Wall clock time and date at job start Tue Mar 31 2020 22:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 120.00463 * 2 1 4 4 H 1.07995 * 120.00403 * 201.81836 * 3 2 1 5 5 C 1.38820 * 119.99713 * 21.81341 * 3 2 1 6 6 N 1.31616 * 120.00028 * 15.06407 * 5 3 2 7 7 Si 1.86801 * 119.99759 * 195.06028 * 5 3 2 8 8 H 1.48503 * 109.47010 * 94.96291 * 7 5 3 9 9 H 1.48507 * 109.46904 * 214.96184 * 7 5 3 10 10 H 1.48491 * 109.47218 * 334.96165 * 7 5 3 11 11 C 1.46505 * 119.99796 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47325 * 270.00046 * 11 2 1 13 13 O 1.42904 * 109.47242 * 65.00012 * 12 11 2 14 14 C 1.42899 * 114.00215 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46961 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47344 * 64.99967 * 15 14 13 17 17 C 1.34776 * 119.99984 * 179.97438 * 16 15 14 18 18 O 1.21284 * 120.00342 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99775 * 179.72143 * 17 16 15 20 20 C 1.53002 * 115.54616 * 153.66668 * 19 17 16 21 21 C 1.52996 * 109.47309 * 65.74458 * 20 19 17 22 22 C 1.53001 * 109.47216 * 179.97438 * 21 20 19 23 23 C 1.53003 * 109.46770 * 60.00398 * 22 21 20 24 24 C 1.53005 * 109.47065 * 299.99728 * 23 22 21 25 25 C 1.52996 * 109.47058 * 305.74364 * 20 19 17 26 26 C 1.52994 * 117.49940 * 7.96106 * 19 17 16 27 27 C 1.52997 * 117.50125 * 299.33477 * 19 17 16 28 28 H 1.08998 * 109.46932 * 275.69226 * 1 2 3 29 29 H 1.08997 * 109.46810 * 35.68597 * 1 2 3 30 30 H 1.08990 * 109.47324 * 155.69057 * 1 2 3 31 31 H 0.96995 * 119.99892 * 179.97438 * 6 5 3 32 32 H 1.09003 * 109.46505 * 150.00226 * 11 2 1 33 33 H 1.09001 * 109.46778 * 30.00633 * 11 2 1 34 34 H 1.08997 * 109.47588 * 305.00233 * 12 11 2 35 35 H 1.09000 * 109.47294 * 185.00170 * 12 11 2 36 36 H 1.08991 * 109.47169 * 60.00118 * 14 13 12 37 37 H 1.09000 * 109.46764 * 300.00047 * 14 13 12 38 38 H 1.08993 * 109.47333 * 304.99832 * 15 14 13 39 39 H 1.09005 * 109.46998 * 184.99724 * 15 14 13 40 40 H 0.96995 * 120.00125 * 0.02562 * 16 15 14 41 41 H 1.09002 * 109.47287 * 185.75059 * 20 19 17 42 42 H 1.08995 * 109.47207 * 299.99882 * 21 20 19 43 43 H 1.09003 * 109.46975 * 60.00531 * 21 20 19 44 44 H 1.09002 * 109.47643 * 300.00762 * 22 21 20 45 45 H 1.08995 * 109.47339 * 179.97438 * 22 21 20 46 46 H 1.09007 * 109.47070 * 180.02562 * 23 22 21 47 47 H 1.08995 * 109.47368 * 59.99914 * 23 22 21 48 48 H 1.09000 * 109.46942 * 299.99889 * 24 23 22 49 49 H 1.08998 * 109.47222 * 180.02562 * 24 23 22 50 50 H 1.09001 * 109.47468 * 300.00305 * 25 20 19 51 51 H 1.09003 * 109.47378 * 60.00478 * 25 20 19 52 52 H 1.08995 * 117.50196 * 359.97438 * 26 19 17 53 53 H 1.09011 * 117.50093 * 145.01975 * 26 19 17 54 54 H 1.09005 * 117.50059 * 214.97999 * 27 19 17 55 55 H 1.08995 * 117.49738 * 359.97438 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1717 1.2193 -0.3476 5 6 1.5303 2.3450 0.4467 6 7 0.4128 2.2695 1.1380 7 14 2.2827 4.0120 0.0668 8 1 1.6555 4.5707 -1.1578 9 1 2.0474 4.9330 1.2078 10 1 3.7434 3.8576 -0.1515 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7099 1.4432 13 8 1.2060 -1.9927 2.0822 14 6 1.3324 -2.4161 3.4412 15 6 -0.0566 -2.6900 4.0213 16 7 -0.6652 -3.8218 3.3177 17 6 -1.8974 -4.2455 3.6620 18 8 -2.5027 -3.6896 4.5540 19 6 -2.5260 -5.4057 2.9340 20 6 -3.5629 -6.2006 3.7302 21 6 -4.7764 -5.3135 4.0156 22 6 -5.8135 -6.1085 4.8112 23 6 -5.1974 -6.5706 6.1333 24 6 -3.9839 -7.4577 5.8480 25 6 -2.9465 -6.6622 5.0522 26 6 -1.6497 -6.1780 1.9458 27 6 -2.7550 -5.2549 1.4288 28 1 -0.3633 0.1019 1.0226 29 1 -0.3633 0.8347 -0.5995 30 1 -0.3633 -0.9364 -0.4230 31 1 -0.0198 3.0794 1.4505 32 1 3.1499 -1.1386 -0.5133 33 1 1.6084 -2.0286 -0.5130 34 1 2.9642 -0.9124 1.9820 35 1 3.0732 -2.6059 1.4449 36 1 1.8210 -1.6337 4.0216 37 1 1.9297 -3.3269 3.4838 38 1 -0.6826 -1.8064 3.8978 39 1 0.0327 -2.9269 5.0815 40 1 -0.1811 -4.2666 2.6046 41 1 -3.8763 -7.0701 3.1523 42 1 -4.4630 -4.4441 4.5935 43 1 -5.2156 -4.9847 3.0737 44 1 -6.1268 -6.9778 4.2330 45 1 -6.6778 -5.4764 5.0149 46 1 -5.9362 -7.1374 6.7000 47 1 -4.8841 -5.7014 6.7116 48 1 -4.2973 -8.3270 5.2697 49 1 -3.5452 -7.7872 6.7898 50 1 -2.0819 -7.2942 4.8490 51 1 -2.6331 -5.7928 5.6302 52 1 -0.6188 -5.8467 1.8218 53 1 -1.8118 -7.2528 1.8627 54 1 -3.6442 -5.7223 1.0056 55 1 -2.4514 -4.3163 0.9652 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725440339.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:07 Heat of formation + Delta-G solvation = -76.577323 kcal Electronic energy + Delta-G solvation = -30773.741544 eV Core-core repulsion = 26810.603216 eV Total energy + Delta-G solvation = -3963.138327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.57275 -39.37932 -38.78487 -37.33242 -37.20464 -35.60321 -33.40724 -31.58558 -31.41753 -30.86352 -29.40162 -27.82283 -25.49029 -24.82964 -23.94609 -23.79980 -22.95422 -22.50210 -22.14599 -20.71573 -20.47393 -18.77912 -17.90324 -17.62088 -17.49703 -16.91408 -16.56137 -16.06531 -16.01538 -15.57805 -15.37661 -15.24976 -15.07854 -14.94788 -14.87193 -14.71463 -14.11158 -14.07368 -13.85045 -13.40759 -13.31215 -13.17418 -13.03266 -13.00569 -12.73919 -12.54921 -12.49434 -12.41318 -12.33519 -12.21245 -12.01197 -11.95163 -11.80913 -11.77483 -11.68599 -11.38548 -11.35579 -10.85213 -10.62972 -10.62291 -10.50156 -10.36269 -10.09605 -8.75308 -7.78448 -5.26019 1.45493 1.47124 1.53812 1.55910 2.17769 2.52203 2.83467 2.90617 3.33610 3.51082 3.65106 3.75835 3.82651 3.85766 3.94753 4.05102 4.08952 4.14807 4.27189 4.43221 4.48967 4.51558 4.52327 4.57889 4.61791 4.67638 4.67776 4.68784 4.69691 4.73706 4.76441 4.84807 4.86644 4.92405 4.99625 5.01372 5.08542 5.17134 5.18808 5.20108 5.30174 5.33477 5.33980 5.37536 5.42115 5.45606 5.48036 5.66274 5.73885 5.80937 6.34213 6.44827 6.57345 7.17614 7.28743 7.91917 8.37166 9.24023 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.002292 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.463142 B =12211.067136 C =12514.052643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.194 3.806 2 N -0.612 5.612 3 C -0.259 4.259 4 H 0.076 0.924 5 C -0.058 4.058 6 N -0.936 5.936 7 Si 0.966 3.034 8 H -0.289 1.289 9 H -0.300 1.300 10 H -0.264 1.264 11 C 0.145 3.855 12 C 0.051 3.949 13 O -0.393 6.393 14 C 0.055 3.945 15 C 0.132 3.868 16 N -0.713 5.713 17 C 0.542 3.458 18 O -0.575 6.575 19 C -0.164 4.164 20 C -0.023 4.023 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.141 4.141 27 C -0.152 4.152 28 H 0.000 1.000 29 H 0.004 0.996 30 H 0.023 0.977 31 H 0.243 0.757 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.020 0.980 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.088 0.912 40 H 0.410 0.590 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.040 0.960 48 H 0.077 0.923 49 H 0.063 0.937 50 H 0.069 0.931 51 H 0.039 0.961 52 H 0.104 0.896 53 H 0.131 0.869 54 H 0.123 0.877 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.904 -25.579 4.852 26.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.335 5.335 3 C -0.390 4.390 4 H 0.093 0.907 5 C -0.253 4.253 6 N -0.583 5.583 7 Si 0.794 3.206 8 H -0.217 1.217 9 H -0.227 1.227 10 H -0.188 1.188 11 C 0.019 3.981 12 C -0.028 4.028 13 O -0.312 6.312 14 C -0.022 4.022 15 C 0.008 3.992 16 N -0.366 5.366 17 C 0.330 3.670 18 O -0.455 6.455 19 C -0.168 4.168 20 C -0.042 4.042 21 C -0.161 4.161 22 C -0.151 4.151 23 C -0.158 4.158 24 C -0.150 4.150 25 C -0.152 4.152 26 C -0.178 4.178 27 C -0.189 4.189 28 H 0.018 0.982 29 H 0.023 0.977 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.248 0.752 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.058 0.942 52 H 0.122 0.878 53 H 0.149 0.851 54 H 0.141 0.859 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.563 -25.026 5.438 26.207 hybrid contribution 0.618 1.784 0.111 1.891 sum -4.946 -23.242 5.549 24.402 Atomic orbital electron populations 1.20313 0.83051 0.94664 0.97111 1.44125 1.01993 1.01700 1.85695 1.19584 0.98033 0.86415 1.34947 0.90671 1.25793 0.98839 1.01813 0.98868 1.70301 1.21429 1.26922 1.39613 0.85266 0.78585 0.80128 0.76582 1.21657 1.22680 1.18811 1.21156 0.96850 0.87056 0.93058 1.23267 0.85315 0.97966 0.96221 1.87967 1.30970 1.87728 1.24557 1.22683 0.95763 0.99616 0.84166 1.21209 0.93010 0.88697 0.96321 1.45904 1.17748 1.33734 1.39251 1.20068 0.80591 0.83820 0.82509 1.90625 1.62666 1.58908 1.33255 1.21624 1.03928 0.98519 0.92680 1.20479 0.92103 0.96384 0.95224 1.21664 0.95546 0.98938 0.99939 1.21501 0.97348 0.99936 0.96325 1.21542 0.97863 0.99153 0.97290 1.21496 0.95258 0.98155 1.00064 1.21568 0.98511 0.99356 0.95786 1.23264 0.96055 0.99840 0.98627 1.23127 1.02375 1.02095 0.91303 0.98186 0.97740 0.95886 0.94746 0.90838 0.91941 0.96154 0.91102 0.92845 0.90125 0.94280 0.89404 0.75217 0.88488 0.92823 0.92764 0.90647 0.92519 0.90960 0.94092 0.90439 0.91824 0.91227 0.94226 0.87815 0.85093 0.85905 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.17 8.63 127.77 1.10 11.27 16 2 N -0.61 -31.00 2.89 -726.94 -2.10 -33.10 16 3 C -0.26 -14.30 9.66 84.04 0.81 -13.48 16 4 H 0.08 3.94 7.86 -2.91 -0.02 3.92 16 5 C -0.06 -3.34 5.06 84.86 0.43 -2.91 16 6 N -0.94 -57.69 10.75 21.65 0.23 -57.45 16 7 Si 0.97 45.98 29.58 68.60 2.03 48.01 16 8 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 9 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 11 C 0.14 5.57 6.11 86.38 0.53 6.10 16 12 C 0.05 1.77 6.28 71.98 0.45 2.22 16 13 O -0.39 -14.22 9.85 -148.98 -1.47 -15.69 16 14 C 0.05 1.55 6.07 71.98 0.44 1.99 16 15 C 0.13 3.92 6.06 86.38 0.52 4.44 16 16 N -0.71 -18.71 5.46 -463.06 -2.53 -21.23 16 17 C 0.54 15.39 6.75 87.66 0.59 15.98 16 18 O -0.57 -20.90 13.33 -3.04 -0.04 -20.94 16 19 C -0.16 -3.31 1.60 -52.93 -0.08 -3.40 16 20 C -0.02 -0.43 1.95 -10.80 -0.02 -0.45 16 21 C -0.12 -2.74 5.03 30.59 0.15 -2.58 16 22 C -0.11 -2.00 5.92 30.60 0.18 -1.82 16 23 C -0.12 -2.09 5.92 30.60 0.18 -1.91 16 24 C -0.11 -1.72 5.93 30.61 0.18 -1.54 16 25 C -0.11 -2.16 4.93 30.61 0.15 -2.01 16 26 C -0.14 -1.89 9.65 30.59 0.30 -1.59 16 27 C -0.15 -2.63 9.95 30.59 0.30 -2.32 16 28 H 0.00 -0.01 7.33 -2.39 -0.02 -0.03 16 29 H 0.00 0.22 7.35 -2.39 -0.02 0.20 16 30 H 0.02 1.04 7.83 -2.39 -0.02 1.02 16 31 H 0.24 14.71 8.31 -92.71 -0.77 13.93 16 32 H 0.07 2.59 8.03 -2.39 -0.02 2.57 16 33 H 0.06 2.16 7.86 -2.39 -0.02 2.14 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 40 H 0.41 8.87 6.36 -92.71 -0.59 8.28 16 41 H 0.10 1.32 8.09 -2.39 -0.02 1.30 16 42 H 0.05 1.61 5.88 -2.39 -0.01 1.60 16 43 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.04 1.02 6.62 -2.39 -0.02 1.00 16 52 H 0.10 1.29 6.40 -2.39 -0.02 1.27 16 53 H 0.13 1.11 8.14 -2.38 -0.02 1.09 16 54 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 55 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -73.43 425.01 2.60 -70.83 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.25 Total: 21.58 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 6.22 Total: 7.99 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -4.39 Total: -111.79 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -1.51 Total: -36.62 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -73.43 2.60 -70.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725440339.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.745 kcal (2) G-P(sol) polarization free energy of solvation -73.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds