Wall clock time and date at job start Tue Mar 31 2020 22:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36940 * 119.99652 * 2 1 4 4 H 1.07994 * 119.99716 * 202.70573 * 3 2 1 5 5 C 1.38808 * 119.99736 * 22.71131 * 3 2 1 6 6 N 1.31615 * 120.00804 * 11.50006 * 5 3 2 7 7 Si 1.86805 * 119.99524 * 191.50247 * 5 3 2 8 8 H 1.48508 * 109.47046 * 90.00247 * 7 5 3 9 9 H 1.48498 * 109.47086 * 209.99805 * 7 5 3 10 10 H 1.48491 * 109.47262 * 329.99868 * 7 5 3 11 11 C 1.46496 * 120.00234 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47312 * 270.00081 * 11 2 1 13 13 O 1.42901 * 109.46969 * 64.99952 * 12 11 2 14 14 C 1.42905 * 113.99945 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47032 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47350 * 65.00044 * 15 14 13 17 17 C 1.34775 * 119.99924 * 180.02562 * 16 15 14 18 18 O 1.21274 * 120.00192 * 359.97438 * 17 16 15 19 19 C 1.51088 * 119.99898 * 180.02562 * 17 16 15 20 20 H 1.08400 * 114.75399 * 34.72853 * 19 17 16 21 21 C 1.52948 * 116.99688 * 179.97438 * 19 17 16 22 22 H 1.09854 * 117.11401 * 358.58247 * 21 19 17 23 23 C 1.54601 * 117.53101 * 216.71405 * 21 19 17 24 24 C 1.54506 * 105.94936 * 224.79593 * 23 21 19 25 25 C 1.52921 * 110.61026 * 106.71472 * 24 23 21 26 26 C 1.51703 * 119.17157 * 0.09110 * 25 24 23 27 27 C 1.53567 * 113.95130 * 304.36494 * 26 25 24 28 28 C 1.53941 * 108.70883 * 335.64849 * 27 26 25 29 29 C 1.51709 * 60.18175 * 107.12422 * 21 19 17 30 30 H 1.10653 * 117.56150 * 253.39736 * 29 21 19 31 31 H 1.08999 * 109.47049 * 273.91253 * 1 2 3 32 32 H 1.09001 * 109.47325 * 33.92214 * 1 2 3 33 33 H 1.08999 * 109.46605 * 153.91426 * 1 2 3 34 34 H 0.96997 * 120.00441 * 179.97438 * 6 5 3 35 35 H 1.09001 * 109.47212 * 150.00078 * 11 2 1 36 36 H 1.08999 * 109.47054 * 30.00291 * 11 2 1 37 37 H 1.08997 * 109.47190 * 304.99806 * 12 11 2 38 38 H 1.08997 * 109.46928 * 185.00013 * 12 11 2 39 39 H 1.09004 * 109.46870 * 59.99871 * 14 13 12 40 40 H 1.09004 * 109.46966 * 300.00195 * 14 13 12 41 41 H 1.09004 * 109.47041 * 305.00109 * 15 14 13 42 42 H 1.08997 * 109.46772 * 185.00479 * 15 14 13 43 43 H 0.97001 * 119.99532 * 359.97438 * 16 15 14 44 44 H 1.07100 * 112.74390 * 347.34315 * 23 21 19 45 45 H 1.09589 * 108.61003 * 108.92514 * 23 21 19 46 46 H 1.08645 * 108.76877 * 226.44672 * 24 23 21 47 47 H 1.08519 * 108.67712 * 346.62151 * 24 23 21 48 48 H 1.10590 * 105.98359 * 120.61814 * 25 24 23 49 49 H 1.08643 * 108.46960 * 233.08131 * 25 24 23 50 50 H 1.09684 * 109.36738 * 66.89654 * 26 25 24 51 51 H 1.10021 * 108.86667 * 183.37824 * 26 25 24 52 52 H 1.08600 * 110.43162 * 99.48880 * 27 26 25 53 53 H 1.10379 * 108.70363 * 216.84709 * 27 26 25 54 54 H 1.10606 * 108.19492 * 234.89676 * 28 27 26 55 55 H 1.08692 * 112.03874 * 351.92603 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1669 1.2222 -0.3610 5 6 1.5363 2.3414 0.4641 6 7 0.3917 2.2653 1.1094 7 14 2.3353 4.0046 0.1728 8 1 1.8558 4.5652 -1.1161 9 1 1.9745 4.9276 1.2787 10 1 3.8106 3.8433 0.1242 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4417 13 8 1.2061 -1.9945 2.0804 14 6 1.3325 -2.4180 3.4394 15 6 -0.0565 -2.6927 4.0192 16 7 -0.6645 -3.8246 3.3155 17 6 -1.8969 -4.2483 3.6588 18 8 -2.5025 -3.6928 4.5507 19 6 -2.5237 -5.4161 2.9334 20 1 -1.8262 -6.1870 2.6264 21 6 -3.9241 -5.8396 3.3791 22 1 -4.3737 -5.2835 4.2130 23 6 -4.2479 -7.3514 3.3773 24 6 -5.6470 -7.4851 2.7355 25 6 -5.5387 -8.0627 1.3237 26 6 -4.1697 -8.4095 0.7698 27 6 -3.1752 -7.2395 0.7875 28 6 -3.9663 -5.9189 0.7811 29 6 -3.7387 -5.1209 2.0560 30 1 -4.0645 -4.0651 1.9968 31 1 -0.3633 0.0701 1.0253 32 1 -0.3634 0.8527 -0.5735 33 1 -0.3632 -0.9230 -0.4519 34 1 -0.0368 3.0727 1.4341 35 1 3.1500 -1.1381 -0.5143 36 1 1.6086 -2.0281 -0.5148 37 1 2.9643 -0.9140 1.9811 38 1 3.0734 -2.6070 1.4425 39 1 1.8208 -1.6353 4.0200 40 1 1.9302 -3.3285 3.4821 41 1 -0.6830 -1.8092 3.8957 42 1 0.0327 -2.9294 5.0794 43 1 -0.1802 -4.2686 2.6019 44 1 -3.5144 -7.9313 2.8551 45 1 -4.3161 -7.6957 4.4154 46 1 -6.2494 -8.1520 3.3461 47 1 -6.1031 -6.5015 2.6883 48 1 -6.1306 -8.9968 1.3306 49 1 -6.0619 -7.4002 0.6398 50 1 -3.7496 -9.2488 1.3373 51 1 -4.2827 -8.7510 -0.2700 52 1 -2.5096 -7.3206 1.6418 53 1 -2.5496 -7.2929 -0.1203 54 1 -3.6136 -5.3092 -0.0717 55 1 -5.0295 -6.0812 0.6243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725435442.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:42 Heat of formation + Delta-G solvation = -58.594834 kcal Electronic energy + Delta-G solvation = -30382.991995 eV Core-core repulsion = 26420.633447 eV Total energy + Delta-G solvation = -3962.358548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54010 -39.85376 -38.97700 -37.22586 -35.90145 -35.59748 -33.41431 -33.14030 -31.13514 -29.61312 -28.65358 -28.01253 -27.82165 -25.23278 -24.78561 -23.26921 -22.17606 -22.13889 -21.46368 -21.02403 -19.64427 -18.77964 -18.13584 -17.61950 -17.40503 -16.89622 -16.73263 -16.28270 -16.10252 -15.78636 -15.53849 -15.38830 -15.18267 -15.09367 -14.83402 -14.40051 -14.09327 -14.01650 -13.82973 -13.68120 -13.15817 -13.09299 -12.97940 -12.73031 -12.70743 -12.53810 -12.49786 -12.33545 -12.29838 -12.22691 -12.02265 -11.88336 -11.79055 -11.67741 -11.61216 -11.05759 -10.98699 -10.81827 -10.72029 -10.62508 -10.48078 -10.37114 -10.11760 -8.73852 -7.78331 -5.26787 1.45743 1.47280 1.47735 1.55780 2.14104 2.52134 2.84896 2.87834 3.34705 3.61057 3.71259 3.76734 3.81477 3.90226 3.95325 4.03096 4.10102 4.15313 4.17682 4.26375 4.32333 4.44057 4.45362 4.52615 4.57305 4.58511 4.62507 4.68537 4.74751 4.82623 4.87456 4.90471 4.93684 5.00466 5.04856 5.13398 5.14847 5.18499 5.21024 5.26114 5.31450 5.36626 5.38402 5.40921 5.43860 5.51350 5.60289 5.65899 5.72300 5.82012 6.35097 6.45996 6.55040 7.18401 7.23593 7.92119 8.37742 9.24754 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.002225 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.661327 B =12582.597559 C =12944.639126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.196 3.804 2 N -0.613 5.613 3 C -0.259 4.259 4 H 0.076 0.924 5 C -0.059 4.059 6 N -0.938 5.938 7 Si 0.968 3.032 8 H -0.287 1.287 9 H -0.300 1.300 10 H -0.265 1.265 11 C 0.145 3.855 12 C 0.051 3.949 13 O -0.393 6.393 14 C 0.055 3.945 15 C 0.130 3.870 16 N -0.706 5.706 17 C 0.532 3.468 18 O -0.593 6.593 19 C -0.187 4.187 20 H 0.152 0.848 21 C -0.110 4.110 22 H 0.088 0.912 23 C -0.090 4.090 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.110 4.110 27 C -0.124 4.124 28 C -0.092 4.092 29 C -0.106 4.106 30 H 0.082 0.918 31 H -0.003 1.003 32 H 0.008 0.992 33 H 0.019 0.981 34 H 0.243 0.757 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.021 0.979 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.089 0.911 43 H 0.415 0.585 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.057 0.943 50 H 0.066 0.934 51 H 0.065 0.935 52 H 0.077 0.923 53 H 0.065 0.935 54 H 0.054 0.946 55 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.791 -26.692 1.294 27.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.336 5.336 3 C -0.390 4.390 4 H 0.094 0.906 5 C -0.253 4.253 6 N -0.585 5.585 7 Si 0.796 3.204 8 H -0.214 1.214 9 H -0.227 1.227 10 H -0.189 1.189 11 C 0.019 3.981 12 C -0.027 4.027 13 O -0.313 6.313 14 C -0.022 4.022 15 C 0.005 3.995 16 N -0.357 5.357 17 C 0.320 3.680 18 O -0.474 6.474 19 C -0.208 4.208 20 H 0.170 0.830 21 C -0.128 4.128 22 H 0.106 0.894 23 C -0.127 4.127 24 C -0.149 4.149 25 C -0.155 4.155 26 C -0.147 4.147 27 C -0.161 4.161 28 C -0.129 4.129 29 C -0.125 4.125 30 H 0.100 0.900 31 H 0.016 0.984 32 H 0.027 0.973 33 H 0.037 0.963 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.056 0.944 42 H 0.107 0.893 43 H 0.252 0.748 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.085 0.915 51 H 0.083 0.917 52 H 0.095 0.905 53 H 0.084 0.916 54 H 0.073 0.927 55 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.465 -26.151 1.858 27.003 hybrid contribution 0.614 1.722 0.196 1.838 sum -5.852 -24.430 2.054 25.205 Atomic orbital electron populations 1.20301 0.83031 0.94666 0.96881 1.44111 1.02006 1.01696 1.85836 1.19594 0.98413 0.86644 1.34308 0.90643 1.25839 0.98580 1.01968 0.98937 1.70292 1.19748 1.27085 1.41393 0.85255 0.78585 0.79958 0.76580 1.21446 1.22664 1.18904 1.21150 0.96816 0.87046 0.93115 1.23262 0.85310 0.97977 0.96190 1.87974 1.30987 1.87725 1.24612 1.22687 0.95667 0.99701 0.84126 1.21247 0.93099 0.88700 0.96412 1.45778 1.17532 1.33557 1.38874 1.20516 0.80837 0.84229 0.82426 1.90656 1.63333 1.59702 1.33756 1.22486 0.93224 0.98884 1.06176 0.83042 1.22774 0.94634 0.97937 0.97497 0.89350 1.21867 0.98325 0.91038 1.01481 1.21691 0.96526 1.00788 0.95908 1.21327 0.97177 1.00943 0.96030 1.21498 0.94386 0.97628 1.01232 1.22146 0.97586 0.93469 1.02868 1.21427 1.02260 0.95447 0.93720 1.22156 0.97508 0.99588 0.93231 0.90021 0.98447 0.97332 0.96265 0.94731 0.90819 0.92057 0.96103 0.91072 0.92809 0.89956 0.94364 0.89258 0.74825 0.88418 0.91844 0.91367 0.92426 0.92790 0.92461 0.91530 0.91675 0.90492 0.91627 0.92697 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.42 8.61 127.77 1.10 11.52 16 2 N -0.61 -31.31 2.89 -726.94 -2.10 -33.41 16 3 C -0.26 -14.34 9.67 84.03 0.81 -13.52 16 4 H 0.08 3.96 7.85 -2.91 -0.02 3.93 16 5 C -0.06 -3.37 5.12 84.86 0.43 -2.93 16 6 N -0.94 -57.99 10.62 21.65 0.23 -57.76 16 7 Si 0.97 46.04 29.57 68.60 2.03 48.06 16 8 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 9 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 10 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 11 C 0.14 5.63 6.11 86.38 0.53 6.15 16 12 C 0.05 1.79 6.28 71.98 0.45 2.25 16 13 O -0.39 -14.39 9.85 -148.98 -1.47 -15.86 16 14 C 0.06 1.57 6.07 71.98 0.44 2.00 16 15 C 0.13 3.88 6.06 86.38 0.52 4.41 16 16 N -0.71 -18.74 5.50 -462.62 -2.55 -21.28 16 17 C 0.53 15.52 7.61 87.78 0.67 16.19 16 18 O -0.59 -22.60 16.19 -3.01 -0.05 -22.65 16 19 C -0.19 -3.89 5.26 -11.52 -0.06 -3.95 16 20 H 0.15 2.26 6.08 -2.70 -0.02 2.25 16 21 C -0.11 -2.19 4.69 -10.69 -0.05 -2.24 16 22 H 0.09 2.24 7.67 -1.93 -0.01 2.23 16 23 C -0.09 -1.24 5.40 31.65 0.17 -1.07 16 24 C -0.11 -1.39 5.53 31.08 0.17 -1.21 16 25 C -0.12 -1.23 4.62 30.14 0.14 -1.09 16 26 C -0.11 -1.05 5.11 30.36 0.16 -0.89 16 27 C -0.12 -1.43 5.12 31.10 0.16 -1.27 16 28 C -0.09 -1.41 5.03 30.62 0.15 -1.26 16 29 C -0.11 -2.18 5.74 -11.59 -0.07 -2.25 16 30 H 0.08 2.11 8.28 -1.50 -0.01 2.10 16 31 H 0.00 -0.17 7.43 -2.39 -0.02 -0.19 16 32 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 33 H 0.02 0.88 7.85 -2.39 -0.02 0.87 16 34 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.07 2.62 8.03 -2.39 -0.02 2.60 16 36 H 0.06 2.16 7.87 -2.39 -0.02 2.14 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.42 8.90 8.47 -92.71 -0.79 8.12 16 44 H 0.10 1.11 3.98 -3.37 -0.01 1.09 16 45 H 0.06 0.85 8.19 -2.07 -0.02 0.83 16 46 H 0.07 0.73 8.11 -2.57 -0.02 0.71 16 47 H 0.06 0.85 7.34 -2.64 -0.02 0.84 16 48 H 0.05 0.49 8.24 -1.53 -0.01 0.48 16 49 H 0.06 0.63 6.59 -2.58 -0.02 0.61 16 50 H 0.07 0.54 7.74 -2.02 -0.02 0.52 16 51 H 0.06 0.56 8.23 -1.84 -0.02 0.55 16 52 H 0.08 0.85 3.74 -2.60 -0.01 0.84 16 53 H 0.06 0.71 8.26 -1.65 -0.01 0.70 16 54 H 0.05 0.91 8.28 -1.52 -0.01 0.90 16 55 H 0.09 1.31 4.99 -2.55 -0.01 1.30 16 Total: -1.00 -74.04 415.53 1.94 -72.10 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.11 Total: 19.95 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 5.73 Total: 10.84 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -4.42 Total: -112.45 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.52 Total: -38.51 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -74.04 1.94 -72.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725435442.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.506 kcal (2) G-P(sol) polarization free energy of solvation -74.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds