Wall clock time and date at job start Tue Mar 31 2020 22:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00084 * 2 1 4 4 H 1.09000 * 109.47152 * 329.99386 * 3 2 1 5 5 C 1.53003 * 109.47123 * 90.00148 * 3 2 1 6 6 C 1.52997 * 109.46807 * 180.02562 * 5 3 2 7 7 C 1.53007 * 109.47262 * 299.99435 * 6 5 3 8 8 C 1.52999 * 109.46955 * 60.00232 * 7 6 5 9 9 H 1.08997 * 109.47062 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47096 * 60.00015 * 8 7 6 11 11 O 1.21283 * 120.00101 * 350.28807 * 10 8 7 12 12 N 1.34777 * 120.00297 * 170.28462 * 10 8 7 13 13 C 1.46927 * 120.62476 * 4.28627 * 12 10 8 14 14 C 1.52762 * 109.00860 * 233.58087 * 13 12 10 15 15 C 1.53049 * 109.38335 * 305.59464 * 14 13 12 16 16 C 1.52995 * 109.44968 * 181.25360 * 15 14 13 17 17 N 1.46502 * 109.47481 * 64.93288 * 16 15 14 18 18 C 1.46494 * 120.00122 * 270.00534 * 17 16 15 19 19 C 1.36932 * 119.99840 * 89.99888 * 17 16 15 20 20 H 1.08004 * 120.00142 * 18.34513 * 19 17 16 21 21 C 1.38809 * 120.00260 * 198.34331 * 19 17 16 22 22 N 1.31616 * 119.99926 * 14.72571 * 21 19 17 23 23 Si 1.86803 * 120.00324 * 194.72067 * 21 19 17 24 24 H 1.48503 * 109.46947 * 60.00034 * 23 21 19 25 25 H 1.48492 * 109.47232 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47047 * 300.00402 * 23 21 19 27 27 C 1.53035 * 109.53774 * 61.23653 * 15 14 13 28 28 C 1.46919 * 120.63462 * 184.56541 * 12 10 8 29 29 C 1.53003 * 109.47335 * 300.00261 * 8 7 6 30 30 H 1.09001 * 109.47023 * 300.00572 * 1 2 3 31 31 H 1.09000 * 109.46955 * 59.99857 * 1 2 3 32 32 H 1.08997 * 109.47501 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47020 * 59.99828 * 5 3 2 34 34 H 1.09001 * 109.46574 * 299.99465 * 5 3 2 35 35 H 1.09000 * 109.47791 * 59.99609 * 6 5 3 36 36 H 1.09008 * 109.47118 * 179.97438 * 6 5 3 37 37 H 1.08995 * 109.47045 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.46859 * 300.00744 * 7 6 5 39 39 H 1.08994 * 109.59135 * 353.42019 * 13 12 10 40 40 H 1.09005 * 109.58787 * 113.84452 * 13 12 10 41 41 H 1.08994 * 109.56549 * 185.55581 * 14 13 12 42 42 H 1.08997 * 109.35599 * 65.50054 * 14 13 12 43 43 H 1.09006 * 109.45248 * 301.21586 * 15 14 13 44 44 H 1.08992 * 109.47175 * 184.93744 * 16 15 14 45 45 H 1.09000 * 109.46791 * 304.93628 * 16 15 14 46 46 H 1.08999 * 109.47680 * 95.31457 * 18 17 16 47 47 H 1.09002 * 109.47268 * 215.31008 * 18 17 16 48 48 H 1.08997 * 109.47388 * 335.31170 * 18 17 16 49 49 H 0.96999 * 120.00300 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.49760 * 178.68491 * 27 15 14 51 51 H 1.08997 * 109.50039 * 58.58733 * 27 15 14 52 52 H 1.09004 * 109.59030 * 246.15753 * 28 12 10 53 53 H 1.09003 * 109.58863 * 6.43821 * 28 12 10 54 54 H 1.09000 * 109.47199 * 179.97438 * 29 8 7 55 55 H 1.09000 * 109.46910 * 300.00321 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7713 1.4425 6 6 2.8394 3.1693 1.4424 7 6 4.1881 3.1276 0.7210 8 6 3.9807 2.6617 -0.7214 9 1 4.9414 2.6325 -1.2355 10 6 3.0604 3.6207 -1.4317 11 8 2.4757 4.4778 -0.8036 12 7 2.8872 3.5261 -2.7650 13 6 3.5141 2.4366 -3.5257 14 6 4.3233 3.0341 -4.6754 15 6 3.4221 3.9468 -5.5103 16 6 4.2229 4.5215 -6.6804 17 7 4.6189 3.4360 -7.5811 18 6 5.8901 2.7384 -7.3729 19 6 3.8007 3.0736 -8.6176 20 1 3.0300 3.7489 -8.9588 21 6 3.9618 1.8382 -9.2297 22 7 4.6864 0.9055 -8.6490 23 14 3.1502 1.4994 -10.8778 24 1 3.6531 2.4674 -11.8855 25 1 3.4735 0.1173 -11.3139 26 1 1.6784 1.6442 -10.7438 27 6 2.9029 5.0912 -4.6370 28 6 2.0729 4.5138 -3.4861 29 6 3.3589 1.2637 -0.7215 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 2.8829 1.0774 1.9563 34 1 1.2568 1.8015 1.9563 35 1 2.1739 3.8630 0.9287 36 1 2.9868 3.5014 2.4702 37 1 4.6312 4.1235 0.7214 38 1 4.8536 2.4339 1.2348 39 1 4.1754 1.8679 -2.8721 40 1 2.7421 1.7806 -3.9282 41 1 4.7114 2.2325 -5.3038 42 1 5.1528 3.6136 -4.2704 43 1 2.5794 3.3720 -5.8946 44 1 3.6081 5.2387 -7.2241 45 1 5.1139 5.0213 -6.3002 46 1 5.7171 1.8343 -6.7891 47 1 6.3201 2.4707 -8.3381 48 1 6.5791 3.3908 -6.8366 49 1 4.7987 0.0421 -9.0765 50 1 2.2800 5.7537 -5.2379 51 1 3.7458 5.6514 -4.2323 52 1 1.1810 4.0307 -3.8852 53 1 1.7815 5.3139 -2.8056 54 1 3.2107 0.9320 -1.7491 55 1 4.0244 0.5701 -0.2077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732088486.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:53 Heat of formation + Delta-G solvation = -84.871116 kcal Electronic energy + Delta-G solvation = -31931.849637 eV Core-core repulsion = 27968.351664 eV Total energy + Delta-G solvation = -3963.497973 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.96033 -39.86266 -38.88618 -37.27362 -36.80583 -34.61501 -32.99043 -32.08843 -31.48568 -30.95951 -28.63429 -27.78607 -27.38996 -25.56737 -24.39570 -23.91551 -23.18176 -22.48998 -21.74897 -20.94866 -19.59468 -18.63495 -18.15929 -17.73181 -16.84420 -16.74216 -16.46148 -16.16359 -16.04996 -15.66608 -15.58310 -15.48624 -15.08342 -14.88166 -14.68248 -14.58056 -14.38666 -14.04376 -13.75221 -13.70721 -13.37506 -13.11571 -13.04296 -12.91170 -12.83813 -12.70938 -12.64980 -12.49806 -12.34428 -12.12613 -12.01477 -11.96631 -11.92892 -11.78366 -11.68642 -11.49178 -11.38820 -11.22826 -11.12767 -10.55143 -10.44937 -10.29658 -9.62950 -8.72433 -7.77599 -5.19072 1.47887 1.49848 1.55754 1.60049 2.02027 2.54797 2.71053 3.35609 3.41837 3.66471 3.70712 3.78590 3.84990 4.00781 4.06360 4.13817 4.18953 4.21065 4.22604 4.27865 4.37810 4.43868 4.44778 4.46833 4.49173 4.60221 4.63610 4.65320 4.78068 4.78364 4.83137 4.88900 4.89879 4.95840 4.98554 5.03816 5.07093 5.10222 5.15200 5.15565 5.19497 5.26786 5.30033 5.39201 5.43619 5.56706 5.60963 5.69258 5.70961 5.87051 6.20159 6.37568 6.45246 7.18811 7.21945 7.96101 8.37363 9.25635 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015315 B = 0.002897 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.820741 B = 9661.658535 C =10416.123792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.088 3.912 4 H 0.039 0.961 5 C -0.131 4.131 6 C -0.134 4.134 7 C -0.096 4.096 8 C -0.102 4.102 9 H 0.119 0.881 10 C 0.517 3.483 11 O -0.567 6.567 12 N -0.605 5.605 13 C 0.112 3.888 14 C -0.118 4.118 15 C -0.097 4.097 16 C 0.155 3.845 17 N -0.616 5.616 18 C 0.180 3.820 19 C -0.257 4.257 20 H 0.067 0.933 21 C -0.051 4.051 22 N -0.934 5.934 23 Si 0.959 3.041 24 H -0.283 1.283 25 H -0.296 1.296 26 H -0.279 1.279 27 C -0.114 4.114 28 C 0.114 3.886 29 C -0.112 4.112 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.052 0.948 46 H 0.014 0.986 47 H 0.011 0.989 48 H 0.024 0.976 49 H 0.246 0.754 50 H 0.080 0.920 51 H 0.067 0.933 52 H 0.061 0.939 53 H 0.086 0.914 54 H 0.075 0.925 55 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 2.568 20.416 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C 0.031 3.969 4 H 0.057 0.943 5 C -0.168 4.168 6 C -0.171 4.171 7 C -0.133 4.133 8 C -0.123 4.123 9 H 0.137 0.863 10 C 0.307 3.693 11 O -0.448 6.448 12 N -0.337 5.337 13 C -0.010 4.010 14 C -0.156 4.156 15 C -0.118 4.118 16 C 0.029 3.971 17 N -0.339 5.339 18 C 0.036 3.964 19 C -0.387 4.387 20 H 0.085 0.915 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.789 3.211 24 H -0.210 1.210 25 H -0.222 1.222 26 H -0.205 1.205 27 C -0.153 4.153 28 C -0.008 4.008 29 C -0.149 4.149 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.032 0.968 47 H 0.030 0.970 48 H 0.043 0.957 49 H 0.055 0.945 50 H 0.099 0.901 51 H 0.086 0.914 52 H 0.079 0.921 53 H 0.104 0.896 54 H 0.093 0.907 55 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.902 2.702 20.661 21.038 hybrid contribution -0.814 -0.308 -1.422 1.667 sum -3.716 2.394 19.239 19.740 Atomic orbital electron populations 1.22908 0.80166 1.03725 1.00134 1.87847 1.20793 1.28189 1.95225 1.22151 0.94591 0.83723 0.96451 0.94294 1.21955 1.01426 0.97638 0.95829 1.21807 0.97690 0.96601 1.01029 1.21368 0.97921 1.01871 0.92176 1.21387 0.99143 0.93577 0.98205 0.86345 1.21085 0.81929 0.84871 0.81459 1.90541 1.50463 1.38643 1.65134 1.48255 1.50237 1.28386 1.06856 1.21829 0.96938 0.88470 0.93795 1.21778 0.97939 0.99888 0.95964 1.21621 0.98120 0.96349 0.95752 1.20994 0.96724 0.89574 0.89770 1.44154 1.19035 1.39356 1.31338 1.20593 0.85039 0.93397 0.97419 1.19455 1.13023 0.98281 1.07945 0.91499 1.25538 1.01337 0.95474 1.02238 1.70209 1.45307 1.04056 1.38553 0.85460 0.78365 0.76291 0.81033 1.20955 1.22215 1.20520 1.21823 1.00003 0.97569 0.95880 1.21554 0.93286 0.92061 0.93933 1.21725 0.95850 0.95421 1.01929 0.93352 0.94566 0.88092 0.90470 0.92237 0.90522 0.91082 0.91696 0.89123 0.87543 0.92389 0.91611 0.91685 0.93959 0.93968 0.92974 0.96754 0.97010 0.95743 0.94500 0.90123 0.91438 0.92052 0.89611 0.90660 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.82 113.37 1.23 1.72 16 2 O -0.40 -9.25 10.35 -148.98 -1.54 -10.79 16 3 C 0.09 1.92 2.39 30.60 0.07 1.99 16 4 H 0.04 1.00 6.86 -2.39 -0.02 0.98 16 5 C -0.13 -2.47 5.54 30.59 0.17 -2.30 16 6 C -0.13 -2.61 5.63 30.60 0.17 -2.44 16 7 C -0.10 -1.67 5.17 30.60 0.16 -1.51 16 8 C -0.10 -1.96 2.16 -11.54 -0.02 -1.98 16 9 H 0.12 1.91 7.37 -2.39 -0.02 1.89 16 10 C 0.52 13.10 5.60 87.66 0.49 13.59 16 11 O -0.57 -17.17 12.79 -3.04 -0.04 -17.21 16 12 N -0.61 -15.57 2.98 -819.74 -2.44 -18.02 16 13 C 0.11 2.90 5.16 86.22 0.44 3.35 16 14 C -0.12 -3.62 4.95 30.53 0.15 -3.47 16 15 C -0.10 -3.21 2.36 -10.77 -0.03 -3.24 16 16 C 0.16 5.86 5.18 86.38 0.45 6.31 16 17 N -0.62 -29.38 2.75 -726.97 -2.00 -31.38 16 18 C 0.18 8.49 7.85 127.77 1.00 9.49 16 19 C -0.26 -13.71 9.70 84.03 0.82 -12.90 16 20 H 0.07 3.51 7.85 -2.91 -0.02 3.48 16 21 C -0.05 -2.79 5.08 84.86 0.43 -2.36 16 22 N -0.93 -53.45 10.53 21.65 0.23 -53.22 16 23 Si 0.96 44.60 29.58 68.60 2.03 46.63 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 C -0.11 -3.00 5.36 30.67 0.16 -2.84 16 28 C 0.11 2.98 6.42 86.36 0.55 3.53 16 29 C -0.11 -2.15 4.70 30.60 0.14 -2.01 16 30 H 0.05 0.78 7.87 -2.39 -0.02 0.76 16 31 H 0.04 0.68 8.08 -2.39 -0.02 0.67 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.10 7.87 -2.39 -0.02 1.09 16 35 H 0.08 1.95 5.18 -2.39 -0.01 1.94 16 36 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.11 2.27 4.58 -2.39 -0.01 2.26 16 40 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.07 2.50 5.45 -2.39 -0.01 2.49 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.04 1.58 8.03 -2.39 -0.02 1.56 16 45 H 0.05 1.79 7.86 -2.39 -0.02 1.77 16 46 H 0.01 0.72 5.95 -2.39 -0.01 0.71 16 47 H 0.01 0.59 7.08 -2.39 -0.02 0.58 16 48 H 0.02 0.98 7.83 -2.39 -0.02 0.96 16 49 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 50 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 51 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 53 H 0.09 2.27 7.03 -2.39 -0.02 2.25 16 54 H 0.07 1.56 5.64 -2.39 -0.01 1.55 16 55 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -63.58 400.91 3.48 -60.11 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.85 Total: 18.93 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 6.40 Total: 4.94 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -4.21 Total: -102.61 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -1.58 Total: -28.00 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -63.58 3.48 -60.11 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732088486.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.766 kcal (2) G-P(sol) polarization free energy of solvation -63.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds