Wall clock time and date at job start Tue Mar 31 2020 22:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00404 * 2 1 4 4 C 1.50701 * 119.99664 * 179.97438 * 2 1 3 5 5 H 1.08998 * 109.47191 * 5.00071 * 4 2 1 6 6 C 1.53000 * 109.47085 * 244.99544 * 4 2 1 7 7 C 1.50706 * 109.47142 * 175.00227 * 6 4 2 8 8 O 1.21285 * 119.99605 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00221 * 180.02562 * 7 6 4 10 10 C 1.46495 * 120.00257 * 180.02562 * 9 7 6 11 11 H 1.09009 * 109.47311 * 34.99220 * 10 9 7 12 12 C 1.53002 * 109.47067 * 274.99676 * 10 9 7 13 13 C 1.52998 * 109.47642 * 154.99743 * 10 9 7 14 14 C 1.53046 * 109.45803 * 300.02454 * 13 10 9 15 15 C 1.53194 * 109.31317 * 178.59944 * 14 13 10 16 16 N 1.46930 * 108.76052 * 54.65470 * 15 14 13 17 17 C 1.36940 * 120.62673 * 126.40736 * 16 15 14 18 18 H 1.08004 * 120.00265 * 331.82820 * 17 16 15 19 19 C 1.38812 * 120.00065 * 151.82246 * 17 16 15 20 20 N 1.31624 * 119.99737 * 343.07446 * 19 17 16 21 21 Si 1.86797 * 119.99947 * 163.06760 * 19 17 16 22 22 H 1.48498 * 109.47398 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47138 * 120.00352 * 21 19 17 24 24 H 1.48499 * 109.47212 * 240.00076 * 21 19 17 25 25 C 1.46919 * 118.74110 * 306.38356 * 16 15 14 26 26 C 1.53043 * 109.46252 * 179.97438 * 13 10 9 27 27 O 1.42908 * 109.46919 * 124.99864 * 4 2 1 28 28 C 1.42893 * 113.99900 * 270.00099 * 27 4 2 29 29 C 1.53006 * 109.47162 * 179.97438 * 28 27 4 30 30 H 1.08001 * 120.00495 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99736 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.46739 * 270.00410 * 3 2 1 33 33 H 1.09000 * 109.46944 * 30.00036 * 3 2 1 34 34 H 1.08999 * 109.47645 * 150.00212 * 3 2 1 35 35 H 1.09002 * 109.47521 * 295.00048 * 6 4 2 36 36 H 1.09002 * 109.46851 * 55.00798 * 6 4 2 37 37 H 0.96998 * 120.00077 * 359.97438 * 9 7 6 38 38 H 1.09005 * 109.46836 * 59.99741 * 12 10 9 39 39 H 1.09002 * 109.47600 * 179.97438 * 12 10 9 40 40 H 1.09003 * 109.46838 * 300.00334 * 12 10 9 41 41 H 1.08998 * 109.46235 * 59.99813 * 13 10 9 42 42 H 1.09006 * 109.49660 * 298.56792 * 14 13 10 43 43 H 1.08997 * 109.49690 * 58.65888 * 14 13 10 44 44 H 1.08998 * 109.59556 * 294.87136 * 15 14 13 45 45 H 1.08995 * 109.70287 * 174.50608 * 15 14 13 46 46 H 0.96994 * 119.99590 * 180.02562 * 20 19 17 47 47 H 1.09004 * 109.58795 * 293.81809 * 25 16 15 48 48 H 1.08999 * 109.70176 * 173.47063 * 25 16 15 49 49 H 1.08999 * 109.49355 * 301.33512 * 26 13 10 50 50 H 1.09003 * 109.49865 * 61.39766 * 26 13 10 51 51 H 1.08996 * 109.47472 * 60.00339 * 28 27 4 52 52 H 1.08999 * 109.47520 * 299.99521 * 28 27 4 53 53 H 1.08997 * 109.47007 * 300.00284 * 29 28 27 54 54 H 1.08997 * 109.47248 * 180.02562 * 29 28 27 55 55 H 1.09003 * 109.46970 * 60.00012 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 1.3584 -2.1317 -0.0886 6 6 2.8464 -1.4414 1.3079 7 6 3.5008 -2.7979 1.3625 8 8 3.3548 -3.5789 0.4461 9 7 4.2474 -3.1435 2.4300 10 6 4.8840 -4.4618 2.4828 11 1 5.1934 -4.7564 1.4799 12 6 3.8893 -5.4869 3.0312 13 6 6.1092 -4.4004 3.3971 14 6 7.1038 -3.3746 2.8487 15 6 8.3131 -3.2904 3.7853 16 7 8.8711 -4.6386 3.9589 17 6 10.1972 -4.8810 3.7185 18 1 10.7357 -4.2768 3.0033 19 6 10.8495 -5.9032 4.3941 20 7 10.3177 -6.4163 5.4833 21 14 12.4819 -6.5507 3.7573 22 1 12.8615 -5.8116 2.5266 23 1 13.5287 -6.3578 4.7928 24 1 12.3535 -7.9972 3.4468 25 6 7.9793 -5.7213 4.3958 26 6 6.7736 -5.7780 3.4526 27 8 2.9708 -1.3318 -1.1031 28 6 2.4137 -1.8776 -2.3005 29 6 3.4677 -1.8559 -3.4094 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 2.2452 1.6197 -1.0277 33 1 1.4745 2.0647 0.5138 34 1 3.0160 1.1747 0.5138 35 1 3.6117 -0.6667 1.3556 36 1 2.1657 -1.3323 2.1522 37 1 4.3639 -2.5190 3.1630 38 1 3.0164 -5.5306 2.3798 39 1 4.3627 -6.4679 3.0701 40 1 3.5798 -5.1923 4.0340 41 1 5.7996 -4.1060 4.3999 42 1 7.4328 -3.6817 1.8559 43 1 6.6228 -2.3984 2.7872 44 1 7.9998 -2.8973 4.7524 45 1 9.0687 -2.6353 3.3519 46 1 10.7737 -7.1304 5.9556 47 1 7.6389 -5.5264 5.4128 48 1 8.5125 -6.6715 4.3649 49 1 6.0576 -6.5126 3.8211 50 1 7.1053 -6.0624 2.4539 51 1 1.5537 -1.2816 -2.6056 52 1 2.0979 -2.9049 -2.1190 53 1 3.7831 -0.8285 -3.5908 54 1 3.0426 -2.2718 -4.3228 55 1 4.3281 -2.4517 -3.1045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725762962.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:19 Heat of formation + Delta-G solvation = -83.265907 kcal Electronic energy + Delta-G solvation = -30648.881586 eV Core-core repulsion = 26685.453220 eV Total energy + Delta-G solvation = -3963.428366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.14190 -39.80731 -38.95803 -36.72711 -36.08556 -34.46947 -33.11795 -32.44441 -31.45600 -31.12024 -30.07722 -28.21252 -27.16365 -25.50461 -24.24281 -23.66142 -23.62924 -21.92808 -21.38501 -20.61285 -19.76320 -18.73170 -17.89606 -17.83367 -17.16248 -16.77617 -16.57289 -16.15768 -15.75639 -15.49384 -15.31445 -15.17090 -14.87445 -14.76959 -14.68412 -14.43751 -14.22925 -14.02210 -13.95014 -13.57020 -13.41878 -13.35879 -13.18872 -12.94072 -12.78119 -12.71264 -12.63630 -12.58169 -12.43279 -12.37156 -12.14578 -11.99243 -11.97176 -11.79524 -11.76453 -11.47581 -11.22876 -11.06754 -10.74488 -10.53730 -10.43997 -10.07222 -9.96262 -8.65979 -7.87483 -5.32112 1.21071 1.44203 1.46528 1.56727 1.77286 2.27718 2.50676 2.82418 3.26556 3.64913 3.70723 3.76789 3.93439 3.95570 3.98656 4.08362 4.16282 4.23496 4.35776 4.41860 4.47000 4.49017 4.50003 4.56180 4.60315 4.61289 4.75136 4.75797 4.80660 4.83601 4.87796 4.91502 4.95096 5.01638 5.02353 5.04984 5.07493 5.14724 5.19779 5.20649 5.24051 5.30367 5.37598 5.45955 5.55014 5.62491 5.65760 5.66369 5.81159 5.83075 6.36778 6.40264 6.68297 7.16170 7.38905 7.88465 8.38938 9.18574 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017650 B = 0.002266 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.053038 B =12355.288396 C =12728.850148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.156 4.156 3 C -0.111 4.111 4 C 0.140 3.860 5 H 0.059 0.941 6 C -0.132 4.132 7 C 0.513 3.487 8 O -0.578 6.578 9 N -0.713 5.713 10 C 0.157 3.843 11 H 0.057 0.943 12 C -0.155 4.155 13 C -0.072 4.072 14 C -0.112 4.112 15 C 0.142 3.858 16 N -0.612 5.612 17 C -0.261 4.261 18 H 0.061 0.939 19 C -0.051 4.051 20 N -0.933 5.933 21 Si 0.963 3.037 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.178 3.822 26 C -0.122 4.122 27 O -0.387 6.387 28 C 0.063 3.937 29 C -0.146 4.146 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.413 0.587 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.021 0.979 45 H 0.047 0.953 46 H 0.250 0.750 47 H 0.001 0.999 48 H 0.050 0.950 49 H 0.075 0.925 50 H 0.041 0.959 51 H 0.055 0.945 52 H 0.036 0.964 53 H 0.064 0.936 54 H 0.087 0.913 55 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.829 13.848 -9.599 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.167 4.167 4 C 0.082 3.918 5 H 0.077 0.923 6 C -0.171 4.171 7 C 0.300 3.700 8 O -0.457 6.457 9 N -0.365 5.365 10 C 0.052 3.948 11 H 0.075 0.925 12 C -0.213 4.213 13 C -0.091 4.091 14 C -0.151 4.151 15 C 0.016 3.984 16 N -0.336 5.336 17 C -0.391 4.391 18 H 0.079 0.921 19 C -0.246 4.246 20 N -0.579 5.579 21 Si 0.792 3.208 22 H -0.194 1.194 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.052 3.948 26 C -0.161 4.161 27 O -0.306 6.306 28 C -0.013 4.013 29 C -0.203 4.203 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.134 0.866 36 H 0.152 0.848 37 H 0.249 0.751 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.100 0.900 44 H 0.039 0.961 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.019 0.981 48 H 0.068 0.932 49 H 0.094 0.906 50 H 0.060 0.940 51 H 0.073 0.927 52 H 0.054 0.946 53 H 0.083 0.917 54 H 0.105 0.895 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.658 13.257 -10.147 28.144 hybrid contribution 1.074 -0.677 0.217 1.287 sum -21.584 12.581 -9.930 26.884 Atomic orbital electron populations 1.23945 0.94754 1.02957 0.99679 1.22233 0.95771 0.96122 1.01557 1.20748 1.00255 0.93571 1.02166 1.20807 0.90604 0.94202 0.86212 0.92339 1.21871 1.02041 0.94250 0.98953 1.21018 0.78365 0.89448 0.81133 1.90676 1.62427 1.54374 1.38223 1.45998 1.50990 1.17553 1.22001 1.20769 0.91888 0.83241 0.98854 0.92506 1.22129 0.98681 0.99150 1.01362 1.21181 0.93240 0.95753 0.98920 1.21874 0.95970 0.99008 0.98215 1.21053 0.94574 0.86457 0.96288 1.44340 1.05370 1.04445 1.79469 1.19506 0.87292 1.15855 1.16481 0.92105 1.25756 1.01165 1.01905 0.95785 1.70176 1.41164 1.29150 1.17433 0.85267 0.79857 0.77841 0.77864 1.19414 1.21721 1.21650 1.20575 0.89118 0.92209 0.92884 1.22064 0.97631 0.96692 0.99710 1.87887 1.39420 1.83334 1.19987 1.22442 0.96820 0.96804 0.85278 1.21717 0.98724 1.02672 0.97229 0.88288 0.86507 0.91955 0.90573 0.91725 0.86633 0.84820 0.75056 0.93361 0.91364 0.91049 0.90158 0.94284 0.90030 0.96122 0.93423 0.94111 0.98071 0.93191 0.90645 0.94003 0.92679 0.94573 0.91679 0.89474 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 13.91 67.78 0.94 -1.12 16 2 C -0.16 -2.23 5.05 -16.48 -0.08 -2.32 16 3 C -0.11 -1.37 9.84 71.24 0.70 -0.67 16 4 C 0.14 2.64 1.86 29.85 0.06 2.70 16 5 H 0.06 1.23 7.25 -2.39 -0.02 1.21 16 6 C -0.13 -2.13 5.22 29.85 0.16 -1.98 16 7 C 0.51 12.22 7.67 87.66 0.67 12.89 16 8 O -0.58 -18.83 15.08 10.73 0.16 -18.67 16 9 N -0.71 -15.22 4.36 -442.53 -1.93 -17.15 16 10 C 0.16 4.19 2.16 44.99 0.10 4.29 16 11 H 0.06 1.87 7.58 -2.38 -0.02 1.86 16 12 C -0.16 -3.73 9.13 71.98 0.66 -3.07 16 13 C -0.07 -2.15 1.79 -10.76 -0.02 -2.17 16 14 C -0.11 -3.64 5.22 30.67 0.16 -3.48 16 15 C 0.14 5.78 6.52 86.36 0.56 6.34 16 16 N -0.61 -31.00 2.99 -699.11 -2.09 -33.09 16 17 C -0.26 -14.66 9.58 84.03 0.81 -13.85 16 18 H 0.06 3.38 7.89 -2.91 -0.02 3.36 16 19 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 20 N -0.93 -55.56 11.19 21.65 0.24 -55.32 16 21 Si 0.96 45.70 29.59 68.60 2.03 47.73 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 C 0.18 8.52 5.30 86.36 0.46 8.98 16 26 C -0.12 -4.47 5.04 30.67 0.15 -4.32 16 27 O -0.39 -9.23 9.07 -135.21 -1.23 -10.45 16 28 C 0.06 1.33 6.46 71.98 0.46 1.79 16 29 C -0.15 -2.76 10.28 71.98 0.74 -2.02 16 30 H 0.10 1.11 7.84 -2.91 -0.02 1.09 16 31 H 0.12 1.00 8.04 -2.91 -0.02 0.98 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.69 8.06 -2.39 -0.02 0.67 16 34 H 0.06 0.81 7.02 -2.39 -0.02 0.79 16 35 H 0.12 1.62 7.19 -2.39 -0.02 1.60 16 36 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.41 6.40 8.39 -92.71 -0.78 5.62 16 38 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.07 1.67 6.40 -2.39 -0.02 1.65 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.08 2.12 7.40 -2.39 -0.02 2.11 16 44 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 46 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 47 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 48 H 0.05 2.75 6.07 -2.39 -0.01 2.74 16 49 H 0.08 2.43 6.36 -2.39 -0.02 2.41 16 50 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.04 0.85 8.08 -2.39 -0.02 0.83 16 53 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 54 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 55 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -71.42 429.21 4.19 -67.24 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.06 Total: 20.17 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 6.94 Total: -0.45 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -3.78 Total: -105.56 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.06 Total: -29.12 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -71.42 4.19 -67.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725762962.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.031 kcal (2) G-P(sol) polarization free energy of solvation -71.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds