Wall clock time and date at job start Tue Mar 31 2020 22:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 119.99751 * 2 1 4 4 H 1.08005 * 119.99710 * 202.92857 * 3 2 1 5 5 C 1.38815 * 120.00374 * 22.92877 * 3 2 1 6 6 N 1.31619 * 119.99447 * 13.11180 * 5 3 2 7 7 Si 1.86796 * 119.99884 * 193.11028 * 5 3 2 8 8 H 1.48504 * 109.46855 * 90.00313 * 7 5 3 9 9 H 1.48503 * 109.46989 * 209.99451 * 7 5 3 10 10 H 1.48494 * 109.47153 * 329.99956 * 7 5 3 11 11 C 1.46491 * 120.00001 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47129 * 90.00139 * 11 2 1 13 13 O 1.42897 * 109.46884 * 65.00246 * 12 11 2 14 14 C 1.42900 * 113.99831 * 179.97438 * 13 12 11 15 15 C 1.53009 * 109.46994 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.46684 * 65.00265 * 15 14 13 17 17 C 1.34780 * 119.99646 * 179.97438 * 16 15 14 18 18 O 1.21274 * 119.99947 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99551 * 179.72841 * 17 16 15 20 20 C 1.50916 * 117.30446 * 249.88434 * 19 17 16 21 21 H 1.09007 * 117.54126 * 359.14589 * 20 19 17 22 22 C 1.54607 * 123.58534 * 158.04923 * 20 19 17 23 23 C 1.54817 * 102.34971 * 124.49534 * 22 20 19 24 24 C 1.49149 * 109.53578 * 56.42649 * 23 22 20 25 25 C 1.51242 * 120.89442 * 277.99233 * 24 23 22 26 26 C 1.54377 * 111.07806 * 324.69891 * 25 24 23 27 27 C 1.53268 * 108.74228 * 101.08829 * 26 25 24 28 28 C 1.48767 * 112.79760 * 295.63265 * 27 26 25 29 29 H 1.08999 * 111.87341 * 287.10408 * 28 27 26 30 30 H 1.08998 * 109.47808 * 275.13030 * 1 2 3 31 31 H 1.09001 * 109.46876 * 35.13009 * 1 2 3 32 32 H 1.09006 * 109.46951 * 155.12648 * 1 2 3 33 33 H 0.97000 * 119.99235 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.47517 * 330.00343 * 11 2 1 35 35 H 1.08998 * 109.47240 * 210.00402 * 11 2 1 36 36 H 1.08999 * 109.47172 * 305.00015 * 12 11 2 37 37 H 1.09007 * 109.46872 * 184.99648 * 12 11 2 38 38 H 1.08995 * 109.47111 * 60.00423 * 14 13 12 39 39 H 1.08990 * 109.47527 * 299.99647 * 14 13 12 40 40 H 1.08996 * 109.47536 * 305.00625 * 15 14 13 41 41 H 1.08999 * 109.46944 * 184.99696 * 15 14 13 42 42 H 0.96997 * 119.99981 * 0.02562 * 16 15 14 43 43 H 1.08997 * 115.43897 * 34.68724 * 19 17 16 44 44 H 1.08994 * 110.86097 * 242.75646 * 22 20 19 45 45 H 1.08997 * 110.85560 * 6.19234 * 22 20 19 46 46 H 1.08999 * 109.46093 * 176.44717 * 23 22 20 47 47 H 1.08998 * 109.46361 * 296.42205 * 23 22 20 48 48 H 1.09002 * 107.13089 * 40.91901 * 24 23 22 49 49 H 1.08994 * 107.13266 * 155.11244 * 24 23 22 50 50 H 1.09001 * 109.15849 * 85.10809 * 25 24 23 51 51 H 1.08998 * 109.16000 * 204.34367 * 25 24 23 52 52 H 1.09000 * 109.52506 * 220.90748 * 26 25 24 53 53 H 1.09003 * 109.52494 * 341.03260 * 26 25 24 54 54 H 1.08996 * 108.19120 * 175.13407 * 27 26 25 55 55 H 1.09004 * 109.25675 * 56.86595 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1657 1.2229 -0.3644 5 6 1.5379 2.3406 0.4683 6 7 0.4116 2.2606 1.1448 7 14 2.3130 4.0079 0.1385 8 1 1.7941 4.5502 -1.1428 9 1 1.9729 4.9393 1.2440 10 1 3.7880 3.8596 0.0522 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 8 3.3210 -0.7733 -2.0809 14 6 3.6250 -1.0954 -3.4396 15 6 4.5561 -0.0291 -4.0204 16 7 5.8404 -0.0665 -3.3165 17 6 6.8229 0.7892 -3.6613 18 8 6.6437 1.5904 -4.5538 19 6 8.1419 0.7548 -2.9331 20 6 8.4654 1.9209 -2.0313 21 1 7.7348 2.7274 -1.9686 22 6 9.4835 1.8473 -0.8701 23 6 10.4583 3.0008 -1.2108 24 6 9.6971 4.2777 -1.3315 25 6 8.9729 4.6321 -2.6111 26 6 9.7536 4.1354 -3.8467 27 6 9.1031 2.8434 -4.3536 28 6 9.1982 1.7275 -3.3744 29 1 10.2112 1.3304 -3.3084 30 1 -0.3635 0.0919 1.0235 31 1 -0.3633 0.8405 -0.5914 32 1 -0.3633 -0.9324 -0.4323 33 1 -0.0160 3.0675 1.4717 34 1 1.6084 -2.0281 0.5147 35 1 3.1498 -1.1381 0.5144 36 1 1.5062 -1.7557 -1.9808 37 1 2.9182 -2.6966 -1.4426 38 1 2.7032 -1.1276 -4.0203 39 1 4.1151 -2.0680 -3.4816 40 1 4.1031 0.9547 -3.8978 41 1 4.7169 -0.2256 -5.0804 42 1 5.9838 -0.7076 -2.6028 43 1 8.4739 -0.2325 -2.6122 44 1 8.9935 2.0233 0.0874 45 1 10.0015 0.8883 -0.8684 46 1 11.2012 3.0943 -0.4187 47 1 10.9591 2.7862 -2.1548 48 1 8.9576 4.2876 -0.5308 49 1 10.3952 5.0885 -1.1234 50 1 7.9854 4.1708 -2.6027 51 1 8.8614 5.7147 -2.6709 52 1 9.7196 4.8942 -4.6285 53 1 10.7904 3.9439 -3.5699 54 1 9.6056 2.5481 -5.2746 55 1 8.0520 3.0320 -4.5723 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725435436.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:15 Heat of formation + Delta-G solvation = -59.445737 kcal Electronic energy + Delta-G solvation = -30977.700579 eV Core-core repulsion = 27015.305133 eV Total energy + Delta-G solvation = -3962.395446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.77100 -39.82128 -38.94630 -37.22157 -35.84730 -35.60358 -34.04869 -33.42273 -31.13264 -29.70451 -28.98995 -27.86302 -26.94764 -25.24513 -24.83467 -23.36944 -22.41613 -22.08231 -21.51992 -20.97620 -20.23664 -18.70065 -17.94580 -17.70240 -17.33563 -17.01471 -16.54445 -16.14003 -16.01895 -15.67961 -15.52886 -15.33911 -15.25265 -15.03368 -14.76805 -14.52373 -14.36762 -14.08522 -13.92734 -13.79975 -13.26124 -13.17408 -12.94538 -12.80035 -12.72830 -12.66432 -12.52421 -12.30714 -12.21046 -12.14107 -12.09136 -12.02080 -11.86339 -11.70834 -11.67961 -11.33444 -11.20670 -10.75201 -10.60410 -10.54489 -10.35773 -10.18181 -10.06794 -8.70895 -7.78791 -5.24048 1.38762 1.41718 1.47465 1.49224 2.21400 2.50637 2.76341 2.88337 3.35041 3.57116 3.72262 3.76474 3.84505 3.97260 3.97687 4.00415 4.10571 4.19502 4.21267 4.23301 4.37706 4.42822 4.53623 4.56414 4.58964 4.62773 4.63656 4.67598 4.69183 4.87620 4.88769 4.90881 4.91839 4.95629 4.99783 5.01454 5.12920 5.18643 5.19314 5.19911 5.26321 5.38498 5.39925 5.42064 5.43918 5.56270 5.59063 5.71679 5.71887 5.76840 6.37998 6.52526 6.57276 7.21826 7.27471 7.94588 8.35623 9.24603 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.003338 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.417200 B = 8385.867266 C = 9882.204279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.615 5.615 3 C -0.223 4.223 4 H 0.065 0.935 5 C -0.057 4.057 6 N -0.943 5.943 7 Si 0.951 3.049 8 H -0.296 1.296 9 H -0.292 1.292 10 H -0.276 1.276 11 C 0.143 3.857 12 C 0.053 3.947 13 O -0.393 6.393 14 C 0.052 3.948 15 C 0.127 3.873 16 N -0.710 5.710 17 C 0.530 3.470 18 O -0.578 6.578 19 C -0.151 4.151 20 C -0.144 4.144 21 H 0.086 0.914 22 C -0.081 4.081 23 C -0.111 4.111 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.104 4.104 27 C -0.098 4.098 28 C -0.121 4.121 29 H 0.121 0.879 30 H 0.006 0.994 31 H 0.008 0.992 32 H 0.034 0.966 33 H 0.244 0.756 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.091 0.909 42 H 0.414 0.586 43 H 0.154 0.846 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.037 0.963 49 H 0.057 0.943 50 H 0.040 0.960 51 H 0.058 0.942 52 H 0.063 0.937 53 H 0.082 0.918 54 H 0.059 0.941 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.105 -7.874 -8.704 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.338 5.338 3 C -0.354 4.354 4 H 0.083 0.917 5 C -0.251 4.251 6 N -0.592 5.592 7 Si 0.781 3.219 8 H -0.223 1.223 9 H -0.219 1.219 10 H -0.202 1.202 11 C 0.017 3.983 12 C -0.026 4.026 13 O -0.313 6.313 14 C -0.025 4.025 15 C 0.003 3.997 16 N -0.361 5.361 17 C 0.318 3.682 18 O -0.458 6.458 19 C -0.171 4.171 20 C -0.163 4.163 21 H 0.104 0.896 22 C -0.118 4.118 23 C -0.148 4.148 24 C -0.154 4.154 25 C -0.159 4.159 26 C -0.141 4.141 27 C -0.135 4.135 28 C -0.139 4.139 29 H 0.139 0.861 30 H 0.024 0.976 31 H 0.027 0.973 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.109 0.891 42 H 0.250 0.750 43 H 0.172 0.828 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.056 0.944 49 H 0.076 0.924 50 H 0.058 0.942 51 H 0.077 0.923 52 H 0.082 0.918 53 H 0.100 0.900 54 H 0.077 0.923 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 20.944 -7.011 -9.159 23.910 hybrid contribution -0.724 0.943 0.031 1.189 sum 20.220 -6.068 -9.128 23.000 Atomic orbital electron populations 1.20545 0.83007 0.95798 0.97634 1.44092 1.01905 1.01876 1.85925 1.19387 0.97861 0.86489 1.31665 0.91728 1.25562 0.98913 1.00946 0.99661 1.70197 1.20969 1.26939 1.41057 0.85493 0.78241 0.81561 0.76574 1.22339 1.21856 1.20156 1.21049 0.96096 0.87498 0.93659 1.23259 0.92380 0.91652 0.95262 1.88090 1.67558 1.50972 1.24684 1.22741 0.98086 0.97487 0.84169 1.21307 0.82979 0.98998 0.96456 1.45884 1.13185 1.38226 1.38824 1.20404 0.85624 0.79497 0.82688 1.90612 1.82524 1.39318 1.33390 1.21801 0.92955 0.99270 1.03094 1.22954 1.01173 0.97675 0.94505 0.89603 1.22031 0.94558 0.99947 0.95254 1.21273 0.97375 0.93366 1.02801 1.20364 0.99410 0.98790 0.96885 1.21646 0.98836 1.00074 0.95369 1.21775 0.99855 0.95789 0.96669 1.20368 1.01808 0.93894 0.97461 1.21027 0.96558 0.98382 0.97938 0.86143 0.97556 0.97277 0.94776 0.94632 0.90689 0.93431 0.94630 0.90884 0.91734 0.90206 0.94277 0.89081 0.74979 0.82821 0.91754 0.89049 0.90404 0.90224 0.94363 0.92396 0.94158 0.92339 0.91837 0.89951 0.92272 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.75 8.98 127.77 1.15 9.89 16 2 N -0.61 -31.03 2.90 -726.94 -2.11 -33.14 16 3 C -0.22 -12.70 9.21 84.03 0.77 -11.92 16 4 H 0.06 3.74 7.58 -2.91 -0.02 3.71 16 5 C -0.06 -3.36 5.10 84.86 0.43 -2.93 16 6 N -0.94 -57.94 10.71 21.65 0.23 -57.70 16 7 Si 0.95 48.80 29.57 68.60 2.03 50.83 16 8 H -0.30 -15.29 7.11 99.48 0.71 -14.59 16 9 H -0.29 -14.80 7.11 99.48 0.71 -14.10 16 10 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 11 C 0.14 5.49 6.07 86.38 0.52 6.01 16 12 C 0.05 1.65 6.28 71.98 0.45 2.10 16 13 O -0.39 -13.51 9.53 -148.98 -1.42 -14.93 16 14 C 0.05 1.30 6.07 71.99 0.44 1.74 16 15 C 0.13 3.51 6.06 86.38 0.52 4.03 16 16 N -0.71 -18.50 5.50 -463.04 -2.55 -21.05 16 17 C 0.53 15.25 7.58 87.66 0.66 15.92 16 18 O -0.58 -20.95 13.99 -3.01 -0.04 -20.99 16 19 C -0.15 -3.19 5.91 -13.11 -0.08 -3.27 16 20 C -0.14 -3.18 4.16 -10.51 -0.04 -3.22 16 21 H 0.09 2.51 5.48 -2.38 -0.01 2.50 16 22 C -0.08 -1.32 6.19 31.76 0.20 -1.12 16 23 C -0.11 -1.63 5.43 29.99 0.16 -1.47 16 24 C -0.12 -2.19 4.44 28.79 0.13 -2.06 16 25 C -0.12 -2.68 5.38 30.49 0.16 -2.52 16 26 C -0.10 -1.98 5.68 31.15 0.18 -1.80 16 27 C -0.10 -2.24 4.99 29.34 0.15 -2.09 16 28 C -0.12 -2.39 3.70 -12.62 -0.05 -2.44 16 29 H 0.12 1.77 7.24 -2.39 -0.02 1.75 16 30 H 0.01 0.34 7.34 -2.39 -0.02 0.32 16 31 H 0.01 0.47 7.34 -2.39 -0.02 0.45 16 32 H 0.03 1.40 8.03 -2.38 -0.02 1.38 16 33 H 0.24 14.68 8.31 -92.71 -0.77 13.91 16 34 H 0.08 2.51 8.07 -2.39 -0.02 2.49 16 35 H 0.05 1.88 8.04 -2.39 -0.02 1.86 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.41 8.97 8.47 -92.71 -0.79 8.18 16 43 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 45 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.08 1.05 4.58 -2.39 -0.01 1.04 16 48 H 0.04 0.83 7.84 -2.39 -0.02 0.81 16 49 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 50 H 0.04 1.12 5.19 -2.39 -0.01 1.11 16 51 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.08 1.25 6.33 -2.39 -0.02 1.24 16 54 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 55 H 0.05 1.70 5.53 -2.38 -0.01 1.69 16 Total: -1.00 -74.30 414.08 1.98 -72.32 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.08 Total: 19.80 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 5.76 Total: 4.86 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.43 Total: -111.89 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -1.46 Total: -35.92 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Total: -74.30 1.98 -72.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725435436.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.872 kcal (2) G-P(sol) polarization free energy of solvation -74.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds