Wall clock time and date at job start Tue Mar 31 2020 22:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50693 * 119.99888 * 2 1 4 4 C 1.50699 * 119.99948 * 180.02562 * 2 1 3 5 5 H 1.09007 * 109.46798 * 354.99875 * 4 2 1 6 6 C 1.52998 * 109.47219 * 114.99590 * 4 2 1 7 7 C 1.50696 * 109.47288 * 185.00016 * 6 4 2 8 8 O 1.21281 * 120.00193 * 0.02562 * 7 6 4 9 9 N 1.34779 * 120.00279 * 180.02562 * 7 6 4 10 10 C 1.46501 * 120.00272 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47281 * 34.99929 * 10 9 7 12 12 C 1.52999 * 109.46733 * 275.00072 * 10 9 7 13 13 C 1.52999 * 109.47253 * 154.99920 * 10 9 7 14 14 C 1.53046 * 109.45928 * 300.02857 * 13 10 9 15 15 C 1.53191 * 109.31082 * 178.60273 * 14 13 10 16 16 N 1.46924 * 108.76611 * 54.65052 * 15 14 13 17 17 C 1.36944 * 120.62757 * 126.40551 * 16 15 14 18 18 H 1.07999 * 120.00039 * 331.82688 * 17 16 15 19 19 C 1.38813 * 119.99819 * 151.82454 * 17 16 15 20 20 N 1.31622 * 120.00052 * 343.07431 * 19 17 16 21 21 Si 1.86796 * 119.99760 * 163.08141 * 19 17 16 22 22 H 1.48493 * 109.47528 * 59.99890 * 21 19 17 23 23 H 1.48502 * 109.46948 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46991 * 299.99524 * 21 19 17 25 25 C 1.46920 * 118.74211 * 306.38627 * 16 15 14 26 26 C 1.53037 * 109.46189 * 179.97438 * 13 10 9 27 27 O 1.42895 * 109.47204 * 234.99959 * 4 2 1 28 28 C 1.42904 * 113.99911 * 89.99874 * 27 4 2 29 29 C 1.52998 * 109.46600 * 180.02562 * 28 27 4 30 30 H 1.08005 * 120.00511 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99992 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.47427 * 269.99986 * 3 2 1 33 33 H 1.09002 * 109.47802 * 30.00193 * 3 2 1 34 34 H 1.09002 * 109.46922 * 150.00265 * 3 2 1 35 35 H 1.08997 * 109.47470 * 305.00176 * 6 4 2 36 36 H 1.09007 * 109.46898 * 64.99811 * 6 4 2 37 37 H 0.97006 * 119.99812 * 359.97438 * 9 7 6 38 38 H 1.09003 * 109.46871 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.47149 * 299.99173 * 12 10 9 40 40 H 1.08995 * 109.47687 * 60.00274 * 12 10 9 41 41 H 1.08997 * 109.45833 * 59.99526 * 13 10 9 42 42 H 1.08996 * 109.49263 * 298.56142 * 14 13 10 43 43 H 1.08998 * 109.49869 * 58.66325 * 14 13 10 44 44 H 1.09000 * 109.59467 * 294.86337 * 15 14 13 45 45 H 1.09000 * 109.70266 * 174.50486 * 15 14 13 46 46 H 0.97001 * 119.99842 * 179.97438 * 20 19 17 47 47 H 1.09004 * 109.58639 * 293.81642 * 25 16 15 48 48 H 1.09002 * 109.70630 * 173.46756 * 25 16 15 49 49 H 1.09004 * 109.49815 * 301.33953 * 26 13 10 50 50 H 1.09003 * 109.49688 * 61.39835 * 26 13 10 51 51 H 1.08990 * 109.46810 * 299.99848 * 28 27 4 52 52 H 1.09000 * 109.47105 * 60.00540 * 28 27 4 53 53 H 1.09009 * 109.46904 * 179.97438 * 29 28 27 54 54 H 1.08999 * 109.47431 * 299.99327 * 29 28 27 55 55 H 1.08997 * 109.47467 * 60.00010 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3584 -2.1317 0.0886 6 6 2.8463 -1.4415 -1.3080 7 6 3.5007 -2.7978 -1.3626 8 8 3.3549 -3.5788 -0.4462 9 7 4.2481 -3.1431 -2.4297 10 6 4.8838 -4.4619 -2.4831 11 1 4.2346 -5.1977 -2.0084 12 6 6.2233 -4.4125 -1.7455 13 6 5.1194 -4.8559 -3.9426 14 6 3.7793 -4.9045 -4.6802 15 6 4.0225 -5.2651 -6.1491 16 7 4.7892 -6.5171 -6.2078 17 6 4.3375 -7.5778 -6.9469 18 1 3.2783 -7.7090 -7.1118 19 6 5.2411 -8.4843 -7.4841 20 7 6.5149 -8.1664 -7.5786 21 14 4.6494 -10.1553 -8.0730 22 1 3.6419 -9.9729 -9.1485 23 1 5.8009 -10.9306 -8.6004 24 1 4.0349 -10.8908 -6.9386 25 6 6.0499 -6.6092 -5.4590 26 6 5.7840 -6.2333 -3.9979 27 8 2.9709 -1.3318 1.1030 28 6 2.4138 -1.8776 2.3004 29 6 3.4679 -1.8559 3.4092 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 2.2451 1.6198 -1.0277 33 1 1.4744 2.0648 0.5138 34 1 3.0159 1.1747 0.5138 35 1 2.1656 -1.3323 -2.1522 36 1 3.6116 -0.6666 -1.3558 37 1 4.3644 -2.5186 -3.1629 38 1 6.6965 -5.3936 -1.7855 39 1 6.8726 -3.6768 -2.2202 40 1 6.0555 -4.1318 -0.7057 41 1 5.7685 -4.1200 -4.4170 42 1 3.1389 -5.6579 -4.2217 43 1 3.2955 -3.9296 -4.6204 44 1 4.5870 -4.4679 -6.6326 45 1 3.0676 -5.3971 -6.6580 46 1 7.1464 -8.8000 -7.9537 47 1 6.7798 -5.9216 -5.8863 48 1 6.4341 -7.6280 -5.5101 49 1 6.7273 -6.2043 -3.4523 50 1 5.1246 -6.9739 -3.5454 51 1 1.5538 -1.2816 2.6055 52 1 2.0981 -2.9049 2.1188 53 1 3.0428 -2.2718 4.3227 54 1 4.3282 -2.4517 3.1043 55 1 3.7833 -0.8285 3.5906 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725762961.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:15 Heat of formation + Delta-G solvation = -83.491734 kcal Electronic energy + Delta-G solvation = -30566.571100 eV Core-core repulsion = 26603.132941 eV Total energy + Delta-G solvation = -3963.438159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.14104 -39.80773 -38.95954 -36.72513 -36.07063 -34.46619 -33.11912 -32.44375 -31.45224 -31.12029 -30.07635 -28.19702 -27.15923 -25.50860 -24.24034 -23.65639 -23.62544 -21.92398 -21.38517 -20.60830 -19.76980 -18.72477 -17.89751 -17.79184 -17.21915 -16.77646 -16.59293 -16.01421 -15.80652 -15.60060 -15.31407 -15.01972 -14.89570 -14.81826 -14.70253 -14.38504 -14.25249 -14.01613 -13.91943 -13.68813 -13.40090 -13.32514 -13.10842 -12.92142 -12.77508 -12.72206 -12.59841 -12.56601 -12.47454 -12.37415 -12.17096 -12.02147 -11.97366 -11.78888 -11.77493 -11.47400 -11.22632 -11.06626 -10.74620 -10.52331 -10.44963 -10.06883 -9.96241 -8.65600 -7.86937 -5.31722 1.21173 1.45475 1.48079 1.54620 1.77557 2.27654 2.51178 2.81122 3.26992 3.65163 3.71093 3.76953 3.94379 3.95410 3.98583 4.08644 4.16616 4.24150 4.35641 4.41962 4.44805 4.50271 4.52531 4.57553 4.58963 4.61853 4.73699 4.76124 4.82433 4.84858 4.88667 4.91732 4.96315 5.01518 5.02375 5.05453 5.07669 5.14662 5.20267 5.20708 5.24601 5.30721 5.37948 5.45956 5.55095 5.62492 5.65678 5.66358 5.81242 5.83681 6.35044 6.40411 6.68308 7.16439 7.38928 7.88969 8.39489 9.18834 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.002169 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.096960 B =12908.193583 C =13407.263186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.155 4.155 3 C -0.113 4.113 4 C 0.140 3.860 5 H 0.055 0.945 6 C -0.130 4.130 7 C 0.512 3.488 8 O -0.578 6.578 9 N -0.713 5.713 10 C 0.158 3.842 11 H 0.059 0.941 12 C -0.155 4.155 13 C -0.072 4.072 14 C -0.112 4.112 15 C 0.141 3.859 16 N -0.612 5.612 17 C -0.263 4.263 18 H 0.062 0.938 19 C -0.050 4.050 20 N -0.933 5.933 21 Si 0.964 3.036 22 H -0.275 1.275 23 H -0.293 1.293 24 H -0.281 1.281 25 C 0.178 3.822 26 C -0.122 4.122 27 O -0.384 6.384 28 C 0.062 3.938 29 C -0.144 4.144 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.413 0.587 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.083 0.917 44 H 0.020 0.980 45 H 0.048 0.952 46 H 0.250 0.750 47 H 0.000 1.000 48 H 0.049 0.951 49 H 0.074 0.926 50 H 0.042 0.958 51 H 0.053 0.947 52 H 0.034 0.966 53 H 0.085 0.915 54 H 0.047 0.953 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.174 20.587 17.534 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.155 4.155 3 C -0.169 4.169 4 C 0.082 3.918 5 H 0.073 0.927 6 C -0.170 4.170 7 C 0.300 3.700 8 O -0.457 6.457 9 N -0.365 5.365 10 C 0.053 3.947 11 H 0.077 0.923 12 C -0.213 4.213 13 C -0.091 4.091 14 C -0.151 4.151 15 C 0.016 3.984 16 N -0.336 5.336 17 C -0.394 4.394 18 H 0.080 0.920 19 C -0.246 4.246 20 N -0.579 5.579 21 Si 0.792 3.208 22 H -0.201 1.201 23 H -0.219 1.219 24 H -0.207 1.207 25 C 0.052 3.948 26 C -0.161 4.161 27 O -0.303 6.303 28 C -0.015 4.015 29 C -0.202 4.202 30 H 0.114 0.886 31 H 0.135 0.865 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.250 0.750 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.038 0.962 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.018 0.982 48 H 0.068 0.932 49 H 0.092 0.908 50 H 0.061 0.939 51 H 0.071 0.929 52 H 0.052 0.948 53 H 0.104 0.896 54 H 0.066 0.934 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.963 20.008 18.090 28.124 hybrid contribution -0.204 -1.262 -0.900 1.564 sum -8.168 18.745 17.190 26.713 Atomic orbital electron populations 1.23943 0.94911 1.02854 0.99950 1.22241 0.95699 0.96247 1.01361 1.20762 1.00161 0.93206 1.02805 1.20773 0.90629 0.94124 0.86293 0.92709 1.21848 1.02047 0.94311 0.98790 1.21024 0.78101 0.89528 0.81321 1.90676 1.62786 1.54134 1.38115 1.46003 1.51154 1.17436 1.21954 1.20762 0.93997 0.84622 0.95290 0.92282 1.22123 0.96681 1.02853 0.99689 1.21178 0.97208 0.97249 0.93469 1.21879 0.96439 1.00966 0.95776 1.21061 0.94784 0.87507 0.95067 1.44325 1.23998 1.11135 1.54148 1.19450 0.91546 1.02819 1.25554 0.92012 1.25763 0.96120 1.03161 0.99548 1.70166 1.02968 1.35441 1.49343 0.85394 0.76969 0.80269 0.78152 1.20067 1.21891 1.20739 1.20570 0.86657 0.99205 0.88354 1.22062 1.00074 0.96139 0.97837 1.87860 1.39277 1.83284 1.19895 1.22452 0.96945 0.96711 0.85358 1.21705 0.98662 1.02754 0.97039 0.88579 0.86507 0.90197 0.91277 0.92123 0.85179 0.86269 0.75045 0.91346 0.91257 0.93595 0.90285 0.94078 0.89813 0.96211 0.93304 0.94112 0.98155 0.93208 0.90786 0.93924 0.92850 0.94767 0.89598 0.93386 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 13.91 67.78 0.94 -1.31 16 2 C -0.16 -2.24 5.05 -16.49 -0.08 -2.32 16 3 C -0.11 -1.31 9.73 71.23 0.69 -0.62 16 4 C 0.14 2.66 1.86 29.85 0.06 2.71 16 5 H 0.05 1.21 7.25 -2.38 -0.02 1.19 16 6 C -0.13 -2.11 5.25 29.85 0.16 -1.95 16 7 C 0.51 12.21 7.67 87.66 0.67 12.88 16 8 O -0.58 -18.85 15.08 10.74 0.16 -18.69 16 9 N -0.71 -15.20 4.36 -442.54 -1.93 -17.13 16 10 C 0.16 4.22 2.16 44.99 0.10 4.31 16 11 H 0.06 1.91 7.58 -2.39 -0.02 1.90 16 12 C -0.16 -3.89 9.13 71.98 0.66 -3.23 16 13 C -0.07 -2.14 1.79 -10.77 -0.02 -2.16 16 14 C -0.11 -3.53 5.22 30.67 0.16 -3.37 16 15 C 0.14 5.67 6.52 86.36 0.56 6.23 16 16 N -0.61 -30.76 2.99 -699.12 -2.09 -32.86 16 17 C -0.26 -14.68 9.58 84.03 0.81 -13.88 16 18 H 0.06 3.38 7.88 -2.91 -0.02 3.36 16 19 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 20 N -0.93 -55.47 11.19 21.65 0.24 -55.23 16 21 Si 0.96 45.44 29.59 68.60 2.03 47.47 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 C 0.18 8.51 5.30 86.36 0.46 8.96 16 26 C -0.12 -4.46 5.04 30.67 0.15 -4.31 16 27 O -0.38 -8.74 8.76 -135.21 -1.18 -9.93 16 28 C 0.06 1.26 6.46 71.98 0.46 1.72 16 29 C -0.14 -2.49 10.28 71.98 0.74 -1.75 16 30 H 0.10 1.23 7.84 -2.91 -0.02 1.20 16 31 H 0.12 1.10 8.04 -2.91 -0.02 1.07 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.68 8.06 -2.39 -0.02 0.66 16 34 H 0.06 0.84 7.72 -2.39 -0.02 0.82 16 35 H 0.13 1.44 8.14 -2.39 -0.02 1.43 16 36 H 0.12 1.54 8.04 -2.38 -0.02 1.52 16 37 H 0.41 6.38 8.39 -92.70 -0.78 5.60 16 38 H 0.07 1.72 6.40 -2.39 -0.02 1.71 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.08 2.07 7.40 -2.39 -0.02 2.05 16 44 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 46 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 47 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 48 H 0.05 2.74 6.07 -2.39 -0.01 2.72 16 49 H 0.07 2.40 6.36 -2.39 -0.02 2.39 16 50 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.03 0.80 8.08 -2.39 -0.02 0.78 16 53 H 0.09 1.12 8.14 -2.38 -0.02 1.11 16 54 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 55 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -70.83 430.37 4.22 -66.61 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.06 Total: 20.25 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 6.94 Total: -0.50 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -3.78 Total: -105.21 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -1.02 Total: -28.62 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -70.83 4.22 -66.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725762961.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.884 kcal (2) G-P(sol) polarization free energy of solvation -70.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds