004 * 109.47340 * 29.99721 * 3 2 1 33 33 H 1.09002 * 109.47398 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47194 * 300.00330 * 4 3 2 35 35 H 1.08996 * 109.47853 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 37 37 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 38 38 H 1.09000 * 109.46791 * 55.00346 * 7 6 5 39 39 H 1.08998 * 109.47254 * 175.00241 * 7 6 5 40 40 H 1.09007 * 109.87923 * 298.31335 * 11 10 8 41 41 H 1.08994 * 109.88736 * 59.33011 * 11 10 8 42 42 H 1.09004 * 110.72017 * 96.16715 * 12 11 10 43 43 H 1.08999 * 110.71962 * 219.43890 * 12 11 10 44 44 H 1.09006 * 109.47110 * 186.45362 * 15 13 12 45 45 H 1.09010 * 109.46986 * 306.44825 * 15 13 12 46 46 H 1.08998 * 109.47356 * 299.99650 * 16 15 13 47 47 H 1.09004 * 109.46770 * 60.00256 * 16 15 13 48 48 H 0.97004 * 119.99870 * 0.02562 * 17 16 15 49 49 H 0.97003 * 119.99487 * 180.02562 * 21 20 18 50 50 H 1.08998 * 110.37208 * 323.00663 * 26 10 8 51 51 H 1.09009 * 110.36560 * 85.33450 * 26 10 8 52 52 H 1.09002 * 109.46935 * 299.99411 * 27 6 5 53 53 H 1.09001 * 109.46812 * 179.97438 * 27 6 5 54 54 H 1.08993 * 109.47194 * 179.97438 * 28 27 6 55 55 H 1.09002 * 109.46695 * 59.99734 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2632 0.7213 5 6 4.2927 0.2891 0.0001 6 6 4.5002 0.7549 -1.4424 7 6 5.4335 -0.2195 -2.1638 8 6 6.7992 -0.1703 -1.5286 9 8 7.0059 0.5714 -0.5915 10 7 7.7910 -0.9506 -2.0019 11 6 7.6790 -1.8905 -3.1269 12 6 9.0665 -2.5371 -3.3235 13 6 10.0249 -1.5103 -2.6642 14 1 10.2611 -0.6986 -3.3522 15 6 11.3009 -2.1923 -2.1666 16 6 12.1026 -2.7094 -3.3627 17 7 13.3247 -3.3618 -2.8862 18 6 14.2049 -3.9056 -3.7833 19 1 13.9985 -3.8531 -4.8420 20 6 15.3626 -4.5243 -3.3317 21 7 15.6140 -4.5887 -2.0414 22 14 16.5637 -5.2654 -4.5555 23 1 16.0531 -5.0625 -5.9351 24 1 17.8858 -4.6040 -4.4141 25 1 16.7068 -6.7195 -4.2899 26 6 9.1695 -0.9981 -1.4815 27 6 3.1515 0.7972 -2.1637 28 6 2.2177 1.7713 -1.4425 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.3450 1.9994 0.5138 33 1 3.8021 2.2591 0.7217 34 1 3.2111 0.9313 1.7490 35 1 5.2534 0.2587 0.5142 36 1 3.8493 -0.7066 0.0001 37 1 4.9436 1.7507 -1.4424 38 1 5.0331 -1.2304 -2.0869 39 1 5.5109 0.0617 -3.2140 40 1 6.9413 -2.6590 -2.8958 41 1 7.3859 -1.3549 -4.0297 42 1 9.1200 -3.4982 -2.8121 43 1 9.2925 -2.6501 -4.3838 44 1 11.9026 -1.4746 -1.6088 45 1 11.0371 -3.0274 -1.5176 46 1 11.5010 -3.4271 -3.9204 47 1 12.3663 -1.8742 -4.0116 48 1 13.5100 -3.4093 -1.9352 49 1 16.4232 -5.0207 -1.7259 50 1 9.4957 -0.0028 -1.1799 51 1 9.2343 -1.6902 -0.6418 52 1 2.7081 -0.1986 -2.1637 53 1 3.2993 1.1295 -3.1912 54 1 1.2571 1.8017 -1.9566 55 1 2.6612 2.7670 -1.4425 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724739794.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:08 Heat of formation + Delta-G solvation = -119.202969 kcal Electronic energy + Delta-G solvation = -29448.783015 eV Core-core repulsion = 25483.796300 eV Total energy + Delta-G solvation = -3964.986714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.34382 -40.23083 -38.93660 -37.11634 -36.76190 -34.56066 -33.10001 -32.40782 -31.65652 -30.56189 -29.32290 -27.81188 -27.08848 -25.59797 -24.01165 -23.60240 -23.18743 -22.27288 -21.21061 -20.54614 -19.99249 -19.11906 -18.06030 -17.28202 -17.19619 -16.90225 -16.69635 -16.34211 -16.22824 -15.88876 -15.39085 -15.26119 -15.15786 -14.96190 -14.77214 -14.43912 -14.25334 -13.99538 -13.77213 -13.60957 -13.33140 -13.15154 -13.08707 -12.92598 -12.85125 -12.77854 -12.74313 -12.52501 -12.33763 -12.12113 -12.06283 -11.98077 -11.95389 -11.63139 -11.54150 -11.48275 -11.42427 -11.23359 -11.15790 -10.92011 -10.60272 -10.29596 -9.61881 -8.98842 -7.94769 -5.23774 1.48251 1.49248 1.59449 1.66282 2.01759 2.56961 2.93528 3.39140 3.40770 3.63659 3.74018 3.76506 3.80163 3.86505 3.94689 4.16928 4.19961 4.25193 4.32778 4.37218 4.40685 4.48150 4.48412 4.54447 4.57458 4.61649 4.63419 4.65512 4.66120 4.72870 4.80116 4.82228 4.86338 4.88364 4.89920 4.94668 4.99918 5.07721 5.11569 5.16137 5.19092 5.24580 5.29683 5.34701 5.37586 5.39442 5.47837 5.51152 5.53006 5.62541 6.28055 6.37268 6.57414 7.19412 7.33733 8.11152 8.32912 9.29292 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.037678 B = 0.001524 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.953654 B =18372.444669 C =18544.386573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.088 3.912 4 C -0.114 4.114 5 C -0.110 4.110 6 C -0.066 4.066 7 C -0.124 4.124 8 C 0.519 3.481 9 O -0.582 6.582 10 N -0.622 5.622 11 C 0.101 3.899 12 C -0.125 4.125 13 C -0.084 4.084 14 H 0.088 0.912 15 C -0.103 4.103 16 C 0.154 3.846 17 N -0.751 5.751 18 C -0.245 4.245 19 H 0.078 0.922 20 C -0.079 4.079 21 N -0.972 5.972 22 Si 0.975 3.025 23 H -0.264 1.264 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.110 3.890 27 C -0.102 4.102 28 C -0.139 4.139 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.031 0.969 47 H 0.018 0.982 48 H 0.372 0.628 49 H 0.251 0.749 50 H 0.062 0.938 51 H 0.061 0.939 52 H 0.067 0.933 53 H 0.075 0.925 54 H 0.074 0.926 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.956 12.157 -1.392 37.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C 0.030 3.970 4 C -0.152 4.152 5 C -0.148 4.148 6 C -0.085 4.085 7 C -0.163 4.163 8 C 0.310 3.690 9 O -0.462 6.462 10 N -0.356 5.356 11 C -0.021 4.021 12 C -0.163 4.163 13 C -0.104 4.104 14 H 0.107 0.893 15 C -0.141 4.141 16 C 0.028 3.972 17 N -0.394 5.394 18 C -0.376 4.376 19 H 0.096 0.904 20 C -0.271 4.271 21 N -0.623 5.623 22 Si 0.804 3.196 23 H -0.188 1.188 24 H -0.221 1.221 25 H -0.220 1.220 26 C -0.013 4.013 27 C -0.140 4.140 28 C -0.176 4.176 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.125 0.875 39 H 0.134 0.866 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.049 0.951 47 H 0.036 0.964 48 H 0.204 0.796 49 H 0.059 0.941 50 H 0.081 0.919 51 H 0.079 0.921 52 H 0.085 0.915 53 H 0.093 0.907 54 H 0.092 0.908 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -34.784 12.386 -1.073 36.939 hybrid contribution 1.181 -0.298 0.337 1.264 sum -33.603 12.088 -0.736 35.718 Atomic orbital electron populations 1.22908 0.80355 1.03354 1.00497 1.87912 1.20525 1.28354 1.95156 1.22173 0.94312 0.84494 0.95994 1.21603 0.94361 1.00309 0.98908 1.21495 0.98694 0.98859 0.95704 1.20871 0.94908 0.98210 0.94539 1.21759 0.89707 1.03178 1.01669 1.21086 0.86804 0.78203 0.82883 1.90656 1.83585 1.41473 1.30489 1.48717 1.10596 1.41604 1.34641 1.22260 0.98521 0.92188 0.89104 1.22744 0.92570 0.98168 1.02782 1.22117 0.93380 0.98476 0.96411 0.89337 1.21493 0.95284 0.99663 0.97646 1.20801 0.86566 0.94505 0.95340 1.42664 1.22269 1.68400 1.06029 1.19717 0.99802 1.27776 0.90352 0.90385 1.25610 1.00710 1.03035 0.97709 1.69835 1.27763 1.50823 1.13844 0.85050 0.78540 0.77314 0.78721 1.18776 1.22148 1.22011 1.22131 0.81454 1.00948 0.96735 1.21423 0.93448 1.00337 0.98742 1.21999 1.00439 0.99603 0.95574 0.89153 0.93672 0.93214 0.91374 0.90649 0.92190 0.93045 0.92521 0.92030 0.87490 0.86630 0.89553 0.89023 0.90628 0.88451 0.92599 0.92028 0.95105 0.96385 0.79644 0.94055 0.91942 0.92078 0.91470 0.90671 0.90780 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 113.37 1.23 1.47 16 2 O -0.40 -6.23 9.00 -148.98 -1.34 -7.57 16 3 C 0.09 1.18 2.92 30.60 0.09 1.27 16 4 C -0.11 -1.92 5.66 30.59 0.17 -1.74 16 5 C -0.11 -2.18 4.80 30.59 0.15 -2.03 16 6 C -0.07 -1.08 1.84 -10.79 -0.02 -1.10 16 7 C -0.12 -1.84 4.37 29.85 0.13 -1.71 16 8 C 0.52 12.07 7.57 87.66 0.66 12.74 16 9 O -0.58 -18.28 14.22 -3.05 -0.04 -18.32 16 10 N -0.62 -13.34 3.33 -812.22 -2.70 -16.04 16 11 C 0.10 1.49 6.49 86.73 0.56 2.06 16 12 C -0.12 -2.30 5.60 31.79 0.18 -2.12 16 13 C -0.08 -1.96 3.06 -9.48 -0.03 -1.99 16 14 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 15 C -0.10 -3.15 4.84 30.59 0.15 -3.00 16 16 C 0.15 5.91 6.11 86.38 0.53 6.44 16 17 N -0.75 -38.49 5.60 -343.46 -1.92 -40.42 16 18 C -0.24 -13.74 9.99 84.03 0.84 -12.90 16 19 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 21 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 22 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 26 C 0.11 2.72 6.37 86.78 0.55 3.28 16 27 C -0.10 -1.21 5.06 30.60 0.15 -1.06 16 28 C -0.14 -1.53 5.63 30.59 0.17 -1.35 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.04 0.36 8.08 -2.39 -0.02 0.34 16 31 H 0.05 0.36 7.87 -2.38 -0.02 0.34 16 32 H 0.07 0.74 7.79 -2.39 -0.02 0.72 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 1.33 5.95 -2.39 -0.01 1.31 16 36 H 0.06 1.17 7.68 -2.39 -0.02 1.15 16 37 H 0.06 1.19 7.96 -2.39 -0.02 1.17 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.50 8.01 -2.38 -0.02 1.48 16 43 H 0.10 1.60 8.13 -2.39 -0.02 1.58 16 44 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 45 H 0.06 1.94 8.11 -2.38 -0.02 1.92 16 46 H 0.03 1.13 7.51 -2.39 -0.02 1.12 16 47 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.37 20.41 7.67 -92.71 -0.71 19.70 16 49 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 50 H 0.06 1.71 8.04 -2.39 -0.02 1.69 16 51 H 0.06 1.59 8.03 -2.38 -0.02 1.57 16 52 H 0.07 0.87 7.68 -2.39 -0.02 0.85 16 53 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 54 H 0.07 0.65 7.87 -2.39 -0.02 0.64 16 55 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -72.44 422.93 2.41 -70.03 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.12 Total: 29.90 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 5.98 Total: -5.86 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -4.34 Total: -116.40 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -1.38 Total: -25.89 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -72.44 2.41 -70.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724739794.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.173 kcal (2) G-P(sol) polarization free energy of solvation -72.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds