Wall clock time and date at job start Tue Mar 31 2020 22:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00134 * 2 1 4 4 H 1.08996 * 109.47285 * 30.00016 * 3 2 1 5 5 C 1.50702 * 109.47151 * 270.00089 * 3 2 1 6 6 O 1.21278 * 120.00136 * 354.99813 * 5 3 2 7 7 N 1.34776 * 120.00106 * 174.99949 * 5 3 2 8 8 C 1.46935 * 120.63124 * 354.79607 * 7 5 3 9 9 C 1.53185 * 108.77550 * 233.58752 * 8 7 5 10 10 C 1.53038 * 109.34025 * 305.34799 * 9 8 7 11 11 C 1.53102 * 109.50532 * 61.35190 * 10 9 8 12 12 C 1.46929 * 120.63440 * 174.77432 * 7 5 3 13 13 H 1.09002 * 109.58743 * 246.20171 * 12 7 5 14 14 C 1.53003 * 109.58343 * 6.62531 * 12 7 5 15 15 N 1.46496 * 109.47003 * 181.65207 * 14 12 7 16 16 C 1.36936 * 120.00314 * 185.62421 * 15 14 12 17 17 H 1.08005 * 119.99506 * 0.02562 * 16 15 14 18 18 C 1.38807 * 120.00443 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00110 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00076 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47043 * 89.99952 * 20 18 16 22 22 H 1.48500 * 109.46782 * 210.00007 * 20 18 16 23 23 H 1.48495 * 109.46822 * 330.00022 * 20 18 16 24 24 C 1.52998 * 109.47366 * 150.00021 * 3 2 1 25 25 C 1.53004 * 109.47036 * 59.99848 * 24 3 2 26 26 C 1.52998 * 109.47036 * 180.02562 * 25 24 3 27 27 C 1.52999 * 109.47355 * 60.00302 * 26 25 24 28 28 C 1.52995 * 109.46673 * 300.00014 * 27 26 25 29 29 C 1.52996 * 109.47604 * 59.99948 * 28 27 26 30 30 H 1.08998 * 109.47122 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47311 * 300.00245 * 1 2 3 32 32 H 1.09002 * 109.47298 * 59.99838 * 1 2 3 33 33 H 1.09000 * 109.58266 * 113.79826 * 8 7 5 34 34 H 1.09000 * 109.69780 * 353.44540 * 8 7 5 35 35 H 1.08999 * 109.49930 * 65.31691 * 9 8 7 36 36 H 1.09006 * 109.49632 * 185.37950 * 9 8 7 37 37 H 1.09003 * 109.46038 * 181.40213 * 10 9 8 38 38 H 1.09000 * 109.46214 * 301.36154 * 10 9 8 39 39 H 1.09000 * 109.49179 * 178.70395 * 11 10 9 40 40 H 1.08995 * 109.52052 * 58.62429 * 11 10 9 41 41 H 1.09000 * 109.47018 * 301.65669 * 14 12 7 42 42 H 1.08996 * 109.46873 * 61.65135 * 14 12 7 43 43 H 0.97000 * 119.99852 * 5.62947 * 15 14 12 44 44 H 0.97000 * 120.00309 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.47676 * 180.02562 * 24 3 2 46 46 H 1.08994 * 109.47492 * 300.00439 * 25 24 3 47 47 H 1.09005 * 109.47158 * 60.00566 * 25 24 3 48 48 H 1.09000 * 109.47676 * 300.00305 * 26 25 24 49 49 H 1.09008 * 109.47015 * 180.02562 * 26 25 24 50 50 H 1.08999 * 109.47310 * 179.97438 * 27 26 25 51 51 H 1.09000 * 109.46726 * 59.99421 * 27 26 25 52 52 H 1.08994 * 109.47416 * 299.99399 * 28 27 26 53 53 H 1.09005 * 109.47030 * 179.97438 * 28 27 26 54 54 H 1.09000 * 109.47665 * 179.97438 * 29 28 27 55 55 H 1.09006 * 109.47120 * 59.99674 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2145 1.7643 -1.4208 6 8 1.9791 1.0106 -2.3413 7 7 2.6588 3.0124 -1.6686 8 6 2.8400 3.9740 -0.5724 9 6 2.0676 5.2539 -0.9066 10 6 2.5130 5.7717 -2.2761 11 6 2.1977 4.7233 -3.3464 12 6 2.9718 3.4373 -3.0399 13 1 4.0418 3.6247 -3.1292 14 6 2.5562 2.3416 -4.0237 15 7 2.9051 2.7509 -5.3863 16 6 2.5246 1.9793 -6.4517 17 1 1.9668 1.0692 -6.2873 18 6 2.8557 2.3668 -7.7428 19 7 3.5358 3.4756 -7.9431 20 14 2.3359 1.3145 -9.1961 21 1 1.0000 1.7541 -9.6728 22 1 3.3260 1.4618 -10.2930 23 1 2.2685 -0.1086 -8.7777 24 6 3.3589 1.2633 0.7212 25 6 4.2927 0.2892 0.0000 26 6 5.6411 0.2465 0.7216 27 6 5.4333 -0.2197 2.1639 28 6 4.4995 0.7543 2.8851 29 6 3.1510 0.7970 2.1635 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 3.8994 4.2051 -0.4606 34 1 2.4587 3.5488 0.3560 35 1 0.9992 5.0388 -0.9289 36 1 2.2707 6.0099 -0.1481 37 1 1.9826 6.6961 -2.5049 38 1 3.5859 5.9633 -2.2606 39 1 2.4940 5.1017 -4.3247 40 1 1.1283 4.5129 -3.3463 41 1 3.0766 1.4160 -3.7777 42 1 1.4800 2.1822 -3.9565 43 1 3.4058 3.5685 -5.5339 44 1 3.7675 3.7463 -8.8453 45 1 3.8021 2.2591 0.7217 46 1 3.8494 -0.7065 -0.0001 47 1 4.4405 0.6211 -1.0277 48 1 6.0847 1.2422 0.7220 49 1 6.3066 -0.4471 0.2074 50 1 6.3940 -0.2506 2.6778 51 1 4.9897 -1.2154 2.1634 52 1 4.9430 1.7499 2.8855 53 1 4.3510 0.4219 3.9125 54 1 2.4856 1.4906 2.6776 55 1 2.7074 -0.1987 2.1632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724779978.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:14 Heat of formation + Delta-G solvation = -96.745482 kcal Electronic energy + Delta-G solvation = -32438.737475 eV Core-core repulsion = 28474.724590 eV Total energy + Delta-G solvation = -3964.012884 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.00670 -39.85114 -38.54789 -37.71187 -36.63459 -34.34295 -33.73511 -32.62158 -31.60304 -31.40122 -28.56067 -27.72494 -26.90700 -25.56255 -24.86846 -23.53359 -22.87465 -22.65490 -21.59517 -20.57838 -20.18810 -19.16637 -18.04690 -17.68868 -17.26073 -16.69521 -16.54058 -16.08761 -15.79929 -15.59345 -15.46808 -15.28012 -15.09002 -14.98602 -14.85259 -14.64638 -14.45055 -14.26540 -14.05754 -13.93693 -13.53240 -13.14105 -13.07841 -12.97917 -12.89303 -12.76196 -12.75597 -12.28402 -12.22993 -12.12851 -12.02126 -11.97277 -11.94906 -11.78563 -11.59791 -11.43516 -11.25491 -11.19942 -11.06680 -10.99588 -10.88684 -9.85586 -9.57333 -8.97386 -7.99256 -5.27322 1.40761 1.43557 1.52864 1.60978 1.86960 2.52787 2.79112 3.32941 3.39614 3.61496 3.69891 3.84349 3.85585 3.89588 3.95406 4.09250 4.10727 4.11888 4.25991 4.32620 4.39303 4.40047 4.41841 4.50541 4.53454 4.57498 4.61265 4.65347 4.68368 4.71011 4.77980 4.80930 4.82049 4.94345 5.04343 5.06321 5.11487 5.17674 5.19850 5.26010 5.28764 5.30173 5.32888 5.35309 5.41383 5.42223 5.46379 5.46958 5.65755 5.66273 6.04394 6.23855 6.49148 7.25286 7.29597 8.03681 8.31894 9.24206 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012264 B = 0.003382 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.503541 B = 8277.582006 C = 8963.464936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.374 6.374 3 C 0.084 3.916 4 H 0.115 0.885 5 C 0.476 3.524 6 O -0.562 6.562 7 N -0.601 5.601 8 C 0.095 3.905 9 C -0.128 4.128 10 C -0.114 4.114 11 C -0.118 4.118 12 C 0.150 3.850 13 H 0.068 0.932 14 C 0.180 3.820 15 N -0.744 5.744 16 C -0.245 4.245 17 H 0.058 0.942 18 C -0.070 4.070 19 N -0.965 5.965 20 Si 0.973 3.027 21 H -0.283 1.283 22 H -0.286 1.286 23 H -0.278 1.278 24 C -0.074 4.074 25 C -0.109 4.109 26 C -0.116 4.116 27 C -0.118 4.118 28 C -0.114 4.114 29 C -0.105 4.105 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.020 0.980 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.016 0.984 42 H 0.005 0.995 43 H 0.373 0.627 44 H 0.254 0.746 45 H 0.108 0.892 46 H 0.049 0.951 47 H 0.024 0.976 48 H 0.070 0.930 49 H 0.051 0.949 50 H 0.071 0.929 51 H 0.052 0.948 52 H 0.074 0.926 53 H 0.076 0.924 54 H 0.086 0.914 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 2.466 30.758 30.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.291 6.291 3 C 0.023 3.977 4 H 0.132 0.868 5 C 0.265 3.735 6 O -0.440 6.440 7 N -0.336 5.336 8 C -0.026 4.026 9 C -0.166 4.166 10 C -0.152 4.152 11 C -0.157 4.157 12 C 0.046 3.954 13 H 0.086 0.914 14 C 0.055 3.945 15 N -0.389 5.389 16 C -0.377 4.377 17 H 0.076 0.924 18 C -0.262 4.262 19 N -0.616 5.616 20 Si 0.802 3.198 21 H -0.210 1.210 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.092 4.092 25 C -0.147 4.147 26 C -0.153 4.153 27 C -0.156 4.156 28 C -0.151 4.151 29 C -0.143 4.143 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.039 0.961 33 H 0.107 0.893 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.131 0.869 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.023 0.977 43 H 0.206 0.794 44 H 0.062 0.938 45 H 0.126 0.874 46 H 0.068 0.932 47 H 0.043 0.957 48 H 0.088 0.912 49 H 0.069 0.931 50 H 0.090 0.910 51 H 0.071 0.929 52 H 0.093 0.907 53 H 0.094 0.906 54 H 0.104 0.896 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.792 1.714 30.242 30.300 hybrid contribution -0.366 -0.376 -2.111 2.175 sum -1.159 1.339 28.131 28.187 Atomic orbital electron populations 1.22968 0.79907 1.03870 1.00232 1.87963 1.20981 1.25933 1.94200 1.22307 0.98476 0.86729 0.90211 0.86788 1.22167 0.76689 0.81422 0.93247 1.90824 1.50973 1.55667 1.46497 1.48287 1.65471 1.12247 1.07607 1.22278 1.02246 0.89110 0.88925 1.21935 1.00028 0.97226 0.97388 1.21539 1.02219 0.97283 0.94141 1.21819 0.99127 0.94938 0.99819 1.21218 0.98541 0.94417 0.81255 0.91430 1.21056 0.96237 0.94219 0.83021 1.42708 1.66970 1.27706 1.01537 1.19468 1.28039 1.03226 0.86975 0.92407 1.25511 1.01665 0.99378 0.99694 1.69795 1.45533 1.25450 1.20838 0.85148 0.77410 0.78208 0.79061 1.20986 1.21184 1.20289 1.21433 0.90749 1.01231 0.95812 1.21416 0.96406 0.99560 0.97281 1.21513 0.95627 1.01770 0.96415 1.21536 1.00238 0.99208 0.94584 1.21519 0.94534 1.00073 0.98997 1.21517 0.98307 1.02205 0.92256 0.88623 0.90808 0.96077 0.89284 0.86905 0.92077 0.86924 0.90640 0.90893 0.92754 0.93607 0.96625 0.97653 0.79436 0.93754 0.87394 0.93184 0.95728 0.91152 0.93054 0.91007 0.92887 0.90683 0.90555 0.89579 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.81 113.37 1.23 1.78 16 2 O -0.37 -9.85 8.54 -129.99 -1.11 -10.96 16 3 C 0.08 1.87 1.42 29.85 0.04 1.91 16 4 H 0.11 1.71 6.84 -2.39 -0.02 1.70 16 5 C 0.48 15.38 5.70 87.66 0.50 15.88 16 6 O -0.56 -25.15 11.92 15.96 0.19 -24.96 16 7 N -0.60 -16.95 2.97 -795.00 -2.36 -19.32 16 8 C 0.10 1.51 4.90 86.36 0.42 1.94 16 9 C -0.13 -1.89 6.08 30.67 0.19 -1.71 16 10 C -0.11 -2.44 5.89 30.64 0.18 -2.26 16 11 C -0.12 -3.93 5.14 30.69 0.16 -3.77 16 12 C 0.15 5.50 3.02 44.98 0.14 5.64 16 13 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 14 C 0.18 9.03 4.09 86.38 0.35 9.39 16 15 N -0.74 -42.97 5.29 -343.46 -1.82 -44.79 16 16 C -0.25 -15.49 9.99 84.03 0.84 -14.65 16 17 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 18 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 19 N -0.97 -61.82 13.06 21.65 0.28 -61.54 16 20 Si 0.97 49.78 29.55 68.60 2.03 51.80 16 21 H -0.28 -14.04 7.11 99.48 0.71 -13.34 16 22 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 24 C -0.07 -1.30 1.72 -10.79 -0.02 -1.31 16 25 C -0.11 -2.65 4.81 30.59 0.15 -2.51 16 26 C -0.12 -2.17 5.92 30.59 0.18 -1.99 16 27 C -0.12 -1.68 5.92 30.59 0.18 -1.49 16 28 C -0.11 -1.19 5.92 30.59 0.18 -1.01 16 29 C -0.11 -1.32 5.06 30.59 0.15 -1.16 16 30 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 32 H 0.02 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.09 1.15 8.13 -2.39 -0.02 1.14 16 34 H 0.11 1.10 4.99 -2.39 -0.01 1.09 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.05 2.12 7.31 -2.39 -0.02 2.10 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.02 0.89 6.31 -2.39 -0.02 0.88 16 42 H 0.01 0.30 7.16 -2.39 -0.02 0.28 16 43 H 0.37 21.84 6.91 -92.71 -0.64 21.20 16 44 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 45 H 0.11 1.46 5.79 -2.39 -0.01 1.45 16 46 H 0.05 1.42 7.68 -2.39 -0.02 1.41 16 47 H 0.02 0.77 7.22 -2.38 -0.02 0.75 16 48 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 50 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 53 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 54 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 55 H 0.06 0.95 7.68 -2.38 -0.02 0.93 16 Total: -1.00 -82.56 406.92 2.76 -79.80 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.21 Total: 29.18 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.34 Total: 0.78 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -3.90 Total: -125.65 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.92 Total: -35.92 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.03 Total: 51.80 kcal Total: -82.56 2.76 -79.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724779978.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.944 kcal (2) G-P(sol) polarization free energy of solvation -82.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds