Wall clock time and date at job start Tue Mar 31 2020 22:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36935 * 119.99813 * 2 1 4 4 H 1.08007 * 119.99944 * 211.89417 * 3 2 1 5 5 C 1.38814 * 120.00388 * 31.89189 * 3 2 1 6 6 N 1.31624 * 119.99667 * 6.49536 * 5 3 2 7 7 Si 1.86799 * 120.00183 * 186.49349 * 5 3 2 8 8 H 1.48491 * 109.47102 * 90.00154 * 7 5 3 9 9 H 1.48509 * 109.46777 * 209.99994 * 7 5 3 10 10 H 1.48493 * 109.47230 * 329.99793 * 7 5 3 11 11 C 1.46500 * 120.00418 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46882 * 89.99665 * 11 2 1 13 13 H 1.09005 * 109.46870 * 60.01096 * 12 11 2 14 14 O 1.42896 * 109.47669 * 300.00526 * 12 11 2 15 15 C 1.53005 * 109.46743 * 180.02562 * 12 11 2 16 16 N 1.46503 * 109.46864 * 185.00385 * 15 12 11 17 17 C 1.46499 * 119.99941 * 270.00181 * 16 15 12 18 18 C 1.34779 * 120.00026 * 90.00220 * 16 15 12 19 19 O 1.21276 * 119.99838 * 354.80758 * 18 16 15 20 20 C 1.50700 * 119.99719 * 174.80204 * 18 16 15 21 21 C 1.53001 * 109.46733 * 97.64829 * 20 18 16 22 22 C 1.53785 * 113.61236 * 277.45029 * 21 20 18 23 23 C 1.53953 * 87.01899 * 220.05009 * 22 21 20 24 24 C 1.53777 * 87.11303 * 25.36232 * 23 22 21 25 25 C 1.53003 * 109.46895 * 217.64380 * 20 18 16 26 26 C 1.53780 * 113.61377 * 159.14337 * 25 20 18 27 27 C 1.53952 * 87.01755 * 220.04895 * 26 25 20 28 28 C 1.53771 * 113.61534 * 61.53214 * 25 20 18 29 29 H 1.08997 * 109.47279 * 265.32010 * 1 2 3 30 30 H 1.09004 * 109.47328 * 25.32091 * 1 2 3 31 31 H 1.09006 * 109.47246 * 145.31991 * 1 2 3 32 32 H 0.97001 * 119.99735 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.46658 * 330.00006 * 11 2 1 34 34 H 1.08998 * 109.47310 * 210.00566 * 11 2 1 35 35 H 0.96705 * 113.99354 * 299.99693 * 14 12 11 36 36 H 1.08997 * 109.47276 * 305.00136 * 15 12 11 37 37 H 1.08997 * 109.47071 * 65.00791 * 15 12 11 38 38 H 1.09004 * 109.47351 * 95.22964 * 17 16 15 39 39 H 1.09003 * 109.47143 * 215.23211 * 17 16 15 40 40 H 1.08998 * 109.47271 * 335.22512 * 17 16 15 41 41 H 1.08989 * 109.47459 * 337.64562 * 20 18 16 42 42 H 1.08998 * 112.85288 * 48.64606 * 21 20 18 43 43 H 1.08994 * 113.61354 * 334.56900 * 22 21 20 44 44 H 1.09002 * 113.61423 * 105.47184 * 22 21 20 45 45 H 1.09004 * 113.54129 * 270.80937 * 23 22 21 46 46 H 1.09000 * 113.74562 * 139.94425 * 23 22 21 47 47 H 1.08997 * 113.61909 * 220.08725 * 24 23 22 48 48 H 1.09002 * 113.61216 * 89.18780 * 24 23 22 49 49 H 1.09001 * 112.84835 * 290.33487 * 25 20 18 50 50 H 1.09002 * 113.61056 * 334.56465 * 26 25 20 51 51 H 1.08995 * 113.61994 * 105.46475 * 26 25 20 52 52 H 1.09008 * 113.53376 * 270.81020 * 27 26 25 53 53 H 1.08997 * 113.74521 * 139.94554 * 27 26 25 54 54 H 1.08998 * 113.61852 * 254.52713 * 28 25 20 55 55 H 1.09006 * 113.61571 * 25.42937 * 28 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1074 1.2565 -0.4942 5 6 1.6127 2.2974 0.6351 6 7 0.5104 2.1812 1.3449 7 14 2.4547 3.9578 0.4825 8 1 1.9145 4.6801 -0.6971 9 1 2.2023 4.7554 1.7095 10 1 3.9164 3.7580 0.3140 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 3.0416 -0.9515 -1.9559 14 8 1.2039 -1.8821 -2.1153 15 6 3.2170 -3.0363 -1.4411 16 7 3.5655 -3.3996 -2.8169 17 6 2.6449 -4.2128 -3.6153 18 6 4.7330 -2.9857 -3.3481 19 8 5.4517 -2.2355 -2.7225 20 6 5.1453 -3.4553 -4.7195 21 6 4.7825 -2.3883 -5.7543 22 6 3.3153 -2.4473 -6.2115 23 6 3.8298 -2.1493 -7.6315 24 6 5.1668 -2.7700 -7.1935 25 6 6.6561 -3.6958 -4.7432 26 6 7.1133 -4.6305 -5.8756 27 6 8.0900 -5.2511 -4.8602 28 6 7.1223 -4.7829 -3.7606 29 1 -0.3634 -0.0838 1.0242 30 1 -0.3634 0.9289 -0.4395 31 1 -0.3634 -0.8451 -0.5848 32 1 0.1354 2.9578 1.7890 33 1 1.6084 -2.0281 0.5148 34 1 3.1499 -1.1381 0.5144 35 1 0.6268 -2.5447 -1.7115 36 1 4.1277 -2.9301 -0.8516 37 1 2.5917 -3.8162 -1.0067 38 1 2.0200 -3.5608 -4.2256 39 1 3.2161 -4.8786 -4.2624 40 1 2.0139 -4.8043 -2.9520 41 1 4.6258 -4.3834 -4.9571 42 1 5.1099 -1.3896 -5.4652 43 1 2.8653 -3.4346 -6.1084 44 1 2.6959 -1.6531 -5.7948 45 1 3.8955 -1.0847 -7.8563 46 1 3.3200 -2.7156 -8.4109 47 1 6.0399 -2.2361 -7.5686 48 1 5.2238 -3.8458 -7.3595 49 1 7.2327 -2.7730 -4.6792 50 1 6.3385 -5.3190 -6.2130 51 1 7.6072 -4.1119 -6.6973 52 1 9.0597 -4.7540 -4.8291 53 1 8.1725 -6.3352 -4.9367 54 1 7.6236 -4.3872 -2.8773 55 1 6.3500 -5.5132 -3.5187 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725719562.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:04 Heat of formation + Delta-G solvation = -47.900825 kcal Electronic energy + Delta-G solvation = -31714.051768 eV Core-core repulsion = 27752.156947 eV Total energy + Delta-G solvation = -3961.894821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80279 -39.86132 -38.76516 -38.63684 -36.81010 -35.92994 -33.36648 -32.36136 -30.92186 -28.17414 -27.79035 -27.13210 -26.70550 -26.25517 -25.41154 -24.22827 -22.96807 -22.31584 -20.93648 -19.95089 -19.79582 -18.83912 -18.09182 -17.60732 -17.07905 -16.82380 -16.67658 -16.48845 -16.21020 -16.08364 -15.52823 -15.38237 -15.15227 -14.76069 -14.53593 -14.37917 -13.94304 -13.71094 -13.54038 -13.39804 -13.36936 -13.10639 -13.07972 -12.99166 -12.87017 -12.69259 -12.58025 -12.52067 -12.29677 -12.28231 -12.11686 -12.01995 -11.89648 -11.83189 -11.43490 -11.35935 -11.28903 -11.20877 -11.14220 -10.67423 -10.64518 -10.44499 -9.55087 -8.58277 -7.89320 -5.44992 1.38579 1.39457 1.49408 1.67494 2.08809 2.44650 3.23377 3.37673 3.53660 3.56540 3.68612 3.72661 3.81225 3.87184 3.94438 4.01373 4.03476 4.10159 4.17147 4.18093 4.27472 4.40746 4.48926 4.52228 4.56257 4.57151 4.71723 4.79914 4.83553 4.84929 4.87520 4.90680 4.93237 4.95368 4.98305 5.02231 5.07475 5.11393 5.12568 5.16261 5.20183 5.22693 5.34771 5.36121 5.42891 5.56490 5.59705 5.62280 5.64527 5.65364 6.33672 6.47458 7.01180 7.13294 7.27162 7.83884 8.29196 9.12556 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.002902 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.851362 B = 9645.072143 C = 9727.091522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.609 5.609 3 C -0.270 4.270 4 H 0.047 0.953 5 C -0.042 4.042 6 N -0.932 5.932 7 Si 0.964 3.036 8 H -0.284 1.284 9 H -0.284 1.284 10 H -0.275 1.275 11 C 0.123 3.877 12 C 0.097 3.903 13 H 0.042 0.958 14 O -0.557 6.557 15 C 0.094 3.906 16 N -0.606 5.606 17 C 0.072 3.928 18 C 0.510 3.490 19 O -0.593 6.593 20 C -0.074 4.074 21 C -0.105 4.105 22 C -0.139 4.139 23 C -0.141 4.141 24 C -0.113 4.113 25 C -0.096 4.096 26 C -0.116 4.116 27 C -0.136 4.136 28 C -0.143 4.143 29 H -0.005 1.005 30 H 0.013 0.987 31 H 0.038 0.962 32 H 0.251 0.749 33 H 0.068 0.932 34 H 0.038 0.962 35 H 0.378 0.622 36 H 0.067 0.933 37 H 0.116 0.884 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.053 0.947 43 H 0.106 0.894 44 H 0.039 0.961 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.109 0.891 49 H 0.066 0.934 50 H 0.103 0.897 51 H 0.077 0.923 52 H 0.074 0.926 53 H 0.083 0.917 54 H 0.040 0.960 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.665 -22.981 -18.754 30.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.332 5.332 3 C -0.401 4.401 4 H 0.065 0.935 5 C -0.238 4.238 6 N -0.577 5.577 7 Si 0.792 3.208 8 H -0.211 1.211 9 H -0.210 1.210 10 H -0.200 1.200 11 C -0.004 4.004 12 C 0.034 3.966 13 H 0.060 0.940 14 O -0.363 6.363 15 C -0.030 4.030 16 N -0.336 5.336 17 C -0.070 4.070 18 C 0.299 3.701 19 O -0.473 6.473 20 C -0.095 4.095 21 C -0.124 4.124 22 C -0.176 4.176 23 C -0.178 4.178 24 C -0.150 4.150 25 C -0.115 4.115 26 C -0.153 4.153 27 C -0.174 4.174 28 C -0.181 4.181 29 H 0.013 0.987 30 H 0.031 0.969 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.226 0.774 36 H 0.086 0.914 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.072 0.928 43 H 0.125 0.875 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.128 0.872 49 H 0.084 0.916 50 H 0.121 0.879 51 H 0.095 0.905 52 H 0.093 0.907 53 H 0.101 0.899 54 H 0.059 0.941 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.163 -22.027 -18.704 30.028 hybrid contribution 0.127 1.604 1.146 1.975 sum 8.290 -20.423 -17.559 28.180 Atomic orbital electron populations 1.20472 0.82559 0.97022 0.96021 1.43814 1.02089 1.01068 1.86235 1.19295 1.03443 0.89618 1.27718 0.93527 1.25910 0.98713 1.02257 0.96957 1.70156 1.22670 1.29637 1.35256 0.85327 0.78418 0.80022 0.77048 1.21062 1.20975 1.20032 1.21495 0.96123 0.88243 0.94545 1.22606 0.84538 0.95283 0.94176 0.94020 1.86596 1.29149 1.64348 1.56246 1.22120 1.00373 0.97015 0.83518 1.47876 1.19075 1.52643 1.14055 1.22206 0.93346 0.94752 0.96646 1.21366 0.80334 0.79459 0.88900 1.90680 1.54966 1.37499 1.64203 1.21446 0.97689 1.00525 0.89864 1.22408 0.97995 0.96969 0.95043 1.23143 0.94922 1.02506 0.97015 1.22827 0.97498 1.00906 0.96562 1.22933 0.97276 1.02463 0.92372 1.22329 0.92728 0.97619 0.98788 1.23011 0.99026 0.97500 0.95757 1.22814 0.97402 1.01428 0.95733 1.22959 0.99900 0.98222 0.96973 0.98706 0.96850 0.94352 0.93966 0.91386 0.94315 0.77449 0.91446 0.86603 0.92271 0.89019 0.88847 0.86165 0.92815 0.87523 0.94207 0.91514 0.89415 0.91451 0.87246 0.91586 0.87861 0.90478 0.90724 0.89867 0.94112 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.42 8.78 127.77 1.12 10.54 16 2 N -0.61 -32.53 2.82 -726.94 -2.05 -34.58 16 3 C -0.27 -16.26 9.57 84.03 0.80 -15.46 16 4 H 0.05 2.89 7.84 -2.91 -0.02 2.86 16 5 C -0.04 -2.54 5.15 84.86 0.44 -2.10 16 6 N -0.93 -57.56 11.00 21.65 0.24 -57.33 16 7 Si 0.96 48.33 29.56 68.60 2.03 50.36 16 8 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 9 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 11 C 0.12 5.18 5.38 86.38 0.47 5.65 16 12 C 0.10 3.55 3.48 30.60 0.11 3.66 16 13 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 14 O -0.56 -18.56 11.54 -148.98 -1.72 -20.28 16 15 C 0.09 2.59 5.07 86.38 0.44 3.03 16 16 N -0.61 -14.86 2.84 -846.75 -2.40 -17.26 16 17 C 0.07 1.06 8.77 127.77 1.12 2.18 16 18 C 0.51 14.84 6.14 87.66 0.54 15.37 16 19 O -0.59 -23.90 16.15 -3.02 -0.05 -23.95 16 20 C -0.07 -1.47 1.29 -11.54 -0.01 -1.49 16 21 C -0.11 -2.17 3.11 -10.27 -0.03 -2.20 16 22 C -0.14 -2.54 6.52 31.18 0.20 -2.33 16 23 C -0.14 -2.10 8.09 31.18 0.25 -1.85 16 24 C -0.11 -1.54 6.25 31.12 0.19 -1.34 16 25 C -0.10 -1.86 2.53 -10.27 -0.03 -1.89 16 26 C -0.12 -1.35 5.64 31.18 0.18 -1.17 16 27 C -0.14 -1.82 8.09 31.18 0.25 -1.57 16 28 C -0.14 -2.68 7.15 31.12 0.22 -2.45 16 29 H -0.01 -0.29 7.74 -2.39 -0.02 -0.31 16 30 H 0.01 0.73 7.13 -2.39 -0.02 0.71 16 31 H 0.04 1.62 6.81 -2.38 -0.02 1.61 16 32 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 34 H 0.04 1.74 8.04 -2.39 -0.02 1.72 16 35 H 0.38 9.02 8.81 -74.05 -0.65 8.37 16 36 H 0.07 2.16 7.50 -2.39 -0.02 2.14 16 37 H 0.12 2.23 7.86 -2.39 -0.02 2.21 16 38 H 0.06 0.99 6.73 -2.39 -0.02 0.97 16 39 H 0.09 0.85 5.83 -2.39 -0.01 0.83 16 40 H 0.09 0.96 7.83 -2.39 -0.02 0.94 16 41 H 0.12 1.58 5.35 -2.39 -0.01 1.56 16 42 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.11 1.40 6.54 -2.39 -0.02 1.38 16 44 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 48 H 0.11 0.95 6.74 -2.39 -0.02 0.93 16 49 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.10 0.77 7.56 -2.39 -0.02 0.75 16 51 H 0.08 0.81 8.08 -2.39 -0.02 0.80 16 52 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 53 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 54 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 55 H 0.09 1.41 8.10 -2.38 -0.02 1.39 16 Total: -1.00 -80.85 418.53 2.51 -78.34 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.20 Total: 18.11 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 6.26 Total: 6.58 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -4.21 Total: -109.17 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -1.77 Total: -44.23 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -80.85 2.51 -78.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725719562.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.442 kcal (2) G-P(sol) polarization free energy of solvation -80.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds