Wall clock time and date at job start Tue Mar 31 2020 22:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00273 * 2 1 4 4 H 1.08994 * 109.46909 * 329.99575 * 3 2 1 5 5 C 1.52998 * 109.47078 * 90.00066 * 3 2 1 6 6 C 1.52999 * 109.47543 * 59.99450 * 5 3 2 7 7 C 1.53001 * 109.46715 * 60.00128 * 6 5 3 8 8 C 1.52994 * 109.47506 * 300.00077 * 7 6 5 9 9 H 1.09004 * 109.47099 * 300.00146 * 8 7 6 10 10 C 1.53001 * 109.47506 * 179.97438 * 8 7 6 11 11 C 1.50693 * 109.47156 * 66.99167 * 10 8 7 12 12 O 1.21287 * 119.99792 * 5.84549 * 11 10 8 13 13 N 1.34780 * 120.00391 * 185.84227 * 11 10 8 14 14 C 1.46496 * 120.00221 * 184.92422 * 13 11 10 15 15 C 1.53000 * 110.01797 * 297.64556 * 14 13 11 16 16 N 1.46497 * 109.47020 * 302.04889 * 15 14 13 17 17 C 1.36942 * 119.99586 * 185.07426 * 16 15 14 18 18 H 1.08001 * 120.00229 * 354.54601 * 17 16 15 19 19 C 1.38815 * 119.99504 * 174.55121 * 17 16 15 20 20 N 1.31616 * 119.99514 * 184.24381 * 19 17 16 21 21 Si 1.86794 * 120.00207 * 4.24622 * 19 17 16 22 22 H 1.48494 * 109.47503 * 93.83265 * 21 19 17 23 23 H 1.48504 * 109.47079 * 213.83410 * 21 19 17 24 24 H 1.48500 * 109.47204 * 333.82861 * 21 19 17 25 25 C 1.54267 * 110.03121 * 59.03733 * 14 13 11 26 26 C 1.54966 * 104.15958 * 95.75196 * 25 14 13 27 27 C 1.54882 * 102.77671 * 37.88949 * 26 25 14 28 28 C 1.53869 * 110.03290 * 176.25199 * 14 13 11 29 29 C 1.53000 * 109.47321 * 59.99844 * 8 7 6 30 30 H 1.08998 * 109.47507 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46941 * 300.00368 * 1 2 3 32 32 H 1.09005 * 109.46859 * 59.99798 * 1 2 3 33 33 H 1.08995 * 109.47235 * 180.02562 * 5 3 2 34 34 H 1.09003 * 109.46956 * 299.99577 * 5 3 2 35 35 H 1.08997 * 109.47282 * 180.02562 * 6 5 3 36 36 H 1.08995 * 109.47348 * 300.00535 * 6 5 3 37 37 H 1.09004 * 109.47174 * 179.97438 * 7 6 5 38 38 H 1.09004 * 109.47061 * 60.00246 * 7 6 5 39 39 H 1.08993 * 109.47127 * 306.98941 * 10 8 7 40 40 H 1.09007 * 109.47102 * 186.98745 * 10 8 7 41 41 H 0.96997 * 119.99458 * 4.92905 * 13 11 10 42 42 H 1.09007 * 109.47005 * 62.05050 * 15 14 13 43 43 H 1.08999 * 109.47128 * 182.04531 * 15 14 13 44 44 H 0.96993 * 120.00518 * 5.06973 * 16 15 14 45 45 H 0.97001 * 120.00182 * 180.02562 * 20 19 17 46 46 H 1.09002 * 110.48825 * 214.40025 * 25 14 13 47 47 H 1.09004 * 110.48730 * 337.04074 * 25 14 13 48 48 H 1.08997 * 110.71902 * 279.57079 * 26 25 14 49 49 H 1.09007 * 110.76249 * 156.22099 * 26 25 14 50 50 H 1.09004 * 110.48967 * 203.40612 * 27 26 25 51 51 H 1.09001 * 110.60449 * 80.81860 * 27 26 25 52 52 H 1.09000 * 110.03383 * 359.95757 * 28 14 13 53 53 H 1.08997 * 110.03298 * 121.33512 * 28 14 13 54 54 H 1.09004 * 109.46788 * 60.00111 * 29 8 7 55 55 H 1.08997 * 109.47407 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5139 5 6 2.2178 1.7713 1.4425 6 6 3.1514 0.7972 2.1638 7 6 4.5001 0.7549 1.4426 8 6 4.2928 0.2890 0.0002 9 1 3.8493 -0.7067 0.0001 10 6 5.6414 0.2473 -0.7212 11 6 6.5006 -0.8337 -0.1179 12 8 6.0404 -1.5741 0.7254 13 7 7.7804 -0.9779 -0.5154 14 6 8.5831 -2.0942 -0.0098 15 6 8.7345 -1.9849 1.5088 16 7 9.3549 -0.7014 1.8464 17 6 9.6869 -0.4222 3.1453 18 1 9.4123 -1.1088 3.9325 19 6 10.3762 0.7435 3.4502 20 7 10.7685 0.9720 4.6856 21 14 10.7468 1.9878 2.1073 22 1 9.6782 3.0185 2.0787 23 1 12.0538 2.6374 2.3814 24 1 10.8034 1.2968 0.7941 25 6 7.9155 -3.4350 -0.3791 26 6 8.6306 -3.8678 -1.6840 27 6 10.0957 -3.4333 -1.4319 28 6 9.9686 -2.0928 -0.6791 29 6 3.3591 1.2630 -0.7212 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.6607 2.7672 1.4425 34 1 1.2569 1.8015 1.9563 35 1 3.2988 1.1289 3.1916 36 1 2.7081 -0.1985 2.1638 37 1 5.1655 0.0613 1.9568 38 1 4.9435 1.7507 1.4427 39 1 6.1406 1.2103 -0.6142 40 1 5.4814 0.0365 -1.7787 41 1 8.1698 -0.3425 -1.1362 42 1 7.7523 -2.0482 1.9773 43 1 9.3628 -2.7986 1.8708 44 1 9.5306 -0.0495 1.1501 45 1 11.2498 1.7867 4.8988 46 1 8.0785 -4.1718 0.4075 47 1 6.8492 -3.2943 -0.5562 48 1 8.2145 -3.3432 -2.5440 49 1 8.5659 -4.9474 -1.8203 50 1 10.6197 -3.2917 -2.3772 51 1 10.6135 -4.1689 -0.8164 52 1 10.0435 -1.2620 -1.3807 53 1 10.7488 -2.0133 0.0778 54 1 3.8025 2.2588 -0.7212 55 1 3.2110 0.9309 -1.7487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732230759.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:36 Heat of formation + Delta-G solvation = -118.362773 kcal Electronic energy + Delta-G solvation = -31832.001400 eV Core-core repulsion = 27867.051119 eV Total energy + Delta-G solvation = -3964.950281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.51977 -40.33766 -38.86006 -36.99460 -36.30246 -34.48694 -33.52704 -33.09889 -31.16640 -30.09462 -29.67897 -27.95480 -27.26631 -26.19073 -23.89403 -23.47933 -23.02707 -21.82300 -20.88145 -20.48795 -20.47306 -19.64007 -18.00305 -17.30023 -16.89231 -16.71502 -16.61501 -16.41150 -16.22460 -15.90540 -15.83832 -15.59538 -14.98310 -14.77729 -14.62325 -14.38878 -14.23982 -14.07590 -13.72494 -13.63365 -13.44649 -13.35271 -13.03459 -12.88285 -12.72397 -12.64047 -12.53740 -12.27180 -12.14328 -12.09212 -11.97009 -11.91037 -11.86850 -11.80596 -11.67784 -11.44661 -11.39843 -11.20038 -11.11841 -10.96906 -10.36632 -10.32830 -9.85029 -9.25169 -8.03665 -5.36594 1.31201 1.39054 1.46587 1.87821 2.35741 2.46949 2.97052 3.25294 3.47282 3.68148 3.72884 3.76104 3.80783 3.90483 4.02818 4.05534 4.21166 4.28310 4.38275 4.41705 4.47746 4.50553 4.52696 4.57993 4.58211 4.62842 4.68688 4.70904 4.77872 4.81276 4.84094 4.85861 4.87595 4.90754 4.95146 4.98286 5.07267 5.08460 5.12161 5.22735 5.25305 5.29426 5.32196 5.36292 5.39682 5.48299 5.49714 5.65184 5.72720 5.83057 6.19342 6.40821 6.76694 7.07024 7.51601 7.81433 8.07529 9.18611 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009700 B = 0.003895 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.962125 B = 7187.401114 C = 9130.098724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.088 3.912 4 H 0.083 0.917 5 C -0.136 4.136 6 C -0.109 4.109 7 C -0.116 4.116 8 C -0.056 4.056 9 H 0.059 0.941 10 C -0.133 4.133 11 C 0.507 3.493 12 O -0.567 6.567 13 N -0.713 5.713 14 C 0.173 3.827 15 C 0.151 3.849 16 N -0.742 5.742 17 C -0.236 4.236 18 H 0.040 0.960 19 C -0.066 4.066 20 N -0.986 5.986 21 Si 0.962 3.038 22 H -0.279 1.279 23 H -0.293 1.293 24 H -0.241 1.241 25 C -0.119 4.119 26 C -0.110 4.110 27 C -0.115 4.115 28 C -0.125 4.125 29 C -0.106 4.106 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.034 0.966 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.409 0.591 42 H 0.016 0.984 43 H 0.018 0.982 44 H 0.368 0.632 45 H 0.258 0.742 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.090 0.910 51 H 0.064 0.936 52 H 0.087 0.913 53 H 0.059 0.941 54 H 0.092 0.908 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.121 0.092 -22.333 27.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C 0.030 3.970 4 H 0.101 0.899 5 C -0.174 4.174 6 C -0.147 4.147 7 C -0.153 4.153 8 C -0.075 4.075 9 H 0.078 0.922 10 C -0.173 4.173 11 C 0.295 3.705 12 O -0.445 6.445 13 N -0.366 5.366 14 C 0.086 3.914 15 C 0.024 3.976 16 N -0.388 5.388 17 C -0.367 4.367 18 H 0.058 0.942 19 C -0.257 4.257 20 N -0.637 5.637 21 Si 0.788 3.212 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.165 1.165 25 C -0.158 4.158 26 C -0.148 4.148 27 C -0.152 4.152 28 C -0.163 4.163 29 C -0.143 4.143 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.121 0.879 40 H 0.142 0.858 41 H 0.245 0.755 42 H 0.034 0.966 43 H 0.036 0.964 44 H 0.202 0.798 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.108 0.892 51 H 0.082 0.918 52 H 0.105 0.895 53 H 0.078 0.922 54 H 0.111 0.889 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.317 -0.677 -21.530 27.023 hybrid contribution 0.443 1.081 0.642 1.333 sum -15.874 0.405 -20.888 26.239 Atomic orbital electron populations 1.22904 0.80462 1.03173 1.00582 1.87964 1.20543 1.28690 1.95087 1.22220 0.95147 0.84546 0.95062 0.89936 1.22019 0.99563 0.99240 0.96529 1.21310 0.95441 0.99669 0.98247 1.21571 0.97016 1.00136 0.96599 1.20667 0.93562 0.99812 0.93502 0.92216 1.21836 0.95324 0.97877 1.02237 1.21232 0.82436 0.85503 0.81344 1.90669 1.73890 1.47372 1.32616 1.46112 1.12008 1.29904 1.48578 1.21103 0.91485 0.87394 0.91379 1.21140 0.94957 0.86995 0.94549 1.42422 1.74839 1.16852 1.04699 1.18970 1.28204 1.04347 0.85140 0.94198 1.25592 1.00316 1.00855 0.98968 1.69924 1.45457 1.27936 1.20379 0.85303 0.77082 0.78870 0.79954 1.20545 1.21986 1.16505 1.22581 0.99772 0.94764 0.98638 1.22470 0.94637 1.01502 0.96169 1.22328 0.97135 0.95259 1.00512 1.22447 0.94164 1.00173 0.99518 1.21719 0.93094 1.00250 0.99233 0.89577 0.93864 0.92658 0.90024 0.91497 0.93403 0.93303 0.94734 0.92470 0.87865 0.85816 0.75458 0.96626 0.96394 0.79811 0.93332 0.92223 0.91923 0.90297 0.90254 0.89177 0.91769 0.89470 0.92227 0.88914 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.82 113.37 1.23 1.60 16 2 O -0.40 -8.76 9.00 -148.98 -1.34 -10.10 16 3 C 0.09 1.56 2.92 30.60 0.09 1.65 16 4 H 0.08 1.06 7.79 -2.39 -0.02 1.04 16 5 C -0.14 -2.70 5.63 30.59 0.17 -2.53 16 6 C -0.11 -3.01 5.78 30.59 0.18 -2.84 16 7 C -0.12 -3.52 4.97 30.59 0.15 -3.37 16 8 C -0.06 -1.39 1.68 -10.80 -0.02 -1.41 16 9 H 0.06 1.83 7.34 -2.39 -0.02 1.82 16 10 C -0.13 -2.88 5.16 29.85 0.15 -2.73 16 11 C 0.51 15.55 6.58 87.65 0.58 16.12 16 12 O -0.57 -22.70 11.13 -3.05 -0.03 -22.74 16 13 N -0.71 -19.61 4.68 -419.66 -1.96 -21.57 16 14 C 0.17 5.41 0.56 4.33 0.00 5.41 16 15 C 0.15 6.63 4.64 86.38 0.40 7.03 16 16 N -0.74 -36.72 4.89 -343.44 -1.68 -38.40 16 17 C -0.24 -14.40 10.47 84.03 0.88 -13.52 16 18 H 0.04 2.75 8.06 -2.91 -0.02 2.73 16 19 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 20 N -0.99 -65.57 13.97 21.65 0.30 -65.27 16 21 Si 0.96 45.70 27.89 68.60 1.91 47.61 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 24 H -0.24 -9.84 6.30 99.48 0.63 -9.21 16 25 C -0.12 -3.35 5.60 31.70 0.18 -3.17 16 26 C -0.11 -2.18 6.91 31.91 0.22 -1.96 16 27 C -0.11 -2.31 6.83 31.67 0.22 -2.09 16 28 C -0.12 -3.28 5.87 31.32 0.18 -3.09 16 29 C -0.11 -1.80 4.94 30.60 0.15 -1.65 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.04 0.59 7.87 -2.39 -0.02 0.57 16 32 H 0.05 0.61 8.09 -2.38 -0.02 0.59 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.21 7.87 -2.39 -0.02 1.19 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.51 7.68 -2.39 -0.02 1.49 16 37 H 0.03 1.37 6.35 -2.39 -0.02 1.36 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.41 8.47 8.08 -92.71 -0.75 7.73 16 42 H 0.02 0.80 6.28 -2.38 -0.01 0.79 16 43 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.37 16.63 4.96 -92.71 -0.46 16.17 16 45 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 46 H 0.06 1.82 7.85 -2.39 -0.02 1.81 16 47 H 0.06 1.94 6.41 -2.39 -0.02 1.92 16 48 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 50 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 51 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 52 H 0.09 1.87 7.45 -2.39 -0.02 1.85 16 53 H 0.06 1.92 7.49 -2.39 -0.02 1.90 16 54 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 55 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -81.08 410.63 2.00 -79.08 By element: Atomic # 1 Polarization: 41.96 SS G_CDS: -0.43 Total: 41.53 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 5.23 Total: -10.15 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -3.34 Total: -125.24 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.37 Total: -32.83 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.91 Total: 47.61 kcal Total: -81.08 2.00 -79.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732230759.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.282 kcal (2) G-P(sol) polarization free energy of solvation -81.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds