Wall clock time and date at job start Tue Mar 31 2020 22:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99387 * 2 1 4 4 C 1.53004 * 109.46701 * 184.77379 * 3 2 1 5 5 C 1.53001 * 109.47046 * 185.78471 * 4 3 2 6 6 C 1.50704 * 110.43187 * 294.91426 * 5 4 3 7 7 O 1.21273 * 119.99979 * 245.41592 * 6 5 4 8 8 N 1.34779 * 119.99756 * 65.41245 * 6 5 4 9 9 C 1.46500 * 119.99897 * 184.00849 * 8 6 5 10 10 C 1.52999 * 109.47314 * 185.27665 * 9 8 6 11 11 H 1.09007 * 109.58298 * 309.02819 * 10 9 8 12 12 C 1.53194 * 109.58775 * 69.45161 * 10 9 8 13 13 C 1.53046 * 109.31262 * 174.42817 * 12 10 9 14 14 C 1.53044 * 109.53206 * 298.63275 * 13 12 10 15 15 C 1.52760 * 109.38370 * 61.24188 * 14 13 12 16 16 N 1.46920 * 109.58789 * 188.74464 * 10 9 8 17 17 C 1.36931 * 120.63253 * 6.57294 * 16 10 9 18 18 H 1.07997 * 120.00308 * 325.71240 * 17 16 10 19 19 C 1.38818 * 119.99881 * 145.70391 * 17 16 10 20 20 N 1.31616 * 120.00104 * 342.78301 * 19 17 16 21 21 Si 1.86798 * 119.99846 * 162.77871 * 19 17 16 22 22 H 1.48501 * 109.47302 * 275.02361 * 21 19 17 23 23 H 1.48505 * 109.47133 * 35.02144 * 21 19 17 24 24 H 1.48501 * 109.47036 * 155.02234 * 21 19 17 25 25 C 1.54889 * 110.60056 * 57.53212 * 5 4 3 26 26 C 1.54892 * 102.74673 * 156.67935 * 25 5 4 27 27 C 1.54265 * 104.19582 * 322.05769 * 26 25 5 28 28 C 1.53875 * 106.59863 * 23.60995 * 27 26 25 29 29 H 1.08994 * 109.46997 * 295.21341 * 1 2 3 30 30 H 1.08998 * 109.47468 * 55.21639 * 1 2 3 31 31 H 1.09003 * 109.46466 * 175.21802 * 1 2 3 32 32 H 1.09000 * 109.47006 * 64.77548 * 3 2 1 33 33 H 1.08996 * 109.47205 * 304.76797 * 3 2 1 34 34 H 1.08993 * 109.47371 * 65.77732 * 4 3 2 35 35 H 1.09007 * 109.46654 * 305.77840 * 4 3 2 36 36 H 0.96999 * 120.00031 * 4.00291 * 8 6 5 37 37 H 1.08993 * 109.47336 * 65.27031 * 9 8 6 38 38 H 1.08998 * 109.46699 * 305.27241 * 9 8 6 39 39 H 1.09002 * 109.49741 * 294.37383 * 12 10 9 40 40 H 1.08995 * 109.50012 * 54.43935 * 12 10 9 41 41 H 1.08993 * 109.46006 * 58.65493 * 13 12 10 42 42 H 1.08999 * 109.45741 * 178.63021 * 13 12 10 43 43 H 1.09004 * 109.48973 * 181.31669 * 14 13 12 44 44 H 1.08997 * 109.49972 * 301.41247 * 14 13 12 45 45 H 1.08995 * 109.50884 * 185.70321 * 15 14 13 46 46 H 1.09003 * 109.43202 * 65.41863 * 15 14 13 47 47 H 0.97000 * 119.99757 * 354.00226 * 20 19 17 48 48 H 1.08999 * 110.75353 * 274.99094 * 25 5 4 49 49 H 1.08999 * 110.75382 * 38.36426 * 25 5 4 50 50 H 1.09001 * 110.48477 * 203.38253 * 26 25 5 51 51 H 1.08999 * 110.59838 * 80.79184 * 26 25 5 52 52 H 1.09003 * 110.03374 * 264.33002 * 27 26 25 53 53 H 1.08996 * 110.03402 * 142.89290 * 27 26 25 54 54 H 1.09002 * 110.03571 * 240.71063 * 28 27 26 55 55 H 1.09001 * 110.07554 * 119.30836 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1868 -0.1201 5 6 4.1636 2.5723 0.0246 6 6 3.7544 3.4599 -1.1225 7 8 4.5861 3.8488 -1.9149 8 7 2.4642 3.8215 -1.2678 9 6 2.0512 4.6111 -2.4307 10 6 0.5772 4.9957 -2.2886 11 1 -0.0130 4.1060 -2.0685 12 6 0.4190 6.0140 -1.1551 13 6 -1.0319 6.4986 -1.1089 14 6 -1.3836 7.1875 -2.4295 15 6 -1.2437 6.1875 -3.5759 16 7 0.1040 5.6035 -3.5397 17 6 0.9059 5.6303 -4.6493 18 1 1.9744 5.7436 -4.5408 19 6 0.3454 5.5118 -5.9138 20 7 -0.8764 5.0420 -6.0507 21 14 1.3253 6.0192 -7.4210 22 1 1.1698 7.4791 -7.6442 23 1 2.7602 5.7010 -7.2088 24 1 0.8248 5.2809 -8.6084 25 6 3.7649 3.2151 1.3763 26 6 4.9039 4.2365 1.6182 27 6 6.1710 3.5172 1.1113 28 6 5.7003 2.4591 0.0981 29 1 -0.3633 0.4378 0.9297 30 1 -0.3634 0.5862 -0.8440 31 1 -0.3632 -1.0242 -0.0857 32 1 1.7578 1.8156 0.9297 33 1 1.6225 1.8758 -0.8442 34 1 3.7870 0.7703 -1.0941 35 1 3.9072 0.5317 0.6657 36 1 1.8090 3.5589 -0.6025 37 1 2.1872 4.0213 -3.3371 38 1 2.6582 5.5144 -2.4905 39 1 0.6760 5.5442 -0.2056 40 1 1.0808 6.8616 -1.3325 41 1 -1.6946 5.6469 -0.9558 42 1 -1.1528 7.2051 -0.2876 43 1 -2.4096 7.5530 -2.3871 44 1 -0.7053 8.0244 -2.5953 45 1 -1.3947 6.6997 -4.5261 46 1 -1.9870 5.3985 -3.4615 47 1 -1.3528 4.6976 -5.2791 48 1 2.8031 3.7213 1.2945 49 1 3.7427 2.4665 2.1683 50 1 4.9934 4.4636 2.6805 51 1 4.7288 5.1484 1.0474 52 1 6.6847 3.0351 1.9431 53 1 6.8358 4.2306 0.6244 54 1 5.9855 1.4636 0.4381 55 1 6.1366 2.6582 -0.8807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731541180.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:36 Heat of formation + Delta-G solvation = -104.549525 kcal Electronic energy + Delta-G solvation = -32219.982723 eV Core-core repulsion = 28255.631430 eV Total energy + Delta-G solvation = -3964.351293 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.86405 -39.83606 -38.89001 -38.10935 -36.18374 -35.19865 -33.75956 -32.44928 -31.46202 -29.73201 -29.01224 -27.54991 -26.83819 -26.68163 -24.02161 -23.78633 -23.36495 -22.28764 -21.35351 -20.89189 -20.47051 -19.04654 -17.80161 -17.67207 -17.25121 -16.99557 -16.44456 -16.26989 -16.21280 -15.88670 -15.66904 -15.46421 -15.39088 -15.12577 -14.96233 -14.77524 -14.43930 -14.20537 -14.09850 -13.89230 -13.32598 -13.23154 -13.20613 -12.84519 -12.67574 -12.53748 -12.40336 -12.19334 -12.10954 -12.03948 -11.99500 -11.97970 -11.79987 -11.73763 -11.69948 -11.64715 -11.38458 -11.30482 -10.98238 -10.77575 -10.65607 -10.54731 -10.09503 -8.92111 -8.17290 -5.51032 1.53260 1.55749 1.60279 1.77357 2.04222 2.60624 2.71869 3.23996 3.39192 3.45484 3.56754 3.69046 3.81890 3.97899 4.01203 4.03319 4.07180 4.12537 4.21041 4.29884 4.35478 4.38534 4.43740 4.47559 4.50184 4.53246 4.57957 4.60056 4.64456 4.74362 4.77561 4.84772 4.85593 4.93037 4.95649 4.99266 5.00613 5.05010 5.07996 5.10891 5.14848 5.20378 5.26946 5.27010 5.29070 5.29895 5.35753 5.50290 5.56526 5.87879 6.15121 6.41146 6.47605 7.05768 7.18495 7.74132 8.18890 9.01462 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010223 B = 0.003724 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.163642 B = 7517.964249 C = 7963.627426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.043 3.957 4 C -0.097 4.097 5 C -0.072 4.072 6 C 0.518 3.482 7 O -0.583 6.583 8 N -0.713 5.713 9 C 0.148 3.852 10 C 0.167 3.833 11 H 0.029 0.971 12 C -0.121 4.121 13 C -0.103 4.103 14 C -0.131 4.131 15 C 0.158 3.842 16 N -0.609 5.609 17 C -0.345 4.345 18 H 0.044 0.956 19 C -0.068 4.068 20 N -0.946 5.946 21 Si 1.110 2.890 22 H -0.280 1.280 23 H -0.283 1.283 24 H -0.290 1.290 25 C -0.109 4.109 26 C -0.127 4.127 27 C -0.120 4.120 28 C -0.110 4.110 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.054 0.946 35 H 0.111 0.889 36 H 0.408 0.592 37 H 0.036 0.964 38 H 0.044 0.956 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.046 0.954 45 H 0.038 0.962 46 H 0.008 0.992 47 H 0.258 0.742 48 H 0.075 0.925 49 H 0.113 0.887 50 H 0.094 0.906 51 H 0.041 0.959 52 H 0.090 0.910 53 H 0.048 0.952 54 H 0.096 0.904 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.934 -5.826 22.457 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C -0.033 4.033 4 C -0.134 4.134 5 C -0.075 4.075 6 C 0.306 3.694 7 O -0.462 6.462 8 N -0.367 5.367 9 C 0.023 3.977 10 C 0.061 3.939 11 H 0.046 0.954 12 C -0.160 4.160 13 C -0.141 4.141 14 C -0.170 4.170 15 C 0.033 3.967 16 N -0.335 5.335 17 C -0.475 4.475 18 H 0.062 0.938 19 C -0.265 4.265 20 N -0.588 5.588 21 Si 0.935 3.065 22 H -0.206 1.206 23 H -0.209 1.209 24 H -0.216 1.216 25 C -0.146 4.146 26 C -0.164 4.164 27 C -0.157 4.157 28 C -0.148 4.148 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.248 0.752 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.026 0.974 47 H 0.068 0.932 48 H 0.094 0.906 49 H 0.131 0.869 50 H 0.112 0.888 51 H 0.060 0.940 52 H 0.109 0.891 53 H 0.067 0.933 54 H 0.114 0.886 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.562 -5.530 20.220 21.688 hybrid contribution -0.504 0.057 0.745 0.901 sum 5.058 -5.474 20.965 22.250 Atomic orbital electron populations 1.22931 0.79704 1.03748 1.00842 1.87812 1.21155 1.28217 1.95592 1.22991 0.93969 0.85121 1.01254 1.21452 0.93365 0.94694 1.03910 1.21614 0.98349 0.93781 0.93770 1.21144 0.81493 0.80201 0.86569 1.90664 1.51866 1.56824 1.46849 1.46203 1.09719 1.54948 1.25858 1.21047 0.95335 0.94110 0.87176 1.20688 0.91288 0.94196 0.87735 0.95378 1.21974 0.97550 0.98671 0.97780 1.21379 0.95675 1.00324 0.96692 1.21900 1.00899 0.98149 0.96048 1.20746 0.85330 0.93546 0.97076 1.44202 1.14793 1.66215 1.08308 1.20054 0.91445 1.48906 0.87093 0.93839 1.27073 0.99180 0.97868 1.02406 1.70858 1.14021 1.40470 1.33411 0.82895 0.73872 0.76597 0.73120 1.20603 1.20910 1.21643 1.22747 0.98812 0.98955 0.94078 1.22383 0.94532 0.97371 1.02119 1.22105 0.97772 0.97316 0.98555 1.22176 0.91259 1.01103 1.00275 0.91990 0.94796 0.88438 0.90024 0.94253 0.92742 0.87048 0.75247 0.94533 0.93722 0.89743 0.93479 0.91846 0.89984 0.90818 0.93516 0.94351 0.97396 0.93157 0.90650 0.86861 0.88790 0.94035 0.89114 0.93316 0.88582 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -9.14 10.70 -148.98 -1.59 -10.73 16 3 C 0.04 0.86 4.60 71.98 0.33 1.19 16 4 C -0.10 -1.91 4.58 30.60 0.14 -1.77 16 5 C -0.07 -1.53 0.55 -51.85 -0.03 -1.56 16 6 C 0.52 16.50 6.25 87.66 0.55 17.05 16 7 O -0.58 -24.48 15.40 -3.01 -0.05 -24.53 16 8 N -0.71 -21.84 4.00 -463.07 -1.85 -23.70 16 9 C 0.15 6.02 3.90 86.38 0.34 6.35 16 10 C 0.17 6.57 2.94 44.98 0.13 6.70 16 11 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 12 C -0.12 -3.73 5.22 30.67 0.16 -3.57 16 13 C -0.10 -2.93 5.89 30.62 0.18 -2.75 16 14 C -0.13 -4.61 6.06 30.53 0.19 -4.42 16 15 C 0.16 7.30 4.59 86.22 0.40 7.69 16 16 N -0.61 -29.93 2.80 -676.06 -1.89 -31.83 16 17 C -0.34 -19.42 8.23 84.04 0.69 -18.73 16 18 H 0.04 2.55 6.56 -2.91 -0.02 2.53 16 19 C -0.07 -3.94 4.86 84.86 0.41 -3.53 16 20 N -0.95 -57.85 12.56 21.65 0.27 -57.57 16 21 Si 1.11 53.29 29.95 68.60 2.05 55.35 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 C -0.11 -1.59 4.52 31.89 0.14 -1.45 16 26 C -0.13 -2.08 6.61 31.67 0.21 -1.87 16 27 C -0.12 -2.11 6.80 31.32 0.21 -1.89 16 28 C -0.11 -2.30 5.79 31.32 0.18 -2.12 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.03 0.67 8.12 -2.39 -0.02 0.65 16 31 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.14 6.81 -2.39 -0.02 1.13 16 33 H 0.04 0.95 5.56 -2.39 -0.01 0.94 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.11 1.66 8.02 -2.38 -0.02 1.64 16 36 H 0.41 9.75 4.96 -92.71 -0.46 9.30 16 37 H 0.04 1.80 7.14 -2.39 -0.02 1.79 16 38 H 0.04 2.02 7.80 -2.39 -0.02 2.00 16 39 H 0.08 1.99 7.78 -2.39 -0.02 1.97 16 40 H 0.05 1.61 8.12 -2.39 -0.02 1.59 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.04 2.04 6.58 -2.39 -0.02 2.02 16 46 H 0.01 0.38 7.72 -2.39 -0.02 0.36 16 47 H 0.26 15.86 6.32 -92.71 -0.59 15.28 16 48 H 0.07 1.03 6.84 -2.39 -0.02 1.01 16 49 H 0.11 1.04 8.06 -2.39 -0.02 1.02 16 50 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 53 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 54 H 0.10 1.50 7.76 -2.39 -0.02 1.48 16 55 H 0.05 1.47 6.80 -2.39 -0.02 1.45 16 Total: -1.00 -74.44 407.79 3.00 -71.44 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.58 Total: 24.56 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 5.48 Total: -3.00 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -3.47 Total: -113.10 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -1.64 Total: -35.26 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 2.05 Total: 55.35 kcal Total: -74.44 3.00 -71.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731541180.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.108 kcal (2) G-P(sol) polarization free energy of solvation -74.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds