Wall clock time and date at job start Tue Mar 31 2020 22:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00078 * 2 1 4 4 H 1.09002 * 109.46912 * 329.99783 * 3 2 1 5 5 C 1.53005 * 109.47193 * 89.99979 * 3 2 1 6 6 C 1.53004 * 109.47044 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47013 * 300.00005 * 6 5 3 8 8 C 1.52997 * 109.47367 * 59.99878 * 7 6 5 9 9 H 1.09002 * 109.47094 * 59.99895 * 8 7 6 10 10 C 1.50697 * 109.47214 * 179.97438 * 8 7 6 11 11 O 1.21280 * 119.99944 * 29.79761 * 10 8 7 12 12 N 1.34777 * 120.00601 * 209.79092 * 10 8 7 13 13 C 1.46917 * 120.63544 * 174.79623 * 12 10 8 14 14 C 1.53195 * 108.77787 * 126.41201 * 13 12 10 15 15 C 1.53043 * 109.31122 * 54.63593 * 14 13 12 16 16 C 1.52997 * 109.46131 * 178.62950 * 15 14 13 17 17 N 1.46499 * 109.47453 * 185.02792 * 16 15 14 18 18 C 1.46497 * 120.00038 * 270.00109 * 17 16 15 19 19 C 1.36936 * 119.99978 * 89.99366 * 17 16 15 20 20 H 1.07998 * 120.00138 * 17.45266 * 19 17 16 21 21 C 1.38815 * 119.99710 * 197.44886 * 19 17 16 22 22 N 1.31615 * 120.00198 * 15.83793 * 21 19 17 23 23 Si 1.86801 * 120.00038 * 195.83381 * 21 19 17 24 24 H 1.48501 * 109.47302 * 94.97557 * 23 21 19 25 25 H 1.48493 * 109.47317 * 214.98030 * 23 21 19 26 26 H 1.48503 * 109.47120 * 334.97952 * 23 21 19 27 27 C 1.53039 * 109.53726 * 298.63557 * 15 14 13 28 28 C 1.46933 * 120.62533 * 354.81818 * 12 10 8 29 29 C 1.52994 * 109.47159 * 300.00007 * 8 7 6 30 30 H 1.09003 * 109.47463 * 300.00219 * 1 2 3 31 31 H 1.08999 * 109.47382 * 59.99999 * 1 2 3 32 32 H 1.09004 * 109.47384 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47113 * 60.00041 * 5 3 2 34 34 H 1.08999 * 109.46896 * 299.99720 * 5 3 2 35 35 H 1.08997 * 109.46788 * 179.97438 * 6 5 3 36 36 H 1.09002 * 109.47005 * 59.99838 * 6 5 3 37 37 H 1.09002 * 109.47099 * 299.99776 * 7 6 5 38 38 H 1.08999 * 109.46811 * 180.02562 * 7 6 5 39 39 H 1.08996 * 109.58686 * 6.62489 * 13 12 10 40 40 H 1.09006 * 109.70352 * 246.27013 * 13 12 10 41 41 H 1.08993 * 109.49874 * 294.68237 * 14 13 12 42 42 H 1.08998 * 109.49287 * 174.58222 * 14 13 12 43 43 H 1.09008 * 109.46152 * 58.65412 * 15 14 13 44 44 H 1.08998 * 109.46766 * 305.02768 * 16 15 14 45 45 H 1.08999 * 109.47058 * 65.02274 * 16 15 14 46 46 H 1.09007 * 109.47275 * 95.06790 * 18 17 16 47 47 H 1.08993 * 109.47714 * 215.07726 * 18 17 16 48 48 H 1.09004 * 109.46706 * 335.07675 * 18 17 16 49 49 H 0.97006 * 119.99905 * 179.97438 * 22 21 19 50 50 H 1.09000 * 109.49994 * 181.31639 * 27 15 14 51 51 H 1.09004 * 109.50011 * 301.41616 * 27 15 14 52 52 H 1.09007 * 109.58646 * 353.36976 * 28 12 10 53 53 H 1.08990 * 109.58759 * 113.79801 * 28 12 10 54 54 H 1.09007 * 109.47136 * 179.97438 * 29 8 7 55 55 H 1.08996 * 109.47676 * 299.99754 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2176 1.7713 1.4425 6 6 2.8394 3.1694 1.4425 7 6 4.1879 3.1277 0.7211 8 6 3.9806 2.6617 -0.7214 9 1 3.3149 3.3554 -1.2351 10 6 5.3088 2.6213 -1.4321 11 8 6.3238 2.3954 -0.8080 12 7 5.3688 2.8361 -2.7613 13 6 6.6645 2.9128 -3.4496 14 6 6.6629 1.9197 -4.6160 15 6 5.4561 2.1972 -5.5154 16 6 5.4700 1.2293 -6.7002 17 7 4.3852 1.5716 -7.6233 18 6 3.0628 0.9634 -7.4572 19 6 4.6071 2.4603 -8.6412 20 1 5.6172 2.6929 -8.9443 21 6 3.5337 3.0620 -9.2835 22 7 2.3379 3.0335 -8.7343 23 14 3.7862 3.9124 -10.9274 24 1 3.4601 2.9699 -12.0277 25 1 2.8977 5.0991 -11.0126 26 1 5.2019 4.3443 -11.0490 27 6 4.1661 2.0042 -4.7149 28 6 4.1394 2.9983 -3.5496 29 6 3.3588 1.2638 -0.7214 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.8829 1.0775 1.9563 34 1 1.2568 1.8015 1.9563 35 1 2.9867 3.5014 2.4701 36 1 2.1738 3.8630 0.9287 37 1 4.8536 2.4341 1.2348 38 1 4.6311 4.1236 0.7215 39 1 7.4636 2.6577 -2.7536 40 1 6.8195 3.9227 -3.8296 41 1 6.6014 0.9030 -4.2281 42 1 7.5806 2.0347 -5.1928 43 1 5.5053 3.2222 -5.8832 44 1 6.4257 1.3040 -7.2190 45 1 5.3316 0.2104 -6.3386 46 1 2.4266 1.6302 -6.8753 47 1 2.6143 0.7959 -8.4364 48 1 3.1638 0.0112 -6.9362 49 1 1.5879 3.4543 -9.1830 50 1 3.3067 2.1792 -5.3621 51 1 4.1280 0.9867 -4.3259 52 1 3.2724 2.7995 -2.9195 53 1 4.0859 4.0153 -3.9379 54 1 3.2107 0.9320 -1.7491 55 1 4.0244 0.5701 -0.2077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732088484.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:49 Heat of formation + Delta-G solvation = -95.172316 kcal Electronic energy + Delta-G solvation = -31516.425298 eV Core-core repulsion = 27552.480631 eV Total energy + Delta-G solvation = -3963.944667 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.68373 -39.93012 -38.96743 -37.25923 -37.00022 -34.54440 -32.96495 -32.13843 -31.54937 -30.99048 -28.64135 -27.78478 -27.30539 -25.53456 -24.50334 -23.82278 -23.33830 -22.39535 -21.45930 -20.87444 -19.74429 -18.66991 -18.30019 -17.54833 -16.87754 -16.79435 -16.37110 -16.28189 -15.96079 -15.73641 -15.55979 -15.47342 -15.16698 -14.86203 -14.81695 -14.60898 -14.24631 -14.12982 -13.88904 -13.66936 -13.45430 -13.12807 -13.07078 -13.00043 -12.74631 -12.65328 -12.49298 -12.34422 -12.33143 -12.17034 -12.01733 -11.98259 -11.90609 -11.75295 -11.66889 -11.51186 -11.48204 -11.24766 -11.19561 -10.76001 -10.54647 -10.33596 -9.67115 -8.74271 -7.78123 -5.18537 1.47633 1.50111 1.52113 1.57448 1.98534 2.54812 2.80818 3.35252 3.38498 3.62634 3.70004 3.81695 3.92254 3.94070 4.06935 4.12003 4.15768 4.19228 4.22261 4.29523 4.34270 4.38552 4.42495 4.50685 4.56633 4.58258 4.60385 4.61299 4.76317 4.81009 4.87864 4.88252 4.89161 4.96065 5.00226 5.03460 5.06649 5.09142 5.13314 5.13970 5.18160 5.22130 5.27719 5.36142 5.42739 5.45020 5.59158 5.64807 5.70155 5.84736 6.30401 6.36746 6.40522 7.12098 7.21334 7.95081 8.36859 9.25726 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.002902 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.626050 B = 9647.327703 C =10787.763854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.092 3.908 4 H 0.077 0.923 5 C -0.138 4.138 6 C -0.108 4.108 7 C -0.101 4.101 8 C -0.097 4.097 9 H 0.112 0.888 10 C 0.518 3.482 11 O -0.582 6.582 12 N -0.605 5.605 13 C 0.112 3.888 14 C -0.115 4.115 15 C -0.097 4.097 16 C 0.155 3.845 17 N -0.616 5.616 18 C 0.181 3.819 19 C -0.254 4.254 20 H 0.068 0.932 21 C -0.051 4.051 22 N -0.934 5.934 23 Si 0.959 3.041 24 H -0.292 1.292 25 H -0.296 1.296 26 H -0.271 1.271 27 C -0.116 4.116 28 C 0.113 3.887 29 C -0.101 4.101 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.043 0.957 45 H 0.048 0.952 46 H 0.015 0.985 47 H 0.013 0.987 48 H 0.021 0.979 49 H 0.246 0.754 50 H 0.067 0.933 51 H 0.057 0.943 52 H 0.102 0.898 53 H 0.068 0.932 54 H 0.068 0.932 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.943 -0.730 20.540 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.035 3.965 4 H 0.095 0.905 5 C -0.175 4.175 6 C -0.146 4.146 7 C -0.139 4.139 8 C -0.118 4.118 9 H 0.130 0.870 10 C 0.308 3.692 11 O -0.462 6.462 12 N -0.337 5.337 13 C -0.010 4.010 14 C -0.154 4.154 15 C -0.118 4.118 16 C 0.029 3.971 17 N -0.339 5.339 18 C 0.036 3.964 19 C -0.384 4.384 20 H 0.086 0.914 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.789 3.211 24 H -0.219 1.219 25 H -0.223 1.223 26 H -0.196 1.196 27 C -0.154 4.154 28 C -0.009 4.009 29 C -0.139 4.139 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.033 0.967 47 H 0.031 0.969 48 H 0.040 0.960 49 H 0.055 0.945 50 H 0.086 0.914 51 H 0.076 0.924 52 H 0.120 0.880 53 H 0.087 0.913 54 H 0.087 0.913 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.435 -0.966 20.779 20.851 hybrid contribution -0.171 0.623 -1.371 1.516 sum -1.606 -0.342 19.408 19.477 Atomic orbital electron populations 1.22958 0.79645 1.03639 1.00877 1.87882 1.21286 1.28488 1.95233 1.22127 0.93669 0.84590 0.96143 0.90469 1.22023 1.01917 0.97358 0.96237 1.21473 0.95179 0.96367 1.01567 1.21406 0.98537 1.01514 0.92436 1.21309 0.93354 0.99134 0.98002 0.87006 1.21040 0.91624 0.74933 0.81623 1.90635 1.38305 1.50740 1.66544 1.48271 1.08092 1.70309 1.07056 1.21590 0.85365 0.99790 0.94255 1.21831 0.98792 0.99033 0.95767 1.21621 0.94312 1.00252 0.95598 1.20988 0.90780 0.95871 0.89462 1.44171 1.08562 1.49329 1.31799 1.20587 0.85912 0.92311 0.97595 1.19508 0.92603 1.17649 1.08673 0.91380 1.25516 0.96109 1.00679 1.02320 1.70228 1.00323 1.49149 1.38449 0.85359 0.77371 0.77432 0.80953 1.21944 1.22318 1.19628 1.21828 0.98964 0.98598 0.96045 1.21854 0.86306 0.99751 0.93019 1.21420 0.96200 0.94929 1.01328 0.92708 0.93409 0.88965 0.92109 0.90319 0.89858 0.90256 0.92278 0.91404 0.89918 0.91047 0.92070 0.89939 0.93353 0.93826 0.93343 0.96731 0.96862 0.96044 0.94497 0.91417 0.92430 0.87968 0.91341 0.91341 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.58 16 2 O -0.41 -8.50 10.35 -148.98 -1.54 -10.04 16 3 C 0.09 1.62 2.61 30.60 0.08 1.70 16 4 H 0.08 1.14 7.79 -2.39 -0.02 1.12 16 5 C -0.14 -2.01 5.54 30.60 0.17 -1.84 16 6 C -0.11 -1.39 5.92 30.59 0.18 -1.21 16 7 C -0.10 -1.85 4.80 30.59 0.15 -1.70 16 8 C -0.10 -1.96 1.67 -11.54 -0.02 -1.98 16 9 H 0.11 1.86 6.47 -2.39 -0.02 1.84 16 10 C 0.52 14.13 6.75 87.66 0.59 14.72 16 11 O -0.58 -19.75 15.59 -3.03 -0.05 -19.79 16 12 N -0.61 -16.11 2.97 -818.90 -2.43 -18.55 16 13 C 0.11 3.01 6.44 86.37 0.56 3.57 16 14 C -0.12 -3.17 5.36 30.67 0.16 -3.00 16 15 C -0.10 -3.24 2.36 -10.77 -0.03 -3.26 16 16 C 0.15 5.95 5.18 86.38 0.45 6.40 16 17 N -0.62 -29.50 2.75 -726.95 -2.00 -31.51 16 18 C 0.18 8.59 7.86 127.77 1.00 9.59 16 19 C -0.25 -13.53 9.70 84.03 0.82 -12.71 16 20 H 0.07 3.57 7.86 -2.91 -0.02 3.54 16 21 C -0.05 -2.80 5.06 84.86 0.43 -2.37 16 22 N -0.93 -53.16 10.55 21.65 0.23 -52.94 16 23 Si 0.96 44.41 29.58 68.60 2.03 46.44 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 C -0.12 -3.66 4.97 30.67 0.15 -3.51 16 28 C 0.11 2.90 6.15 86.36 0.53 3.43 16 29 C -0.10 -2.11 4.67 30.59 0.14 -1.97 16 30 H 0.05 0.60 7.87 -2.39 -0.02 0.58 16 31 H 0.05 0.64 8.08 -2.39 -0.02 0.62 16 32 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 0.94 7.87 -2.39 -0.02 0.92 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 1.30 7.86 -2.39 -0.02 1.28 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 2.31 7.00 -2.39 -0.02 2.29 16 40 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.05 1.87 8.14 -2.38 -0.02 1.86 16 44 H 0.04 1.66 8.03 -2.39 -0.02 1.64 16 45 H 0.05 1.73 7.86 -2.39 -0.02 1.71 16 46 H 0.01 0.73 5.97 -2.38 -0.01 0.72 16 47 H 0.01 0.68 7.03 -2.39 -0.02 0.66 16 48 H 0.02 0.88 7.84 -2.38 -0.02 0.86 16 49 H 0.25 13.71 8.31 -92.70 -0.77 12.94 16 50 H 0.07 2.58 5.45 -2.39 -0.01 2.57 16 51 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 52 H 0.10 2.15 5.06 -2.38 -0.01 2.14 16 53 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 54 H 0.07 1.54 7.62 -2.38 -0.02 1.52 16 55 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -65.51 410.62 3.66 -61.85 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.84 Total: 17.11 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 6.59 Total: 7.42 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -4.21 Total: -102.99 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -1.59 Total: -29.83 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -65.51 3.66 -61.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732088484.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.322 kcal (2) G-P(sol) polarization free energy of solvation -65.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds