Wall clock time and date at job start Tue Mar 31 2020 22:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00137 * 2 1 4 4 C 1.52999 * 109.47318 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47267 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47235 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47188 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99993 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00077 * 180.02562 * 7 6 5 10 10 C 1.46923 * 120.64261 * 180.02562 * 9 7 6 11 11 C 1.53188 * 108.77243 * 126.33983 * 10 9 7 12 12 C 1.53045 * 109.33727 * 54.63466 * 11 10 9 13 13 C 1.53034 * 109.43574 * 58.70442 * 12 11 10 14 14 C 1.53196 * 109.33186 * 181.23109 * 13 12 11 15 15 N 1.46927 * 108.78315 * 305.37634 * 14 13 12 16 16 C 1.36940 * 120.64513 * 233.61770 * 15 14 13 17 17 H 1.08002 * 119.99833 * 152.32970 * 16 15 14 18 18 C 1.38815 * 119.99739 * 332.33198 * 16 15 14 19 19 N 1.31614 * 120.00186 * 342.63920 * 18 16 15 20 20 Si 1.86799 * 119.99662 * 162.64359 * 18 16 15 21 21 H 1.48506 * 109.47046 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47087 * 299.99488 * 20 18 16 23 23 H 1.48499 * 109.47618 * 59.99640 * 20 18 16 24 24 C 1.46926 * 118.71219 * 53.89441 * 15 14 13 25 25 C 1.53042 * 109.39446 * 178.72793 * 12 11 10 26 26 C 1.53027 * 109.54837 * 298.69715 * 12 11 10 27 27 C 1.46939 * 120.64117 * 359.97438 * 9 7 6 28 28 H 1.09000 * 109.47115 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47056 * 299.99995 * 1 2 3 30 30 H 1.09001 * 109.47335 * 60.00037 * 1 2 3 31 31 H 1.08996 * 109.47362 * 59.99973 * 3 2 1 32 32 H 1.09006 * 109.46971 * 299.99861 * 3 2 1 33 33 H 1.09003 * 109.47454 * 59.99810 * 4 3 2 34 34 H 1.09003 * 109.47260 * 299.99818 * 4 3 2 35 35 H 1.09007 * 109.46819 * 60.00210 * 5 4 3 36 36 H 1.08994 * 109.47400 * 300.00204 * 5 4 3 37 37 H 1.09003 * 109.47016 * 60.00432 * 6 5 4 38 38 H 1.08994 * 109.47547 * 300.00670 * 6 5 4 39 39 H 1.09001 * 109.58551 * 6.55984 * 10 9 7 40 40 H 1.08996 * 109.58835 * 246.12819 * 10 9 7 41 41 H 1.09000 * 109.49841 * 294.67617 * 11 10 9 42 42 H 1.09000 * 109.49231 * 174.59769 * 11 10 9 43 43 H 1.08996 * 109.49476 * 61.27916 * 13 12 11 44 44 H 1.08997 * 109.49541 * 301.19008 * 13 12 11 45 45 H 1.09007 * 109.58023 * 185.58573 * 14 13 12 46 46 H 1.08998 * 109.70151 * 65.24016 * 14 13 12 47 47 H 0.97001 * 120.00232 * 179.97438 * 19 18 16 48 48 H 1.09001 * 109.58755 * 65.87962 * 24 15 14 49 49 H 1.08999 * 109.58862 * 186.31412 * 24 15 14 50 50 H 1.08997 * 109.49807 * 298.68619 * 25 12 11 51 51 H 1.09005 * 109.49364 * 58.77461 * 25 12 11 52 52 H 1.09003 * 109.49473 * 181.25800 * 26 12 11 53 53 H 1.09007 * 109.48953 * 301.33493 * 26 12 11 54 54 H 1.09002 * 109.58272 * 353.44657 * 27 9 7 55 55 H 1.08998 * 109.58247 * 113.72506 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5824 -0.0013 6 6 5.6830 2.4616 -0.0013 7 6 6.2959 3.8383 -0.0026 8 8 5.5831 4.8194 -0.0029 9 7 7.6364 3.9791 -0.0033 10 6 8.2490 5.3146 -0.0040 11 6 9.2363 5.4046 1.1638 12 6 10.2398 4.2530 1.0689 13 6 10.9790 4.3306 -0.2688 14 6 11.9608 3.1594 -0.3744 15 7 12.8403 3.1717 0.8025 16 6 14.2019 3.1668 0.6564 17 1 14.8281 3.6090 1.4172 18 6 14.7771 2.5935 -0.4694 19 7 14.0772 1.7675 -1.2178 20 14 16.5445 2.9944 -0.9220 21 1 16.9179 2.2600 -2.1576 22 1 16.6765 4.4549 -1.1559 23 1 17.4441 2.5875 0.1872 24 6 12.2306 3.1831 2.1392 25 6 11.2461 4.3599 2.2170 26 6 9.4978 2.9181 1.1645 27 6 8.5133 2.8001 -0.0023 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8568 0.6439 -0.8908 34 1 3.8575 0.6436 0.8891 35 1 3.8365 3.1235 0.8888 36 1 3.8358 3.1231 -0.8912 37 1 6.0046 1.9203 -0.8911 38 1 6.0047 1.9210 0.8888 39 1 7.4741 6.0721 0.1135 40 1 8.7785 5.4732 -0.9433 41 1 8.6926 5.3365 2.1060 42 1 9.7679 6.3551 1.1182 43 1 11.5271 5.2709 -0.3275 44 1 10.2595 4.2769 -1.0857 45 1 12.5595 3.2650 -1.2792 46 1 11.4095 2.2197 -0.4088 47 1 14.4791 1.3672 -2.0047 48 1 11.6986 2.2464 2.3062 49 1 13.0074 3.3042 2.8942 50 1 11.7920 5.2999 2.1360 51 1 10.7165 4.3272 3.1691 52 1 10.2155 2.0989 1.1193 53 1 8.9518 2.8721 2.1068 54 1 7.9127 1.8982 0.1162 55 1 9.0625 2.7525 -0.9427 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725014961.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:14 Heat of formation + Delta-G solvation = -97.264540 kcal Electronic energy + Delta-G solvation = -30674.154019 eV Core-core repulsion = 26710.118626 eV Total energy + Delta-G solvation = -3964.035393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.67765 -40.06567 -38.91444 -37.34522 -35.71947 -35.12084 -33.14725 -32.16640 -31.53270 -30.77719 -29.41329 -27.52775 -26.64458 -25.22971 -24.56092 -24.05592 -23.49631 -22.32138 -21.71627 -20.32889 -19.18587 -18.41971 -17.82008 -17.31676 -17.24087 -16.85474 -16.81163 -16.55546 -15.84294 -15.79734 -15.54644 -15.42796 -15.22722 -14.98216 -14.82923 -14.66498 -14.38192 -14.09865 -13.61266 -13.51955 -13.22457 -13.18077 -12.91513 -12.84884 -12.80093 -12.60585 -12.50382 -12.41209 -12.30194 -12.28182 -12.09787 -11.96458 -11.86886 -11.73465 -11.63014 -11.58131 -11.15095 -11.03034 -10.90115 -10.71338 -10.61127 -10.44410 -9.54665 -8.58412 -7.83439 -5.26561 1.47046 1.49248 1.55397 1.66389 2.04559 2.53374 2.83293 3.30105 3.57893 3.75329 3.81791 3.84467 3.92317 3.97690 3.98758 4.19375 4.25762 4.31906 4.36339 4.39335 4.42898 4.51371 4.53555 4.55126 4.61508 4.66751 4.68369 4.72457 4.77402 4.78431 4.82937 4.84799 4.86761 4.87848 4.93631 5.00980 5.06339 5.09812 5.10847 5.19713 5.30242 5.37661 5.38978 5.42406 5.47441 5.48014 5.60104 5.64828 5.71219 5.90715 6.23966 6.43759 6.47514 7.20045 7.20746 7.94042 8.43954 9.21439 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019397 B = 0.002111 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.199069 B =13263.387911 C =13959.307079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.057 3.943 4 C -0.113 4.113 5 C -0.093 4.093 6 C -0.136 4.136 7 C 0.510 3.490 8 O -0.588 6.588 9 N -0.606 5.606 10 C 0.111 3.889 11 C -0.111 4.111 12 C -0.043 4.043 13 C -0.118 4.118 14 C 0.181 3.819 15 N -0.608 5.608 16 C -0.261 4.261 17 H 0.060 0.940 18 C -0.048 4.048 19 N -0.930 5.930 20 Si 0.960 3.040 21 H -0.294 1.294 22 H -0.282 1.282 23 H -0.277 1.277 24 C 0.141 3.859 25 C -0.111 4.111 26 C -0.119 4.119 27 C 0.108 3.892 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.010 0.990 47 H 0.249 0.751 48 H 0.023 0.977 49 H 0.043 0.957 50 H 0.049 0.951 51 H 0.075 0.925 52 H 0.068 0.932 53 H 0.073 0.927 54 H 0.110 0.890 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.772 0.309 3.549 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.019 4.019 4 C -0.150 4.150 5 C -0.131 4.131 6 C -0.175 4.175 7 C 0.301 3.699 8 O -0.470 6.470 9 N -0.338 5.338 10 C -0.011 4.011 11 C -0.149 4.149 12 C -0.044 4.044 13 C -0.157 4.157 14 C 0.055 3.945 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.078 0.922 18 C -0.243 4.243 19 N -0.576 5.576 20 Si 0.788 3.212 21 H -0.220 1.220 22 H -0.209 1.209 23 H -0.203 1.203 24 C 0.016 3.984 25 C -0.150 4.150 26 C -0.157 4.157 27 C -0.014 4.014 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.028 0.972 47 H 0.058 0.942 48 H 0.041 0.959 49 H 0.062 0.938 50 H 0.068 0.932 51 H 0.093 0.907 52 H 0.087 0.913 53 H 0.092 0.908 54 H 0.128 0.872 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.961 0.564 3.420 23.221 hybrid contribution 1.256 0.372 -0.499 1.402 sum -21.705 0.936 2.921 21.920 Atomic orbital electron populations 1.22914 0.79693 1.03759 1.00755 1.87826 1.21358 1.29021 1.95602 1.22621 0.94392 0.84192 1.00735 1.21462 0.92850 0.96885 1.03816 1.21129 0.92948 0.96198 1.02801 1.21740 0.96403 0.93023 1.06340 1.21271 0.81478 0.92551 0.74636 1.90647 1.61308 1.42482 1.52521 1.48235 1.05565 1.07757 1.72219 1.21568 0.96027 0.84545 0.98963 1.21878 0.96119 0.98673 0.98235 1.20336 0.93930 0.95111 0.94978 1.22111 0.97666 0.99015 0.96900 1.20575 0.90273 0.93481 0.90135 1.44276 1.01746 1.86060 1.01115 1.19431 0.83745 1.29996 1.06014 0.92202 1.25669 1.01090 0.97164 1.00415 1.70148 1.38068 1.31187 1.18202 0.85461 0.81017 0.77549 0.77133 1.22047 1.20850 1.20301 1.21153 0.94645 0.95760 0.86838 1.21990 0.96634 0.98561 0.97827 1.21921 0.97601 0.97579 0.98601 1.21878 0.92464 0.87852 0.99183 0.88587 0.93289 0.93342 0.92806 0.92893 0.90694 0.90579 0.91968 0.92080 0.86972 0.86750 0.90167 0.91429 0.91371 0.90617 0.94053 0.91709 0.93837 0.97216 0.94218 0.95878 0.93798 0.93248 0.90689 0.91308 0.90800 0.87198 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.49 10.70 -148.98 -1.59 -9.08 16 3 C 0.06 0.85 5.94 71.98 0.43 1.28 16 4 C -0.11 -1.59 5.58 30.59 0.17 -1.42 16 5 C -0.09 -1.51 4.50 30.59 0.14 -1.37 16 6 C -0.14 -2.17 4.05 29.85 0.12 -2.05 16 7 C 0.51 12.22 7.70 87.66 0.67 12.90 16 8 O -0.59 -18.33 15.40 -3.03 -0.05 -18.37 16 9 N -0.61 -14.18 2.97 -819.03 -2.43 -16.61 16 10 C 0.11 2.75 5.97 86.36 0.52 3.27 16 11 C -0.11 -2.69 4.90 30.67 0.15 -2.54 16 12 C -0.04 -1.23 0.51 -52.13 -0.03 -1.26 16 13 C -0.12 -4.08 4.15 30.67 0.13 -3.96 16 14 C 0.18 8.14 4.84 86.36 0.42 8.56 16 15 N -0.61 -29.26 2.99 -698.23 -2.09 -31.34 16 16 C -0.26 -14.18 9.59 84.03 0.81 -13.37 16 17 H 0.06 3.21 7.89 -2.91 -0.02 3.19 16 18 C -0.05 -2.63 4.91 84.86 0.42 -2.21 16 19 N -0.93 -53.68 11.19 21.65 0.24 -53.43 16 20 Si 0.96 44.58 29.59 68.60 2.03 46.61 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.14 5.52 6.07 86.51 0.53 6.05 16 25 C -0.11 -3.44 4.92 30.82 0.15 -3.29 16 26 C -0.12 -3.04 4.14 30.64 0.13 -2.91 16 27 C 0.11 2.38 5.87 86.34 0.51 2.88 16 28 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.13 8.10 -2.38 -0.02 1.11 16 36 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.11 1.45 7.94 -2.39 -0.02 1.44 16 38 H 0.11 1.43 7.69 -2.39 -0.02 1.42 16 39 H 0.08 2.11 7.01 -2.39 -0.02 2.09 16 40 H 0.07 1.69 6.67 -2.39 -0.02 1.68 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 2.04 4.99 -2.39 -0.01 2.03 16 45 H 0.04 2.31 6.04 -2.38 -0.01 2.29 16 46 H 0.01 0.46 6.74 -2.39 -0.02 0.44 16 47 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 48 H 0.02 0.89 6.66 -2.39 -0.02 0.88 16 49 H 0.04 1.74 7.93 -2.39 -0.02 1.72 16 50 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 52 H 0.07 2.11 4.98 -2.39 -0.01 2.10 16 53 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 54 H 0.11 1.78 5.94 -2.39 -0.01 1.77 16 55 H 0.07 1.65 6.74 -2.39 -0.02 1.64 16 Total: -1.00 -67.22 406.34 3.45 -63.77 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.85 Total: 16.38 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 6.50 Total: 2.09 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -4.28 Total: -101.39 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -1.64 Total: -27.45 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -67.22 3.45 -63.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725014961.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.499 kcal (2) G-P(sol) polarization free energy of solvation -67.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds