Wall clock time and date at job start Tue Mar 31 2020 22:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 120.00157 * 2 1 4 4 H 1.08004 * 120.00118 * 202.92909 * 3 2 1 5 5 C 1.38814 * 119.99918 * 22.93474 * 3 2 1 6 6 N 1.31618 * 120.00030 * 13.11872 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 193.11961 * 5 3 2 8 8 H 1.48503 * 109.46877 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47142 * 119.99578 * 7 5 3 10 10 H 1.48505 * 109.47145 * 239.99740 * 7 5 3 11 11 C 1.46501 * 119.99677 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47383 * 90.00239 * 11 2 1 13 13 O 1.42900 * 109.47480 * 64.99617 * 12 11 2 14 14 C 1.42901 * 114.00166 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46788 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.47331 * 65.00011 * 15 14 13 17 17 C 1.34771 * 120.00243 * 179.97438 * 16 15 14 18 18 O 1.21285 * 120.00265 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00050 * 179.97438 * 17 16 15 20 20 C 1.50915 * 117.30467 * 250.69841 * 19 17 16 21 21 H 1.09002 * 117.53767 * 144.81626 * 20 19 17 22 22 C 1.54603 * 123.59016 * 345.90264 * 20 19 17 23 23 C 1.54824 * 102.35459 * 235.50333 * 22 20 19 24 24 C 1.49148 * 109.53308 * 303.56850 * 23 22 20 25 25 C 1.51238 * 120.88984 * 82.01612 * 24 23 22 26 26 C 1.54372 * 111.08513 * 35.28650 * 25 24 23 27 27 C 1.54170 * 109.17788 * 259.00460 * 26 25 24 28 28 C 1.48765 * 112.50858 * 63.92109 * 27 26 25 29 29 H 1.08998 * 111.87423 * 73.56520 * 28 27 26 30 30 H 1.09000 * 109.46909 * 275.12697 * 1 2 3 31 31 H 1.08999 * 109.47140 * 155.12702 * 1 2 3 32 32 H 1.08997 * 109.46820 * 35.11921 * 1 2 3 33 33 H 0.97003 * 120.00250 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.46685 * 209.99829 * 11 2 1 35 35 H 1.09004 * 109.47307 * 329.99611 * 11 2 1 36 36 H 1.08997 * 109.47121 * 184.99988 * 12 11 2 37 37 H 1.09002 * 109.46831 * 304.99717 * 12 11 2 38 38 H 1.09003 * 109.46676 * 299.99789 * 14 13 12 39 39 H 1.08991 * 109.47357 * 60.00199 * 14 13 12 40 40 H 1.08999 * 109.46935 * 184.99444 * 15 14 13 41 41 H 1.08996 * 109.47310 * 304.99845 * 15 14 13 42 42 H 0.97007 * 119.99743 * 359.97438 * 16 15 14 43 43 H 1.09000 * 115.43295 * 35.19301 * 19 17 16 44 44 H 1.08994 * 110.85848 * 353.76776 * 22 20 19 45 45 H 1.08997 * 110.85770 * 117.24039 * 22 20 19 46 46 H 1.08996 * 109.46230 * 63.58964 * 23 22 20 47 47 H 1.08999 * 109.45925 * 183.56977 * 23 22 20 48 48 H 1.09007 * 107.12891 * 204.93328 * 24 23 22 49 49 H 1.08991 * 107.13737 * 319.08086 * 24 23 22 50 50 H 1.09000 * 109.16420 * 155.70043 * 25 24 23 51 51 H 1.09002 * 109.15665 * 274.87517 * 25 24 23 52 52 H 1.09005 * 109.51682 * 18.90871 * 26 25 24 53 53 H 1.09002 * 109.52728 * 139.02893 * 26 25 24 54 54 H 1.09001 * 108.86939 * 303.14249 * 27 26 25 55 55 H 1.09000 * 108.87928 * 184.70866 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1658 1.2228 -0.3644 5 6 1.5380 2.3405 0.4685 6 7 0.4119 2.2606 1.1451 7 14 2.3130 4.0078 0.1385 8 1 3.5665 3.8263 -0.6368 9 1 1.3670 4.8483 -0.6387 10 1 2.6218 4.6743 1.4292 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 8 3.3210 -0.7717 -2.0817 14 6 3.6240 -1.0920 -3.4410 15 6 4.5561 -0.0260 -4.0204 16 7 5.8407 -0.0659 -3.3172 17 6 6.8241 0.7891 -3.6610 18 8 6.6458 1.5914 -4.5529 19 6 8.1452 0.7484 -2.9371 20 6 8.4659 1.9004 -2.0164 21 1 9.0256 1.6785 -1.1077 22 6 7.6876 3.2362 -2.0147 23 6 8.8132 4.2757 -2.2374 24 6 9.8500 4.1231 -1.1761 25 6 10.9266 3.0669 -1.2885 26 6 11.3594 2.8691 -2.7570 27 6 10.6801 1.6046 -3.3193 28 6 9.1985 1.7286 -3.3695 29 1 8.8734 2.3922 -4.1707 30 1 -0.3633 0.0918 1.0236 31 1 -0.3633 -0.9323 -0.4322 32 1 -0.3633 0.8406 -0.5912 33 1 -0.0158 3.0674 1.4722 34 1 3.1499 -1.1386 0.5133 35 1 1.6084 -2.0287 0.5130 36 1 2.9180 -2.6954 -1.4449 37 1 1.5061 -1.7541 -1.9822 38 1 4.1138 -2.0649 -3.4844 39 1 2.7019 -1.1231 -4.0212 40 1 4.7163 -0.2211 -5.0808 41 1 4.1043 0.9581 -3.8962 42 1 5.9834 -0.7078 -2.6040 43 1 8.4801 -0.2422 -2.6295 44 1 6.9653 3.2656 -2.8304 45 1 7.1950 3.3971 -1.0558 46 1 9.2678 4.1149 -3.2149 47 1 8.3935 5.2806 -2.1929 48 1 10.3532 5.0852 -1.0782 49 1 9.3251 3.9479 -0.2371 50 1 11.7909 3.3728 -0.6990 51 1 10.5444 2.1237 -0.8981 52 1 11.0588 3.7362 -3.3452 53 1 12.4423 2.7540 -2.8053 54 1 10.9416 0.7542 -2.6895 55 1 11.0531 1.4223 -4.3271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725435440.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:20 Heat of formation + Delta-G solvation = -62.014810 kcal Electronic energy + Delta-G solvation = -30937.832884 eV Core-core repulsion = 26975.326034 eV Total energy + Delta-G solvation = -3962.506850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.76943 -39.83031 -38.95156 -37.22006 -35.84297 -35.57867 -34.07861 -33.41917 -31.11917 -29.68364 -29.02272 -27.85885 -26.99144 -25.35679 -24.83930 -23.35406 -22.41430 -22.07706 -21.59239 -20.78128 -20.19555 -18.69915 -17.99602 -17.72638 -17.41492 -17.01305 -16.74335 -16.26244 -15.87526 -15.65918 -15.56539 -15.33542 -15.21979 -15.07994 -14.77580 -14.55302 -14.40679 -14.07040 -13.81398 -13.59047 -13.35562 -13.24317 -13.01285 -12.92127 -12.73919 -12.65653 -12.52188 -12.30963 -12.20456 -12.16769 -11.99941 -11.94693 -11.86304 -11.72814 -11.68374 -11.35869 -11.08824 -10.96517 -10.69590 -10.59825 -10.36176 -10.23462 -10.07358 -8.70198 -7.78260 -5.23429 1.38755 1.42294 1.49957 1.52342 2.09235 2.51486 2.77580 2.88007 3.35778 3.57885 3.66042 3.74843 3.76912 3.93088 3.94540 4.00970 4.10191 4.19184 4.22172 4.29040 4.30498 4.42758 4.51567 4.53955 4.58978 4.61226 4.63536 4.67955 4.72156 4.80907 4.87680 4.88634 4.91022 4.92102 4.99417 5.01283 5.09576 5.11694 5.15873 5.19973 5.26303 5.36197 5.40264 5.41214 5.45021 5.50526 5.58451 5.62823 5.72181 5.77700 6.38534 6.52682 6.55654 7.22377 7.23995 7.95139 8.36169 9.25280 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.003260 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.819404 B = 8586.089243 C =10249.037875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.615 5.615 3 C -0.223 4.223 4 H 0.066 0.934 5 C -0.058 4.058 6 N -0.943 5.943 7 Si 0.951 3.049 8 H -0.278 1.278 9 H -0.296 1.296 10 H -0.290 1.290 11 C 0.143 3.857 12 C 0.053 3.947 13 O -0.393 6.393 14 C 0.052 3.948 15 C 0.127 3.873 16 N -0.708 5.708 17 C 0.534 3.466 18 O -0.586 6.586 19 C -0.149 4.149 20 C -0.137 4.137 21 H 0.142 0.858 22 C -0.101 4.101 23 C -0.107 4.107 24 C -0.116 4.116 25 C -0.115 4.115 26 C -0.112 4.112 27 C -0.078 4.078 28 C -0.129 4.129 29 H 0.077 0.923 30 H 0.006 0.994 31 H 0.034 0.966 32 H 0.008 0.992 33 H 0.244 0.756 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.039 0.961 42 H 0.415 0.585 43 H 0.152 0.848 44 H 0.040 0.960 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.048 0.952 50 H 0.073 0.927 51 H 0.069 0.931 52 H 0.058 0.942 53 H 0.082 0.918 54 H 0.075 0.925 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.487 -8.218 -8.271 24.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.338 5.338 3 C -0.354 4.354 4 H 0.083 0.917 5 C -0.252 4.252 6 N -0.592 5.592 7 Si 0.781 3.219 8 H -0.203 1.203 9 H -0.223 1.223 10 H -0.217 1.217 11 C 0.017 3.983 12 C -0.025 4.025 13 O -0.313 6.313 14 C -0.025 4.025 15 C 0.003 3.997 16 N -0.359 5.359 17 C 0.322 3.678 18 O -0.467 6.467 19 C -0.170 4.170 20 C -0.155 4.155 21 H 0.159 0.841 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.154 4.154 25 C -0.152 4.152 26 C -0.149 4.149 27 C -0.115 4.115 28 C -0.148 4.148 29 H 0.095 0.905 30 H 0.024 0.976 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.057 0.943 42 H 0.251 0.749 43 H 0.170 0.830 44 H 0.059 0.941 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.092 0.908 51 H 0.088 0.912 52 H 0.077 0.923 53 H 0.100 0.900 54 H 0.093 0.907 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 21.331 -7.363 -8.735 24.197 hybrid contribution -0.696 0.948 0.012 1.176 sum 20.635 -6.415 -8.723 23.303 Atomic orbital electron populations 1.20541 0.83015 0.95792 0.97622 1.44098 1.01899 1.01880 1.85926 1.19426 0.97858 0.86475 1.31605 0.91669 1.25568 0.98897 1.00985 0.99700 1.70204 1.20983 1.26872 1.41140 0.85427 0.77773 0.81682 0.77003 1.20282 1.22297 1.21691 1.21054 0.96104 0.87506 0.93662 1.23256 0.92382 0.91638 0.95269 1.88093 1.67568 1.51011 1.24618 1.22738 0.98073 0.97457 0.84184 1.21316 0.82892 0.99066 0.96459 1.45779 1.13174 1.37946 1.39006 1.20212 0.85888 0.79411 0.82276 1.90651 1.82999 1.39586 1.33434 1.21659 0.92841 0.99354 1.03098 1.23086 1.02798 0.93779 0.95806 0.84062 1.21983 0.96900 0.94490 1.00461 1.21195 0.95277 0.97494 1.00497 1.20351 0.96541 1.00015 0.98506 1.21629 0.97585 0.98932 0.97039 1.21980 1.00148 0.97085 0.95695 1.20375 0.90088 0.99109 1.01972 1.21160 0.94248 1.01454 0.97925 0.90457 0.97580 0.94782 0.97275 0.94658 0.93415 0.90694 0.90879 0.94626 0.90161 0.91660 0.89061 0.94281 0.74879 0.83011 0.94069 0.92437 0.91111 0.92711 0.92741 0.93354 0.90820 0.91249 0.92338 0.89981 0.90676 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.74 8.98 127.77 1.15 9.89 16 2 N -0.61 -30.98 2.90 -726.93 -2.11 -33.09 16 3 C -0.22 -12.66 9.21 84.03 0.77 -11.88 16 4 H 0.07 3.77 7.58 -2.91 -0.02 3.74 16 5 C -0.06 -3.40 5.10 84.86 0.43 -2.97 16 6 N -0.94 -57.89 10.71 21.65 0.23 -57.66 16 7 Si 0.95 48.67 29.57 68.60 2.03 50.69 16 8 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 9 H -0.30 -15.19 7.11 99.48 0.71 -14.49 16 10 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 11 C 0.14 5.46 6.07 86.38 0.52 5.99 16 12 C 0.05 1.65 6.28 71.98 0.45 2.10 16 13 O -0.39 -13.49 9.52 -148.98 -1.42 -14.90 16 14 C 0.05 1.31 6.07 71.98 0.44 1.75 16 15 C 0.13 3.54 6.06 86.38 0.52 4.06 16 16 N -0.71 -18.64 5.50 -463.06 -2.55 -21.19 16 17 C 0.53 15.64 6.86 87.66 0.60 16.24 16 18 O -0.59 -21.89 15.13 -3.05 -0.05 -21.93 16 19 C -0.15 -3.22 5.94 -13.11 -0.08 -3.29 16 20 C -0.14 -3.00 4.42 -10.30 -0.05 -3.04 16 21 H 0.14 2.54 5.48 -2.39 -0.01 2.52 16 22 C -0.10 -2.82 5.95 31.76 0.19 -2.63 16 23 C -0.11 -2.42 5.43 29.99 0.16 -2.26 16 24 C -0.12 -2.08 4.44 28.79 0.13 -1.95 16 25 C -0.11 -1.56 5.38 30.48 0.16 -1.40 16 26 C -0.11 -1.45 5.68 31.46 0.18 -1.27 16 27 C -0.08 -1.11 5.49 29.65 0.16 -0.95 16 28 C -0.13 -2.65 3.53 -12.41 -0.04 -2.70 16 29 H 0.08 2.08 6.44 -2.39 -0.02 2.06 16 30 H 0.01 0.32 7.34 -2.39 -0.02 0.31 16 31 H 0.03 1.39 8.03 -2.39 -0.02 1.38 16 32 H 0.01 0.47 7.34 -2.39 -0.02 0.45 16 33 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 34 H 0.05 1.88 8.04 -2.38 -0.02 1.86 16 35 H 0.07 2.50 8.07 -2.39 -0.02 2.49 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.41 9.02 8.47 -92.70 -0.79 8.23 16 43 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.04 1.43 6.61 -2.39 -0.02 1.41 16 45 H 0.06 1.72 8.13 -2.39 -0.02 1.70 16 46 H 0.07 1.58 4.59 -2.39 -0.01 1.56 16 47 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 48 H 0.05 0.89 8.12 -2.38 -0.02 0.87 16 49 H 0.05 0.92 7.84 -2.39 -0.02 0.91 16 50 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.07 0.91 5.22 -2.39 -0.01 0.90 16 52 H 0.06 0.88 6.33 -2.38 -0.02 0.87 16 53 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.07 0.86 8.06 -2.39 -0.02 0.84 16 55 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -74.78 415.14 1.93 -72.85 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.08 Total: 19.53 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 5.71 Total: 5.69 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -4.43 Total: -111.93 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -1.46 Total: -36.84 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.69 kcal Total: -74.78 1.93 -72.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725435440.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.838 kcal (2) G-P(sol) polarization free energy of solvation -74.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds