Wall clock time and date at job start Tue Mar 31 2020 22:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 114.00031 * 2 1 4 4 H 1.09000 * 109.47635 * 20.97588 * 3 2 1 5 5 C 1.50701 * 109.47670 * 140.98046 * 3 2 1 6 6 O 1.21279 * 119.99377 * 15.67466 * 5 3 2 7 7 N 1.34770 * 120.00432 * 195.67591 * 5 3 2 8 8 C 1.46932 * 120.63134 * 354.33226 * 7 5 3 9 9 C 1.53191 * 108.77934 * 233.58827 * 8 7 5 10 10 C 1.53042 * 109.30885 * 305.36597 * 9 8 7 11 11 C 1.53039 * 109.53990 * 61.36240 * 10 9 8 12 12 C 1.46925 * 120.63234 * 174.05480 * 7 5 3 13 13 H 1.08996 * 109.58746 * 246.19926 * 12 7 5 14 14 C 1.52996 * 109.58700 * 6.62376 * 12 7 5 15 15 N 1.46494 * 109.47317 * 293.77507 * 14 12 7 16 16 C 1.36941 * 120.00063 * 186.81632 * 15 14 12 17 17 H 1.07997 * 120.00057 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99914 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99658 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99990 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47413 * 89.99832 * 20 18 16 22 22 H 1.48500 * 109.46807 * 209.99638 * 20 18 16 23 23 H 1.48497 * 109.47285 * 329.99542 * 20 18 16 24 24 C 1.53006 * 109.46965 * 260.98088 * 3 2 1 25 25 C 1.52997 * 109.46865 * 303.04104 * 24 3 2 26 26 C 1.53006 * 109.46865 * 179.97438 * 25 24 3 27 27 C 1.52995 * 109.46980 * 299.99770 * 26 25 24 28 28 C 1.53007 * 109.47110 * 60.00430 * 27 26 25 29 29 C 1.52997 * 109.46962 * 299.99548 * 28 27 26 30 30 H 1.09001 * 109.47402 * 304.58634 * 1 2 3 31 31 H 1.08998 * 109.46713 * 64.58968 * 1 2 3 32 32 H 1.09005 * 109.46977 * 184.58432 * 1 2 3 33 33 H 1.09002 * 109.58636 * 353.37595 * 8 7 5 34 34 H 1.09001 * 109.58657 * 113.65519 * 8 7 5 35 35 H 1.09003 * 109.49593 * 65.31173 * 9 8 7 36 36 H 1.08994 * 109.49951 * 185.38426 * 9 8 7 37 37 H 1.09002 * 109.45929 * 181.38428 * 10 9 8 38 38 H 1.08996 * 109.45803 * 301.35528 * 10 9 8 39 39 H 1.09005 * 109.49433 * 58.59125 * 11 10 9 40 40 H 1.09001 * 109.49722 * 178.67802 * 11 10 9 41 41 H 1.09004 * 109.46918 * 53.77206 * 14 12 7 42 42 H 1.09002 * 109.47156 * 173.76856 * 14 12 7 43 43 H 0.96996 * 119.99958 * 6.82125 * 15 14 12 44 44 H 0.96999 * 119.99814 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.46965 * 183.04210 * 24 3 2 46 46 H 1.08997 * 109.47242 * 60.00276 * 25 24 3 47 47 H 1.08999 * 109.47257 * 300.00012 * 25 24 3 48 48 H 1.09003 * 109.46976 * 180.02562 * 26 25 24 49 49 H 1.08997 * 109.46965 * 60.00106 * 26 25 24 50 50 H 1.09005 * 109.47320 * 180.02562 * 27 26 25 51 51 H 1.08997 * 109.47546 * 299.99980 * 27 26 25 52 52 H 1.09000 * 109.47228 * 59.99927 * 28 27 26 53 53 H 1.08996 * 109.46730 * 179.97438 * 28 27 26 54 54 H 1.09000 * 109.47459 * 300.00237 * 29 28 27 55 55 H 1.08994 * 109.47247 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2815 2.0277 0.3679 5 6 3.2230 1.3154 0.8945 6 8 3.7257 0.2692 1.2462 7 7 3.7490 2.4869 1.3036 8 6 3.2296 3.7612 0.7887 9 6 4.3964 4.5765 0.2223 10 6 5.4773 4.7259 1.2954 11 6 6.0009 3.3432 1.6905 12 6 4.8486 2.5142 2.2777 13 1 4.5033 2.9695 3.2059 14 6 5.3278 1.0871 2.5504 15 7 4.2665 0.3361 3.2253 16 6 4.5138 -0.9258 3.6964 17 1 5.4915 -1.3671 3.5708 18 6 3.5082 -1.6372 4.3364 19 7 3.7462 -2.8497 4.7896 20 14 1.8175 -0.8736 4.5544 21 1 0.9680 -1.2092 3.3835 22 1 1.1895 -1.4060 5.7903 23 1 1.9507 0.6014 4.6628 24 6 2.4242 1.6793 -1.4247 25 6 3.3892 0.6240 -1.9689 26 6 3.8027 0.9976 -3.3939 27 6 2.5608 1.0610 -4.2852 28 6 1.5958 2.1164 -3.7410 29 6 1.1823 1.7429 -2.3161 30 1 -0.3634 0.5833 0.8460 31 1 -0.3633 0.4410 -0.9282 32 1 -0.3633 -1.0244 0.0821 33 1 2.5025 3.5675 0.0001 34 1 2.7527 4.3150 1.5974 35 1 4.8126 4.0625 -0.6442 36 1 4.0403 5.5625 -0.0759 37 1 6.2979 5.3265 0.9030 38 1 5.0539 5.2176 2.1712 39 1 6.4021 2.8410 0.8102 40 1 6.7870 3.4518 2.4377 41 1 5.5740 0.5999 1.6068 42 1 6.2130 1.1162 3.1859 43 1 3.3885 0.7325 3.3384 44 1 3.0434 -3.3470 5.2365 45 1 2.9163 2.6518 -1.4167 46 1 2.8971 -0.3485 -1.9770 47 1 4.2737 0.5784 -1.3336 48 1 4.4898 0.2455 -3.7817 49 1 4.2946 1.9702 -3.3862 50 1 2.8554 1.3267 -5.3005 51 1 2.0689 0.0884 -4.2928 52 1 2.0877 3.0891 -3.7334 53 1 0.7113 2.1619 -4.3763 54 1 0.6904 0.7702 -2.3237 55 1 0.4945 2.4944 -1.9286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724779979.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:18 Heat of formation + Delta-G solvation = -63.194448 kcal Electronic energy + Delta-G solvation = -33640.212283 eV Core-core repulsion = 29677.654280 eV Total energy + Delta-G solvation = -3962.558003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.93137 -40.00756 -38.28702 -37.70362 -36.46346 -34.18843 -33.70156 -32.50044 -31.84200 -31.66947 -28.78669 -27.83536 -26.68695 -25.61674 -24.06704 -23.56839 -23.10257 -22.48997 -21.53785 -20.70418 -20.19609 -19.46557 -17.92089 -17.53046 -17.15821 -16.63924 -16.53376 -16.02487 -15.84263 -15.69920 -15.58972 -15.27930 -15.13467 -14.90123 -14.77427 -14.62953 -14.30906 -14.15965 -13.89604 -13.83471 -13.69131 -13.40968 -13.09564 -13.01139 -12.95048 -12.82284 -12.67624 -12.42699 -12.22708 -12.03465 -11.99590 -11.91228 -11.84583 -11.72764 -11.48389 -11.46189 -11.37234 -11.13231 -11.00001 -10.93716 -10.59225 -9.68238 -9.55498 -8.84359 -7.97712 -5.18786 1.22140 1.34429 1.36640 1.87763 1.94427 2.49563 2.96479 3.35353 3.49815 3.61150 3.65625 3.77868 3.85178 3.92270 4.02740 4.05600 4.11924 4.29191 4.29821 4.31108 4.32163 4.37298 4.38250 4.47655 4.49858 4.54030 4.61414 4.64221 4.64765 4.71651 4.75672 4.79984 4.84447 4.97421 5.02047 5.03281 5.13317 5.16579 5.16653 5.24133 5.26071 5.30041 5.31715 5.32831 5.38322 5.44059 5.53413 5.61076 5.75127 5.80149 6.15554 6.25658 6.64486 7.14355 7.56276 7.93407 8.11432 9.26223 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010237 B = 0.005451 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.624160 B = 5135.422282 C = 6666.214445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.389 6.389 3 C 0.077 3.923 4 H 0.097 0.903 5 C 0.459 3.541 6 O -0.492 6.492 7 N -0.615 5.615 8 C 0.094 3.906 9 C -0.127 4.127 10 C -0.112 4.112 11 C -0.119 4.119 12 C 0.144 3.856 13 H 0.071 0.929 14 C 0.168 3.832 15 N -0.716 5.716 16 C -0.196 4.196 17 H 0.045 0.955 18 C -0.073 4.073 19 N -0.994 5.994 20 Si 0.957 3.043 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.263 1.263 24 C -0.086 4.086 25 C -0.103 4.103 26 C -0.112 4.112 27 C -0.118 4.118 28 C -0.110 4.110 29 C -0.116 4.116 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.357 0.643 44 H 0.253 0.747 45 H 0.103 0.897 46 H 0.041 0.959 47 H 0.027 0.973 48 H 0.051 0.949 49 H 0.072 0.928 50 H 0.075 0.925 51 H 0.049 0.951 52 H 0.076 0.924 53 H 0.076 0.924 54 H 0.058 0.942 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.167 24.179 -19.724 31.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.307 6.307 3 C 0.016 3.984 4 H 0.115 0.885 5 C 0.244 3.756 6 O -0.362 6.362 7 N -0.354 5.354 8 C -0.027 4.027 9 C -0.165 4.165 10 C -0.149 4.149 11 C -0.158 4.158 12 C 0.041 3.959 13 H 0.089 0.911 14 C 0.042 3.958 15 N -0.360 5.360 16 C -0.328 4.328 17 H 0.063 0.937 18 C -0.263 4.263 19 N -0.647 5.647 20 Si 0.786 3.214 21 H -0.214 1.214 22 H -0.220 1.220 23 H -0.188 1.188 24 C -0.105 4.105 25 C -0.141 4.141 26 C -0.150 4.150 27 C -0.156 4.156 28 C -0.148 4.148 29 C -0.154 4.154 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.190 0.810 44 H 0.061 0.939 45 H 0.121 0.879 46 H 0.060 0.940 47 H 0.046 0.954 48 H 0.070 0.930 49 H 0.091 0.909 50 H 0.093 0.907 51 H 0.068 0.932 52 H 0.095 0.905 53 H 0.095 0.905 54 H 0.076 0.924 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.652 23.243 -19.508 30.866 hybrid contribution -0.898 -0.833 0.800 1.464 sum -6.551 22.409 -18.708 29.918 Atomic orbital electron populations 1.23182 0.79852 1.03264 1.01500 1.88066 1.20930 1.26837 1.94883 1.22243 0.93838 0.86254 0.96089 0.88516 1.21130 0.87162 0.84407 0.82873 1.91188 1.60326 1.33300 1.51414 1.48041 1.36353 1.06160 1.44812 1.22151 0.97488 0.83289 0.99786 1.21903 0.95356 1.01074 0.98184 1.21488 0.99147 0.94901 0.99397 1.21924 0.96281 0.96522 1.01071 1.21503 0.87985 0.95051 0.91365 0.91098 1.20836 0.90201 0.90121 0.94603 1.42538 1.10806 1.14777 1.67897 1.18964 0.96547 0.91800 1.25464 0.93714 1.25307 1.01541 0.96869 1.02584 1.69889 1.33984 1.13134 1.47741 0.85344 0.81317 0.78287 0.76423 1.21445 1.21961 1.18828 1.21625 0.97859 0.99740 0.91284 1.21331 0.97665 0.98487 0.96646 1.21496 0.98090 1.01594 0.93775 1.21541 0.95682 0.99417 0.98955 1.21488 0.99428 0.98935 0.94910 1.21726 0.95923 1.02166 0.95538 0.93882 0.90309 0.90255 0.88294 0.90363 0.91946 0.87704 0.89851 0.91010 0.92431 0.90197 0.96406 0.96293 0.81047 0.93866 0.87876 0.94034 0.95402 0.92981 0.90923 0.90669 0.93243 0.90520 0.90525 0.92374 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.41 113.37 1.18 1.65 16 2 O -0.39 -14.04 8.87 -130.43 -1.16 -15.20 16 3 C 0.08 2.22 1.55 29.85 0.05 2.26 16 4 H 0.10 2.20 6.84 -2.39 -0.02 2.18 16 5 C 0.46 16.83 5.14 87.66 0.45 17.28 16 6 O -0.49 -24.63 10.13 15.53 0.16 -24.47 16 7 N -0.61 -17.65 2.97 -794.23 -2.36 -20.01 16 8 C 0.09 1.59 5.64 86.36 0.49 2.08 16 9 C -0.13 -1.59 6.08 30.67 0.19 -1.40 16 10 C -0.11 -1.62 5.88 30.62 0.18 -1.44 16 11 C -0.12 -2.69 5.40 30.82 0.17 -2.53 16 12 C 0.14 4.54 2.98 45.12 0.13 4.67 16 13 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 14 C 0.17 7.52 4.88 86.38 0.42 7.94 16 15 N -0.72 -38.93 2.93 -343.46 -1.01 -39.93 16 16 C -0.20 -12.83 10.20 84.03 0.86 -11.97 16 17 H 0.04 3.21 8.06 -2.91 -0.02 3.19 16 18 C -0.07 -4.89 5.50 84.86 0.47 -4.43 16 19 N -0.99 -70.57 13.97 21.65 0.30 -70.27 16 20 Si 0.96 52.48 27.74 68.60 1.90 54.38 16 21 H -0.29 -15.81 7.11 99.48 0.71 -15.11 16 22 H -0.29 -15.70 7.11 99.48 0.71 -15.00 16 23 H -0.26 -13.16 6.52 99.48 0.65 -12.51 16 24 C -0.09 -1.85 1.64 -10.79 -0.02 -1.87 16 25 C -0.10 -2.86 4.82 30.60 0.15 -2.71 16 26 C -0.11 -2.26 5.92 30.59 0.18 -2.08 16 27 C -0.12 -1.88 5.92 30.59 0.18 -1.70 16 28 C -0.11 -1.36 5.92 30.60 0.18 -1.18 16 29 C -0.12 -1.82 4.26 30.59 0.13 -1.69 16 30 H 0.04 1.07 8.01 -2.39 -0.02 1.05 16 31 H 0.08 1.48 5.67 -2.39 -0.01 1.47 16 32 H 0.08 2.15 8.14 -2.38 -0.02 2.14 16 33 H 0.10 1.33 4.35 -2.39 -0.01 1.32 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.02 0.90 6.56 -2.38 -0.02 0.89 16 42 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.36 18.96 4.55 -92.71 -0.42 18.54 16 44 H 0.25 17.05 8.31 -92.71 -0.77 16.28 16 45 H 0.10 1.76 6.01 -2.39 -0.01 1.74 16 46 H 0.04 1.38 7.60 -2.39 -0.02 1.37 16 47 H 0.03 0.95 7.24 -2.39 -0.02 0.94 16 48 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 51 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 54 H 0.06 1.10 5.99 -2.39 -0.01 1.08 16 55 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -89.47 397.07 3.60 -85.87 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.38 Total: 26.74 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.38 Total: 2.89 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -3.06 Total: -130.21 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -1.00 Total: -39.67 kcal Atomic # 14 Polarization: 52.48 SS G_CDS: 1.90 Total: 54.38 kcal Total: -89.47 3.60 -85.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724779979.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.676 kcal (2) G-P(sol) polarization free energy of solvation -89.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds