Wall clock time and date at job start Tue Mar 31 2020 22:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36943 * 119.99876 * 2 1 4 4 H 1.07999 * 119.99967 * 202.99544 * 3 2 1 5 5 C 1.38811 * 119.99906 * 22.99811 * 3 2 1 6 6 N 1.31621 * 120.00144 * 11.62787 * 5 3 2 7 7 Si 1.86796 * 119.99925 * 191.63607 * 5 3 2 8 8 H 1.48503 * 109.47348 * 89.99931 * 7 5 3 9 9 H 1.48502 * 109.47400 * 209.99625 * 7 5 3 10 10 H 1.48502 * 109.47393 * 329.99826 * 7 5 3 11 11 C 1.46492 * 120.00245 * 180.02562 * 2 1 3 12 12 C 1.53043 * 109.45765 * 300.00026 * 11 2 1 13 13 C 1.53198 * 109.31074 * 181.38664 * 12 11 2 14 14 N 1.46925 * 108.89199 * 305.28844 * 13 12 11 15 15 C 1.34770 * 120.63278 * 233.68322 * 14 13 12 16 16 O 1.21287 * 120.00055 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00233 * 180.02562 * 15 14 13 18 18 C 1.53005 * 109.47520 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47361 * 180.02562 * 18 17 15 20 20 C 1.52998 * 109.47114 * 180.02562 * 19 18 17 21 21 C 1.53178 * 109.54202 * 294.55553 * 20 19 18 22 22 C 1.53098 * 109.16576 * 183.15375 * 21 20 19 23 23 O 1.42904 * 109.41140 * 57.60414 * 22 21 20 24 24 C 1.42903 * 114.10163 * 298.84607 * 23 22 21 25 25 C 1.53086 * 109.41645 * 61.15707 * 24 23 22 26 26 C 1.47206 * 118.55347 * 53.54208 * 14 13 12 27 27 C 1.53047 * 109.46216 * 60.06444 * 11 2 1 28 28 H 1.09005 * 109.46932 * 273.84846 * 1 2 3 29 29 H 1.09005 * 109.47429 * 33.84863 * 1 2 3 30 30 H 1.09002 * 109.47075 * 153.84854 * 1 2 3 31 31 H 0.97001 * 119.99971 * 179.97438 * 6 5 3 32 32 H 1.08995 * 109.45358 * 180.02562 * 11 2 1 33 33 H 1.08996 * 109.49909 * 61.43603 * 12 11 2 34 34 H 1.09001 * 109.52593 * 301.34943 * 12 11 2 35 35 H 1.08995 * 109.58575 * 65.15202 * 13 12 11 36 36 H 1.09000 * 109.58292 * 185.43582 * 13 12 11 37 37 H 1.09002 * 109.47351 * 299.99886 * 17 15 14 38 38 H 1.08999 * 109.46983 * 60.00002 * 17 15 14 39 39 H 1.09002 * 109.46723 * 300.00280 * 18 17 15 40 40 H 1.08999 * 109.46983 * 60.00012 * 18 17 15 41 41 H 1.09003 * 109.46811 * 299.99905 * 19 18 17 42 42 H 1.08999 * 109.47178 * 59.99990 * 19 18 17 43 43 H 1.08999 * 109.54192 * 54.81794 * 20 19 18 44 44 H 1.08997 * 109.52073 * 303.05764 * 21 20 19 45 45 H 1.08994 * 109.52493 * 63.24621 * 21 20 19 46 46 H 1.09002 * 109.47440 * 297.62714 * 22 21 20 47 47 H 1.08994 * 109.48233 * 177.58764 * 22 21 20 48 48 H 1.09006 * 109.48099 * 301.17336 * 24 23 22 49 49 H 1.08995 * 109.48998 * 181.14951 * 24 23 22 50 50 H 1.09006 * 109.52723 * 182.48792 * 25 24 23 51 51 H 1.08998 * 109.52212 * 62.29803 * 25 24 23 52 52 H 1.08996 * 109.53157 * 186.67364 * 26 14 13 53 53 H 1.09004 * 109.67457 * 66.37063 * 26 14 13 54 54 H 1.09004 * 109.49598 * 298.57123 * 27 11 2 55 55 H 1.09001 * 109.49599 * 58.66474 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1653 1.2232 -0.3654 5 6 1.5383 2.3403 0.4697 6 7 0.3978 2.2623 1.1219 7 14 2.3342 4.0045 0.1758 8 1 1.8463 4.5666 -1.1092 9 1 1.9796 4.9257 1.2853 10 1 3.8094 3.8444 0.1177 11 6 2.1975 -1.2686 -0.0006 12 6 1.8276 -2.0715 1.2488 13 6 2.6213 -3.3817 1.2624 14 7 2.3854 -4.0940 -0.0008 15 6 1.9585 -5.3723 0.0009 16 8 1.7650 -5.9455 1.0521 17 6 1.7217 -6.0894 -1.3031 18 6 1.2454 -7.5160 -1.0216 19 6 1.0056 -8.2442 -2.3456 20 6 0.5287 -9.6705 -2.0640 21 6 1.6481 -10.4587 -1.3769 22 6 1.1906 -11.9051 -1.1704 23 8 0.8419 -12.4777 -2.4324 24 6 -0.2314 -11.8105 -3.0995 25 6 0.1690 -10.3604 -3.3834 26 6 2.6225 -3.3799 -1.2661 27 6 1.8289 -2.0697 -1.2514 28 1 -0.3633 0.0690 1.0254 29 1 -0.3634 0.8535 -0.5724 30 1 -0.3633 -0.9225 -0.4529 31 1 -0.0292 3.0689 1.4505 32 1 3.2690 -1.0691 0.0000 33 1 0.7604 -2.2927 1.2363 34 1 2.0684 -1.4910 2.1394 35 1 3.6842 -3.1639 1.3662 36 1 2.2917 -3.9999 2.0974 37 1 0.9617 -5.5589 -1.8768 38 1 2.6501 -6.1227 -1.8733 39 1 2.0057 -8.0463 -0.4481 40 1 0.3172 -7.4831 -0.4512 41 1 0.2455 -7.7140 -2.9193 42 1 1.9341 -8.2771 -2.9156 43 1 -0.3481 -9.6407 -1.4171 44 1 2.5404 -10.4448 -2.0027 45 1 1.8723 -10.0063 -0.4110 46 1 0.3223 -11.9211 -0.5117 47 1 1.9990 -12.4814 -0.7207 48 1 -1.1183 -11.8253 -2.4660 49 1 -0.4474 -12.3186 -4.0392 50 1 -0.6645 -9.8375 -3.8524 51 1 1.0315 -10.3445 -4.0497 52 1 2.2920 -3.9980 -2.1008 53 1 3.6854 -3.1622 -1.3710 54 1 0.7616 -2.2909 -1.2403 55 1 2.0710 -1.4877 -2.1406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725420721.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:55 Heat of formation + Delta-G solvation = -104.260839 kcal Electronic energy + Delta-G solvation = -29945.311575 eV Core-core repulsion = 25980.972800 eV Total energy + Delta-G solvation = -3964.338775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.22585 -40.35022 -39.00647 -36.87661 -36.59802 -34.07123 -33.58286 -32.09040 -31.91718 -31.44368 -28.92281 -28.03783 -26.44207 -25.12877 -24.42607 -24.02474 -23.51804 -22.11249 -21.02106 -20.88107 -19.64176 -18.75695 -18.06548 -17.17101 -17.00918 -16.95531 -16.82539 -16.64793 -15.93612 -15.72702 -15.54605 -15.23889 -15.11623 -14.97061 -14.72204 -14.63320 -14.41086 -14.04364 -13.73315 -13.65649 -13.24076 -13.17047 -13.13208 -12.82292 -12.74039 -12.66035 -12.60917 -12.38808 -12.32101 -12.19538 -12.18275 -12.05895 -11.82016 -11.79268 -11.59671 -11.56483 -11.23225 -11.14727 -11.11856 -10.76611 -10.60389 -10.37927 -9.63143 -8.76011 -7.81010 -5.29526 1.47323 1.47879 1.56712 1.67592 2.06966 2.51400 2.99983 3.32463 3.50761 3.63723 3.76693 3.80323 3.89134 3.95388 4.11816 4.14180 4.17670 4.19824 4.24061 4.30756 4.36225 4.40274 4.52904 4.53467 4.58391 4.65078 4.71338 4.74440 4.78143 4.80305 4.83253 4.84627 4.88637 4.92286 4.97725 5.01043 5.04160 5.10234 5.14674 5.17033 5.22494 5.25357 5.32585 5.38057 5.47687 5.51465 5.55842 5.61882 5.67974 5.72411 6.29199 6.34750 6.49788 7.16730 7.21760 7.89789 8.34405 9.22334 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.032069 B = 0.001741 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.920523 B =16077.350514 C =16351.096634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.611 5.611 3 C -0.258 4.258 4 H 0.075 0.925 5 C -0.058 4.058 6 N -0.943 5.943 7 Si 0.969 3.031 8 H -0.286 1.286 9 H -0.300 1.300 10 H -0.266 1.266 11 C 0.172 3.828 12 C -0.131 4.131 13 C 0.122 3.878 14 N -0.610 5.610 15 C 0.506 3.494 16 O -0.593 6.593 17 C -0.133 4.133 18 C -0.100 4.100 19 C -0.104 4.104 20 C -0.091 4.091 21 C -0.150 4.150 22 C 0.055 3.945 23 O -0.407 6.407 24 C 0.053 3.947 25 C -0.147 4.147 26 C 0.116 3.884 27 C -0.137 4.137 28 H -0.006 1.006 29 H 0.015 0.985 30 H 0.026 0.974 31 H 0.246 0.754 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.051 0.949 47 H 0.099 0.901 48 H 0.052 0.948 49 H 0.103 0.897 50 H 0.086 0.914 51 H 0.071 0.929 52 H 0.117 0.883 53 H 0.087 0.913 54 H 0.052 0.948 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.677 -25.961 -11.543 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.334 5.334 3 C -0.388 4.388 4 H 0.093 0.907 5 C -0.252 4.252 6 N -0.590 5.590 7 Si 0.797 3.203 8 H -0.213 1.213 9 H -0.226 1.226 10 H -0.191 1.191 11 C 0.065 3.935 12 C -0.172 4.172 13 C -0.001 4.001 14 N -0.343 5.343 15 C 0.297 3.703 16 O -0.474 6.474 17 C -0.172 4.172 18 C -0.138 4.138 19 C -0.142 4.142 20 C -0.109 4.109 21 C -0.188 4.188 22 C -0.021 4.021 23 O -0.326 6.326 24 C -0.023 4.023 25 C -0.184 4.184 26 C -0.006 4.006 27 C -0.177 4.177 28 H 0.012 0.988 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.129 0.871 38 H 0.138 0.862 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.117 0.883 48 H 0.070 0.930 49 H 0.121 0.879 50 H 0.104 0.896 51 H 0.089 0.911 52 H 0.135 0.865 53 H 0.105 0.895 54 H 0.071 0.929 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.589 -26.271 -11.022 28.607 hybrid contribution -0.273 1.802 0.839 2.006 sum 2.316 -24.470 -10.183 26.605 Atomic orbital electron populations 1.20386 0.83359 0.95496 0.96849 1.44204 1.01770 1.01444 1.85948 1.19617 0.98524 0.86620 1.34032 0.90697 1.25824 0.98613 1.01992 0.98806 1.70252 1.20124 1.27411 1.41200 0.85234 0.78534 0.79867 0.76620 1.21342 1.22648 1.19067 1.20547 0.95465 0.84685 0.92754 1.22280 0.99195 0.95646 1.00043 1.21428 0.99855 0.91974 0.86883 1.48385 1.65819 1.12117 1.07974 1.21495 0.75075 0.81203 0.92541 1.90652 1.53917 1.67150 1.35710 1.21780 1.05324 0.96458 0.93633 1.21320 1.01114 0.93431 0.97915 1.21572 1.02281 0.94032 0.96303 1.21207 0.98041 0.94937 0.96764 1.22265 0.99093 0.95622 1.01798 1.22686 1.00273 0.94116 0.85017 1.87893 1.54307 1.55963 1.34453 1.22741 0.88860 0.92992 0.97730 1.22218 1.02826 0.95891 0.97485 1.21984 1.00984 0.92554 0.85123 1.22300 1.00159 0.96114 0.99096 0.98783 0.96644 0.95607 0.94504 0.91912 0.94165 0.93257 0.90328 0.90989 0.87081 0.86204 0.92285 0.93277 0.90668 0.90700 0.91637 0.91139 0.90808 0.93087 0.88334 0.92984 0.87891 0.89587 0.91067 0.86456 0.89479 0.92891 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.15 8.03 127.77 1.03 10.18 16 2 N -0.61 -29.68 2.81 -702.62 -1.97 -31.65 16 3 C -0.26 -13.78 9.59 84.03 0.81 -12.98 16 4 H 0.08 3.82 7.82 -2.91 -0.02 3.80 16 5 C -0.06 -3.22 5.12 84.86 0.43 -2.78 16 6 N -0.94 -56.24 10.64 21.65 0.23 -56.01 16 7 Si 0.97 44.70 29.57 68.60 2.03 46.73 16 8 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 9 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 11 C 0.17 6.45 2.55 45.02 0.11 6.57 16 12 C -0.13 -4.80 5.34 30.67 0.16 -4.63 16 13 C 0.12 3.65 6.42 86.36 0.55 4.21 16 14 N -0.61 -15.51 2.98 -818.20 -2.44 -17.95 16 15 C 0.51 13.03 7.70 87.66 0.68 13.71 16 16 O -0.59 -20.33 15.39 -3.05 -0.05 -20.37 16 17 C -0.13 -2.07 4.06 29.85 0.12 -1.95 16 18 C -0.10 -1.63 4.27 30.60 0.13 -1.50 16 19 C -0.10 -1.17 4.69 30.59 0.14 -1.03 16 20 C -0.09 -1.11 2.27 -10.68 -0.02 -1.14 16 21 C -0.15 -2.00 5.10 30.69 0.16 -1.84 16 22 C 0.06 0.78 6.84 72.02 0.49 1.27 16 23 O -0.41 -6.93 10.77 -148.98 -1.60 -8.53 16 24 C 0.05 0.64 6.84 72.01 0.49 1.13 16 25 C -0.15 -1.55 5.42 30.68 0.17 -1.38 16 26 C 0.12 2.30 6.35 86.31 0.55 2.85 16 27 C -0.14 -3.89 5.32 30.67 0.16 -3.72 16 28 H -0.01 -0.34 7.42 -2.38 -0.02 -0.36 16 29 H 0.01 0.81 7.22 -2.38 -0.02 0.79 16 30 H 0.03 1.10 6.46 -2.39 -0.02 1.08 16 31 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.06 2.34 7.86 -2.39 -0.02 2.32 16 33 H 0.04 1.59 7.72 -2.39 -0.02 1.57 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 2.35 7.00 -2.39 -0.02 2.33 16 37 H 0.11 1.39 7.70 -2.39 -0.02 1.38 16 38 H 0.12 1.24 7.96 -2.39 -0.02 1.22 16 39 H 0.06 1.11 6.62 -2.39 -0.02 1.09 16 40 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 41 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 1.05 6.75 -2.39 -0.02 1.03 16 46 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 49 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 51 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.12 1.50 5.97 -2.39 -0.01 1.48 16 53 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 54 H 0.05 1.61 6.72 -2.39 -0.02 1.59 16 55 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -70.93 413.02 3.19 -67.74 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.83 Total: 13.09 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 6.17 Total: 6.95 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -4.19 Total: -105.62 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -1.65 Total: -28.91 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.93 3.19 -67.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725420721.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.519 kcal (2) G-P(sol) polarization free energy of solvation -70.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds