Wall clock time and date at job start Tue Mar 31 2020 22:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00444 * 2 1 4 4 C 1.52995 * 109.47554 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47395 * 179.36888 * 4 3 2 6 6 C 1.50693 * 110.43373 * 295.25923 * 5 4 3 7 7 O 1.21278 * 120.00019 * 115.16665 * 6 5 4 8 8 N 1.34782 * 119.99900 * 295.16751 * 6 5 4 9 9 C 1.46501 * 119.99875 * 184.53455 * 8 6 5 10 10 C 1.52998 * 109.47143 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.58662 * 294.54492 * 10 9 8 12 12 C 1.53188 * 109.58782 * 174.26335 * 10 9 8 13 13 C 1.53044 * 109.31143 * 185.43769 * 12 10 9 14 14 C 1.53035 * 109.54080 * 61.36372 * 13 12 10 15 15 C 1.53185 * 109.31343 * 298.63389 * 14 13 12 16 16 N 1.46929 * 108.89503 * 54.56421 * 15 14 13 17 17 C 1.36939 * 120.63582 * 126.46364 * 16 15 14 18 18 H 1.07991 * 120.00184 * 225.55830 * 17 16 15 19 19 C 1.38812 * 119.99428 * 45.55399 * 17 16 15 20 20 N 1.31623 * 119.99842 * 205.18756 * 19 17 16 21 21 Si 1.86804 * 120.00227 * 25.18883 * 19 17 16 22 22 H 1.48503 * 109.47083 * 95.46203 * 21 19 17 23 23 H 1.48500 * 109.46872 * 215.46188 * 21 19 17 24 24 H 1.48495 * 109.46785 * 335.46109 * 21 19 17 25 25 C 1.54888 * 110.48536 * 57.80046 * 5 4 3 26 26 C 1.55231 * 102.58618 * 156.67702 * 25 5 4 27 27 C 1.54262 * 104.23296 * 322.07947 * 26 25 5 28 28 C 1.53879 * 106.59943 * 23.61501 * 27 26 25 29 29 H 1.09000 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46680 * 300.00047 * 1 2 3 31 31 H 1.08998 * 109.46794 * 59.99579 * 1 2 3 32 32 H 1.09006 * 109.46939 * 60.00047 * 3 2 1 33 33 H 1.09006 * 109.47319 * 300.00400 * 3 2 1 34 34 H 1.09004 * 109.47453 * 59.36554 * 4 3 2 35 35 H 1.09003 * 109.47179 * 299.36717 * 4 3 2 36 36 H 0.96997 * 119.99776 * 4.53840 * 8 6 5 37 37 H 1.08998 * 109.46877 * 59.99872 * 9 8 6 38 38 H 1.09000 * 109.47063 * 299.99945 * 9 8 6 39 39 H 1.08996 * 109.50148 * 65.48343 * 12 10 9 40 40 H 1.09007 * 109.49851 * 305.38545 * 12 10 9 41 41 H 1.09000 * 109.45912 * 301.34187 * 13 12 10 42 42 H 1.09005 * 109.44743 * 181.37791 * 13 12 10 43 43 H 1.08994 * 109.49705 * 178.68131 * 14 13 12 44 44 H 1.09004 * 109.49477 * 58.58799 * 14 13 12 45 45 H 1.09003 * 109.58743 * 174.42400 * 15 14 13 46 46 H 1.08996 * 109.58895 * 294.70525 * 15 14 13 47 47 H 0.96998 * 119.99948 * 179.97438 * 20 19 17 48 48 H 1.08997 * 110.75684 * 275.06866 * 25 5 4 49 49 H 1.09005 * 110.75994 * 38.43745 * 25 5 4 50 50 H 1.09006 * 110.46796 * 203.39326 * 26 25 5 51 51 H 1.08998 * 110.58537 * 80.82984 * 26 25 5 52 52 H 1.09003 * 110.03791 * 264.32370 * 27 26 25 53 53 H 1.09008 * 110.07283 * 142.91637 * 27 26 25 54 54 H 1.08993 * 110.03062 * 240.71248 * 28 27 26 55 55 H 1.09000 * 110.03499 * 119.27957 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5822 -0.0165 6 6 3.8198 3.2941 -1.3010 7 8 3.1301 4.2914 -1.2781 8 7 4.2839 2.8224 -2.4752 9 6 4.0392 3.5682 -3.7122 10 6 4.6661 2.8206 -4.8908 11 1 5.7504 2.8083 -4.7806 12 6 4.2910 3.5205 -6.2008 13 6 4.8058 2.6940 -7.3816 14 6 4.1466 1.3130 -7.3658 15 6 4.5201 0.5881 -6.0690 16 7 4.1618 1.4407 -4.9272 17 6 3.3703 0.9598 -3.9186 18 1 2.5533 1.5571 -3.5418 19 6 3.6181 -0.2956 -3.3805 20 7 2.6440 -0.9697 -2.8068 21 14 5.3341 -1.0283 -3.4706 22 1 6.0604 -0.7446 -2.2068 23 1 5.2355 -2.4971 -3.6658 24 1 6.0703 -0.4257 -4.6107 25 6 3.6737 3.4051 1.2030 26 6 4.7986 4.4623 1.3660 27 6 6.0946 3.6897 1.0448 28 6 5.6872 2.4942 0.1657 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8561 0.6340 -0.8851 35 1 3.8583 0.6533 0.8947 36 1 4.7798 1.9892 -2.5011 37 1 4.4841 4.5600 -3.6325 38 1 2.9653 3.6635 -3.8726 39 1 4.7431 4.5119 -6.2261 40 1 3.2068 3.6128 -6.2666 41 1 5.8870 2.5813 -7.3019 42 1 4.5615 3.2024 -8.3144 43 1 4.4960 0.7334 -8.2202 44 1 3.0638 1.4261 -7.4206 45 1 3.9751 -0.3538 -6.0069 46 1 5.5921 0.3915 -6.0560 47 1 2.8170 -1.8471 -2.4312 48 1 2.7178 3.8840 0.9910 49 1 3.6032 2.7758 2.0903 50 1 4.8225 4.8389 2.3886 51 1 4.6588 5.2823 0.6616 52 1 6.5563 3.3353 1.9664 53 1 6.7886 4.3322 0.5028 54 1 5.9512 1.5597 0.6607 55 1 6.1829 2.5570 -0.8031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731541179.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:32 Heat of formation + Delta-G solvation = -90.993941 kcal Electronic energy + Delta-G solvation = -33451.107118 eV Core-core repulsion = 29487.343639 eV Total energy + Delta-G solvation = -3963.763479 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.57394 -39.71694 -38.62338 -37.88776 -35.72321 -34.71228 -33.54444 -32.47532 -32.12110 -29.68680 -28.82476 -27.67933 -26.71495 -26.09289 -23.98885 -23.62999 -23.17562 -22.12149 -21.22545 -20.98863 -19.92932 -18.34216 -17.67910 -17.41838 -17.11586 -16.92926 -16.67059 -16.53109 -16.05960 -15.63559 -15.45448 -15.29313 -15.06058 -14.91312 -14.74970 -14.67301 -14.28910 -14.24980 -13.84813 -13.69229 -13.51717 -13.16955 -13.08248 -12.73726 -12.66132 -12.49246 -12.41456 -12.29151 -12.13020 -12.07920 -12.02429 -11.87475 -11.70460 -11.60893 -11.45975 -11.33956 -11.30115 -11.21879 -11.13104 -10.49775 -10.42467 -10.36069 -9.71617 -8.37927 -7.97601 -5.41119 1.39879 1.52149 1.58087 1.83453 2.48598 2.57487 2.92610 3.17710 3.46980 3.53726 3.66681 3.84568 3.97581 4.12006 4.14820 4.19499 4.22580 4.28946 4.37625 4.38871 4.49353 4.50309 4.51999 4.54944 4.57443 4.59461 4.59848 4.72921 4.74235 4.78768 4.82665 4.85338 4.94327 4.95991 5.05221 5.06325 5.08840 5.10986 5.16460 5.20792 5.25443 5.29838 5.31013 5.35755 5.37042 5.37757 5.52973 5.65511 5.77426 6.11020 6.40908 6.47078 6.84352 7.14865 7.47528 7.77940 8.30137 9.16098 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010361 B = 0.005519 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.861937 B = 5072.133270 C = 6176.891191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.392 6.392 3 C 0.088 3.912 4 C -0.098 4.098 5 C -0.076 4.076 6 C 0.521 3.479 7 O -0.594 6.594 8 N -0.689 5.689 9 C 0.141 3.859 10 C 0.156 3.844 11 H 0.045 0.955 12 C -0.122 4.122 13 C -0.102 4.102 14 C -0.132 4.132 15 C 0.138 3.862 16 N -0.609 5.609 17 C -0.254 4.254 18 H 0.030 0.970 19 C 0.026 3.974 20 N -0.890 5.890 21 Si 0.870 3.130 22 H -0.284 1.284 23 H -0.313 1.313 24 H -0.235 1.235 25 C -0.100 4.100 26 C -0.118 4.118 27 C -0.115 4.115 28 C -0.115 4.115 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.056 0.944 33 H 0.007 0.993 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.407 0.593 37 H 0.071 0.929 38 H 0.032 0.968 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.037 0.963 46 H 0.032 0.968 47 H 0.256 0.744 48 H 0.058 0.942 49 H 0.092 0.908 50 H 0.088 0.912 51 H 0.048 0.952 52 H 0.089 0.911 53 H 0.067 0.933 54 H 0.085 0.915 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.824 7.140 3.604 10.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.310 6.310 3 C 0.012 3.988 4 C -0.136 4.136 5 C -0.079 4.079 6 C 0.308 3.692 7 O -0.477 6.477 8 N -0.339 5.339 9 C 0.017 3.983 10 C 0.051 3.949 11 H 0.063 0.937 12 C -0.161 4.161 13 C -0.140 4.140 14 C -0.171 4.171 15 C 0.013 3.987 16 N -0.335 5.335 17 C -0.384 4.384 18 H 0.048 0.952 19 C -0.175 4.175 20 N -0.529 5.529 21 Si 0.697 3.303 22 H -0.211 1.211 23 H -0.241 1.241 24 H -0.158 1.158 25 C -0.138 4.138 26 C -0.156 4.156 27 C -0.152 4.152 28 C -0.153 4.153 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.026 0.974 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.246 0.754 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.049 0.951 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.110 0.890 50 H 0.107 0.893 51 H 0.067 0.933 52 H 0.107 0.893 53 H 0.085 0.915 54 H 0.104 0.896 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.418 7.524 3.676 10.550 hybrid contribution 0.024 -1.196 -0.301 1.234 sum 6.442 6.327 3.375 9.640 Atomic orbital electron populations 1.22668 0.80865 1.02856 0.99220 1.87903 1.20241 1.27739 1.95147 1.22192 0.94219 0.84406 0.98020 1.21473 0.93449 0.95022 1.03630 1.21577 0.98160 0.94792 0.93388 1.20630 0.78750 0.83900 0.85914 1.90557 1.40335 1.28704 1.88060 1.46097 1.55791 1.26091 1.05881 1.21173 0.99089 0.94132 0.83897 1.21000 0.95828 0.85007 0.93078 0.93693 1.21878 1.00596 0.99020 0.94650 1.21349 0.99973 0.94858 0.97799 1.21955 0.99968 0.97489 0.97642 1.21397 0.96987 0.93232 0.87090 1.44386 1.58943 1.09528 1.20651 1.18111 1.07051 1.00773 1.12428 0.95219 1.25907 0.97879 0.97149 0.96606 1.70021 1.31524 1.11888 1.39443 0.86996 0.86732 0.76926 0.79643 1.21105 1.24097 1.15826 1.22512 0.98998 0.96925 0.95371 1.22361 0.93930 0.97258 1.02012 1.22116 0.97480 0.95619 1.00023 1.22301 0.91227 1.00883 1.00890 0.89124 0.92743 0.96212 0.92612 0.97450 0.91929 0.89427 0.75440 0.91059 0.94968 0.89907 0.93467 0.91639 0.90687 0.90898 0.93734 0.94436 0.95072 0.93406 0.92305 0.88954 0.89334 0.93292 0.89264 0.91451 0.89641 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 11.01 113.37 1.25 2.67 16 2 O -0.39 -16.68 10.70 -148.98 -1.59 -18.27 16 3 C 0.09 3.56 5.50 71.98 0.40 3.95 16 4 C -0.10 -3.69 4.55 30.59 0.14 -3.55 16 5 C -0.08 -2.54 0.47 -51.85 -0.02 -2.57 16 6 C 0.52 20.95 5.29 87.65 0.46 21.41 16 7 O -0.59 -26.80 15.38 -3.02 -0.05 -26.85 16 8 N -0.69 -27.92 3.43 -463.07 -1.59 -29.51 16 9 C 0.14 5.43 4.53 86.38 0.39 5.83 16 10 C 0.16 5.58 3.07 44.96 0.14 5.72 16 11 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 12 C -0.12 -3.61 5.37 30.67 0.16 -3.44 16 13 C -0.10 -2.72 5.88 30.62 0.18 -2.54 16 14 C -0.13 -4.15 6.08 30.67 0.19 -3.97 16 15 C 0.14 5.41 4.47 86.36 0.39 5.79 16 16 N -0.61 -25.92 2.37 -675.16 -1.60 -27.52 16 17 C -0.25 -12.82 6.29 84.03 0.53 -12.29 16 18 H 0.03 1.79 6.91 -2.92 -0.02 1.77 16 19 C 0.03 1.37 3.96 84.86 0.34 1.71 16 20 N -0.89 -49.92 13.97 21.65 0.30 -49.62 16 21 Si 0.87 40.07 26.74 68.60 1.83 41.91 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 24 H -0.23 -10.01 4.78 99.48 0.48 -9.53 16 25 C -0.10 -2.87 4.35 32.00 0.14 -2.73 16 26 C -0.12 -2.89 6.55 31.79 0.21 -2.68 16 27 C -0.11 -2.55 6.80 31.32 0.21 -2.33 16 28 C -0.12 -3.20 5.87 31.32 0.18 -3.02 16 29 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 1.94 7.13 -2.38 -0.02 1.93 16 33 H 0.01 0.35 7.40 -2.38 -0.02 0.33 16 34 H 0.06 2.81 6.74 -2.38 -0.02 2.80 16 35 H 0.09 2.89 8.03 -2.39 -0.02 2.87 16 36 H 0.41 17.21 5.75 -92.71 -0.53 16.68 16 37 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.03 1.43 7.74 -2.39 -0.02 1.41 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 42 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.04 1.65 7.01 -2.39 -0.02 1.63 16 46 H 0.03 1.20 6.35 -2.39 -0.02 1.19 16 47 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 48 H 0.06 1.93 7.19 -2.39 -0.02 1.91 16 49 H 0.09 2.21 8.06 -2.38 -0.02 2.20 16 50 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 51 H 0.05 1.40 7.92 -2.39 -0.02 1.38 16 52 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 53 H 0.07 1.42 8.14 -2.38 -0.02 1.41 16 54 H 0.08 2.17 7.76 -2.39 -0.02 2.15 16 55 H 0.06 1.72 7.24 -2.39 -0.02 1.70 16 Total: -1.00 -63.52 405.15 2.67 -60.85 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: 0.08 Total: 41.05 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 5.28 Total: 7.96 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -2.89 Total: -106.64 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -1.64 Total: -45.12 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 1.83 Total: 41.91 kcal Total: -63.52 2.67 -60.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731541179.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.141 kcal (2) G-P(sol) polarization free energy of solvation -63.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds