Wall clock time and date at job start Tue Mar 31 2020 22:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99965 * 2 1 4 4 H 1.08998 * 109.47654 * 29.99359 * 3 2 1 5 5 C 1.53007 * 109.47001 * 269.99648 * 3 2 1 6 6 C 1.52999 * 109.47018 * 300.00370 * 5 3 2 7 7 C 1.52998 * 109.47147 * 299.99756 * 6 5 3 8 8 C 1.52994 * 109.47008 * 60.00042 * 7 6 5 9 9 H 1.09006 * 109.47442 * 60.00288 * 8 7 6 10 10 C 1.50705 * 109.47093 * 180.02562 * 8 7 6 11 11 O 1.21277 * 120.00285 * 86.69694 * 10 8 7 12 12 N 1.34778 * 119.99564 * 266.69242 * 10 8 7 13 13 C 1.46930 * 120.62603 * 185.30341 * 12 10 8 14 14 C 1.53189 * 108.77457 * 233.63106 * 13 12 10 15 15 C 1.53035 * 109.31508 * 305.36828 * 14 13 12 16 16 C 1.53005 * 109.46080 * 181.38424 * 15 14 13 17 17 N 1.46493 * 109.47426 * 174.99883 * 16 15 14 18 18 C 1.46508 * 120.00396 * 270.00599 * 17 16 15 19 19 C 1.36935 * 119.99871 * 89.99725 * 17 16 15 20 20 H 1.08000 * 120.00292 * 217.29358 * 19 17 16 21 21 C 1.38811 * 120.00025 * 37.29818 * 19 17 16 22 22 N 1.31624 * 120.00042 * 26.32383 * 21 19 17 23 23 Si 1.86797 * 120.00205 * 206.32597 * 21 19 17 24 24 H 1.48499 * 109.46937 * 89.99833 * 23 21 19 25 25 H 1.48502 * 109.47430 * 329.99788 * 23 21 19 26 26 H 1.48497 * 109.47224 * 209.99638 * 23 21 19 27 27 C 1.53035 * 109.53999 * 61.36788 * 15 14 13 28 28 C 1.46920 * 120.63682 * 5.33025 * 12 10 8 29 29 C 1.52998 * 109.47067 * 149.99951 * 3 2 1 30 30 H 1.08993 * 109.47439 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47027 * 300.00619 * 1 2 3 32 32 H 1.09005 * 109.47204 * 59.99931 * 1 2 3 33 33 H 1.08997 * 109.47012 * 180.02562 * 5 3 2 34 34 H 1.09004 * 109.46553 * 60.00286 * 5 3 2 35 35 H 1.09001 * 109.46895 * 179.97438 * 6 5 3 36 36 H 1.09000 * 109.46992 * 59.99794 * 6 5 3 37 37 H 1.08997 * 109.47127 * 300.00440 * 7 6 5 38 38 H 1.09000 * 109.47152 * 180.02562 * 7 6 5 39 39 H 1.09004 * 109.58564 * 113.84754 * 13 12 10 40 40 H 1.08998 * 109.58732 * 353.42176 * 13 12 10 41 41 H 1.09004 * 109.49630 * 185.41753 * 14 13 12 42 42 H 1.09001 * 109.52699 * 65.33872 * 14 13 12 43 43 H 1.09000 * 109.46071 * 301.35823 * 15 14 13 44 44 H 1.09005 * 109.47079 * 55.00235 * 16 15 14 45 45 H 1.08999 * 109.47150 * 295.00517 * 16 15 14 46 46 H 1.09005 * 109.46435 * 266.79745 * 18 17 16 47 47 H 1.08997 * 109.46749 * 26.79202 * 18 17 16 48 48 H 1.08997 * 109.47153 * 146.79857 * 18 17 16 49 49 H 0.97005 * 119.99381 * 5.69750 * 22 21 19 50 50 H 1.08995 * 109.50126 * 58.58390 * 27 15 14 51 51 H 1.08994 * 109.50209 * 178.68480 * 27 15 14 52 52 H 1.08995 * 109.59026 * 246.15817 * 28 12 10 53 53 H 1.09002 * 109.58406 * 6.58062 * 28 12 10 54 54 H 1.09001 * 109.47208 * 299.99720 * 29 3 2 55 55 H 1.09000 * 109.47205 * 179.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2178 1.7713 -1.4426 6 6 3.1515 0.7972 -2.1637 7 6 4.5002 0.7550 -1.4425 8 6 4.2927 0.2892 0.0000 9 1 3.8493 -0.7066 0.0001 10 6 5.6210 0.2482 0.7106 11 8 6.0520 1.2460 1.2487 12 7 6.3300 -0.8974 0.7482 13 6 7.5688 -0.9856 1.5335 14 6 8.6952 -1.4846 0.6230 15 6 8.2710 -2.8011 -0.0319 16 6 9.4073 -3.3202 -0.9153 17 7 9.0494 -4.6373 -1.4475 18 6 9.4030 -5.8489 -0.7035 19 6 8.3842 -4.7361 -2.6403 20 1 7.6253 -5.4927 -2.7744 21 6 8.6853 -3.8637 -3.6773 22 7 9.8801 -3.3165 -3.7509 23 14 7.3949 -3.4664 -4.9681 24 1 6.6077 -2.2846 -4.5337 25 1 6.4882 -4.6304 -5.1364 26 1 8.0628 -3.1684 -6.2604 27 6 7.0247 -2.5682 -0.8889 28 6 5.8793 -2.0816 0.0045 29 6 3.3589 1.2632 0.7213 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 2.6615 2.7668 -1.4426 34 1 1.2569 1.8013 -1.9564 35 1 3.2990 1.1288 -3.1915 36 1 2.7081 -0.1986 -2.1637 37 1 4.9435 1.7507 -1.4425 38 1 5.1656 0.0613 -1.9565 39 1 7.4294 -1.6841 2.3586 40 1 7.8243 -0.0009 1.9248 41 1 9.5964 -1.6463 1.2145 42 1 8.8954 -0.7419 -0.1494 43 1 8.0476 -3.5359 0.7415 44 1 10.3189 -3.4030 -0.3235 45 1 9.5716 -2.6273 -1.7405 46 1 10.3635 -6.2246 -1.0565 47 1 9.4724 -5.6155 0.3589 48 1 8.6364 -6.6078 -0.8596 49 1 10.5755 -3.5849 -3.1302 50 1 7.2400 -1.8152 -1.6470 51 1 6.7369 -3.5011 -1.3736 52 1 5.6021 -2.8694 0.7048 53 1 5.0201 -1.8199 -0.6132 54 1 3.2111 0.9313 1.7489 55 1 3.8025 2.2589 0.7209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732088489.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:57 Heat of formation + Delta-G solvation = -100.052893 kcal Electronic energy + Delta-G solvation = -32101.301041 eV Core-core repulsion = 28137.144736 eV Total energy + Delta-G solvation = -3964.156305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.67691 -40.02925 -39.00396 -37.27534 -36.77958 -34.25987 -33.03002 -32.38270 -31.67241 -31.05890 -28.72369 -27.37920 -27.30252 -25.58105 -24.48997 -23.76614 -23.53190 -22.51903 -21.35818 -20.67025 -19.74306 -19.20173 -18.35335 -17.44230 -16.76979 -16.41540 -16.23503 -16.13829 -16.02283 -16.00460 -15.68107 -15.47918 -15.26057 -14.93306 -14.84076 -14.53494 -14.21324 -14.04761 -13.81781 -13.66979 -13.50579 -13.24305 -13.21121 -13.05900 -12.87303 -12.68730 -12.55830 -12.33205 -12.26385 -12.22386 -12.17113 -11.94806 -11.84979 -11.76678 -11.58896 -11.41224 -11.31597 -11.21213 -11.08600 -10.63140 -10.39058 -10.32608 -9.65025 -8.79768 -8.09986 -5.45580 1.55913 1.57879 1.63395 1.79495 2.02145 2.66446 2.91454 3.23985 3.40612 3.61909 3.70154 3.77038 3.83252 3.96853 4.05719 4.11852 4.18218 4.20231 4.22906 4.36154 4.39269 4.42102 4.45060 4.56530 4.58802 4.61479 4.64656 4.66891 4.69669 4.75763 4.76742 4.82701 4.86349 4.88958 4.95840 5.01752 5.04298 5.04965 5.10721 5.12396 5.14620 5.21228 5.23151 5.26324 5.31945 5.43075 5.48104 5.65466 5.69312 5.98593 6.35935 6.40563 6.44313 7.12941 7.16676 7.82767 8.28644 9.01795 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012051 B = 0.003670 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.892300 B = 7628.588391 C = 8794.378622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.093 3.907 4 H 0.081 0.919 5 C -0.138 4.138 6 C -0.108 4.108 7 C -0.107 4.107 8 C -0.095 4.095 9 H 0.105 0.895 10 C 0.515 3.485 11 O -0.585 6.585 12 N -0.608 5.608 13 C 0.117 3.883 14 C -0.119 4.119 15 C -0.085 4.085 16 C 0.147 3.853 17 N -0.616 5.616 18 C 0.125 3.875 19 C -0.342 4.342 20 H 0.042 0.958 21 C -0.056 4.056 22 N -0.933 5.933 23 Si 1.090 2.910 24 H -0.277 1.277 25 H -0.270 1.270 26 H -0.299 1.299 27 C -0.107 4.107 28 C 0.112 3.888 29 C -0.093 4.093 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.041 0.959 46 H -0.008 1.008 47 H 0.053 0.947 48 H 0.036 0.964 49 H 0.253 0.747 50 H 0.029 0.971 51 H 0.078 0.922 52 H 0.083 0.917 53 H 0.095 0.905 54 H 0.065 0.935 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.439 8.071 9.687 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C 0.036 3.964 4 H 0.099 0.901 5 C -0.176 4.176 6 C -0.145 4.145 7 C -0.145 4.145 8 C -0.116 4.116 9 H 0.123 0.877 10 C 0.305 3.695 11 O -0.466 6.466 12 N -0.340 5.340 13 C -0.006 4.006 14 C -0.158 4.158 15 C -0.106 4.106 16 C 0.021 3.979 17 N -0.340 5.340 18 C -0.020 4.020 19 C -0.472 4.472 20 H 0.059 0.941 21 C -0.255 4.255 22 N -0.574 5.574 23 Si 0.916 3.084 24 H -0.203 1.203 25 H -0.195 1.195 26 H -0.226 1.226 27 C -0.146 4.146 28 C -0.010 4.010 29 C -0.131 4.131 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.010 0.990 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.063 0.937 50 H 0.048 0.952 51 H 0.097 0.903 52 H 0.101 0.899 53 H 0.113 0.887 54 H 0.083 0.917 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.415 9.275 8.644 22.358 hybrid contribution 1.005 -1.014 1.013 1.751 sum -17.410 8.261 9.657 21.555 Atomic orbital electron populations 1.22928 0.80062 1.03460 1.00652 1.87913 1.20832 1.28040 1.95135 1.22121 0.93651 0.85004 0.95665 0.90079 1.22037 1.00481 0.99428 0.95621 1.21374 0.93586 1.00798 0.98748 1.21458 0.98975 1.01210 0.92896 1.21255 0.91385 1.02996 0.95922 0.87736 1.21222 0.87098 0.81865 0.79325 1.90608 1.72269 1.34720 1.48964 1.48304 1.24768 1.12387 1.48537 1.21581 0.83276 1.02200 0.93496 1.21848 0.98470 0.96790 0.98711 1.21469 0.96372 0.95627 0.97134 1.20908 0.94054 0.87554 0.95387 1.44063 1.67724 1.00731 1.21528 1.21112 0.96511 0.89364 0.95021 1.19882 1.15322 1.20770 0.91205 0.94057 1.26859 0.99823 0.99210 0.99598 1.70864 1.01904 1.47460 1.37126 0.83205 0.74011 0.77184 0.74027 1.20309 1.19479 1.22612 1.21706 0.94902 1.01073 0.96878 1.21943 0.97351 0.86812 0.94892 1.21462 0.93484 0.99541 0.98594 0.89136 0.93284 0.93203 0.90370 0.90232 0.91078 0.91280 0.92120 0.92839 0.89749 0.90189 0.89753 0.94125 0.91482 0.95162 0.94039 0.99030 0.92806 0.94498 0.93710 0.95221 0.90309 0.89854 0.88701 0.91657 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 113.37 1.23 1.53 16 2 O -0.40 -7.39 9.00 -148.98 -1.34 -8.73 16 3 C 0.09 1.57 2.92 30.60 0.09 1.65 16 4 H 0.08 1.06 7.79 -2.39 -0.02 1.04 16 5 C -0.14 -2.17 5.63 30.60 0.17 -2.00 16 6 C -0.11 -2.12 5.78 30.59 0.18 -1.94 16 7 C -0.11 -2.65 5.07 30.59 0.16 -2.50 16 8 C -0.09 -2.36 1.56 -11.54 -0.02 -2.38 16 9 H 0.10 2.52 5.81 -2.38 -0.01 2.51 16 10 C 0.52 16.00 6.71 87.66 0.59 16.59 16 11 O -0.58 -21.53 15.65 -3.02 -0.05 -21.58 16 12 N -0.61 -18.26 2.97 -818.90 -2.43 -20.70 16 13 C 0.12 3.37 6.44 86.36 0.56 3.93 16 14 C -0.12 -3.81 5.36 30.67 0.16 -3.65 16 15 C -0.09 -3.08 2.36 -10.77 -0.03 -3.10 16 16 C 0.15 6.56 4.34 86.38 0.37 6.93 16 17 N -0.62 -29.64 2.48 -726.92 -1.80 -31.44 16 18 C 0.12 5.14 10.70 127.77 1.37 6.50 16 19 C -0.34 -18.17 7.30 84.03 0.61 -17.56 16 20 H 0.04 2.25 7.96 -2.91 -0.02 2.22 16 21 C -0.06 -3.10 4.82 84.86 0.41 -2.69 16 22 N -0.93 -55.78 12.25 21.65 0.27 -55.52 16 23 Si 1.09 49.57 29.99 68.60 2.06 51.63 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 27 C -0.11 -3.96 4.96 30.67 0.15 -3.81 16 28 C 0.11 3.21 6.15 86.37 0.53 3.75 16 29 C -0.09 -2.00 4.58 30.59 0.14 -1.86 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 0.49 8.08 -2.39 -0.02 0.47 16 32 H 0.05 0.50 7.87 -2.38 -0.02 0.48 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.02 7.87 -2.39 -0.02 1.00 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.43 7.68 -2.39 -0.02 1.41 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.51 7.91 -2.39 -0.02 1.49 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.08 2.44 7.00 -2.39 -0.02 2.42 16 41 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.03 1.28 8.07 -2.38 -0.02 1.26 16 45 H 0.04 2.19 5.54 -2.39 -0.01 2.18 16 46 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 47 H 0.05 1.88 8.05 -2.39 -0.02 1.86 16 48 H 0.04 1.46 8.07 -2.39 -0.02 1.44 16 49 H 0.25 15.56 7.27 -92.70 -0.67 14.88 16 50 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.08 3.26 6.26 -2.39 -0.01 3.24 16 52 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 53 H 0.09 2.50 5.32 -2.39 -0.01 2.48 16 54 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 55 H 0.08 1.82 7.85 -2.39 -0.02 1.80 16 Total: -1.00 -66.69 411.22 4.30 -62.38 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.93 Total: 24.55 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 6.67 Total: -0.60 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -3.97 Total: -107.66 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.39 Total: -30.30 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 2.06 Total: 51.63 kcal Total: -66.69 4.30 -62.38 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732088489.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.669 kcal (2) G-P(sol) polarization free energy of solvation -66.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds