Wall clock time and date at job start Tue Mar 31 2020 22:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99881 * 2 1 4 4 H 1.09000 * 109.47169 * 29.99718 * 3 2 1 5 5 C 1.53000 * 109.47091 * 269.99607 * 3 2 1 6 6 C 1.52993 * 109.47161 * 299.99984 * 5 3 2 7 7 C 1.53000 * 109.47255 * 300.00120 * 6 5 3 8 8 C 1.53000 * 109.47134 * 59.99864 * 7 6 5 9 9 H 1.09005 * 109.47064 * 59.99913 * 8 7 6 10 10 C 1.53000 * 109.47134 * 180.02562 * 8 7 6 11 11 C 1.50695 * 109.47004 * 295.00261 * 10 8 7 12 12 O 1.21283 * 120.00171 * 359.97438 * 11 10 8 13 13 N 1.34776 * 119.99871 * 179.97438 * 11 10 8 14 14 C 1.46509 * 119.99955 * 174.81244 * 13 11 10 15 15 C 1.52997 * 110.43377 * 302.03496 * 14 13 11 16 16 N 1.46498 * 109.47415 * 307.73107 * 15 14 13 17 17 C 1.36935 * 120.00348 * 174.96932 * 16 15 14 18 18 H 1.08005 * 119.99505 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00475 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99943 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00368 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47389 * 89.99585 * 21 19 17 23 23 H 1.48494 * 109.47492 * 209.99898 * 21 19 17 24 24 H 1.48506 * 109.47170 * 330.00117 * 21 19 17 25 25 C 1.54890 * 110.48227 * 179.35540 * 14 13 11 26 26 C 1.54900 * 102.74801 * 279.26071 * 25 14 13 27 27 C 1.54268 * 104.19431 * 322.06125 * 26 25 14 28 28 C 1.53878 * 106.59753 * 23.60856 * 27 26 25 29 29 C 1.52993 * 109.47161 * 300.00194 * 8 7 6 30 30 H 1.09002 * 109.47029 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47624 * 300.00240 * 1 2 3 32 32 H 1.09003 * 109.46875 * 60.00318 * 1 2 3 33 33 H 1.09003 * 109.46938 * 60.00486 * 5 3 2 34 34 H 1.09001 * 109.47107 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47143 * 180.02562 * 6 5 3 36 36 H 1.09005 * 109.46902 * 60.00182 * 6 5 3 37 37 H 1.09001 * 109.46796 * 300.00074 * 7 6 5 38 38 H 1.09000 * 109.47147 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.46773 * 55.00167 * 10 8 7 40 40 H 1.08992 * 109.47176 * 175.00181 * 10 8 7 41 41 H 0.96993 * 120.00297 * 354.81402 * 13 11 10 42 42 H 1.09003 * 109.47233 * 67.73203 * 15 14 13 43 43 H 1.09003 * 109.46933 * 187.73375 * 15 14 13 44 44 H 0.96997 * 119.99771 * 354.97327 * 16 15 14 45 45 H 0.96998 * 120.00225 * 180.02562 * 20 19 17 46 46 H 1.08996 * 110.76086 * 37.57782 * 25 14 13 47 47 H 1.09000 * 110.75510 * 160.95515 * 25 14 13 48 48 H 1.08999 * 110.48551 * 203.38162 * 26 25 14 49 49 H 1.08996 * 110.48242 * 80.73860 * 26 25 14 50 50 H 1.08997 * 110.03527 * 264.32238 * 27 26 25 51 51 H 1.09000 * 110.02760 * 142.88810 * 27 26 25 52 52 H 1.08996 * 110.03336 * 240.70790 * 28 27 26 53 53 H 1.09002 * 110.02907 * 119.28744 * 28 27 26 54 54 H 1.09001 * 109.47590 * 180.02562 * 29 8 7 55 55 H 1.09001 * 109.47279 * 300.00101 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 3.1516 0.7974 -2.1636 7 6 4.5002 0.7552 -1.4423 8 6 4.2927 0.2893 0.0002 9 1 3.8493 -0.7065 0.0002 10 6 5.6413 0.2477 0.7217 11 6 6.5186 -0.8001 0.0866 12 8 6.1058 -1.4499 -0.8505 13 7 7.7621 -1.0150 0.5600 14 6 8.5731 -2.1085 0.0188 15 6 7.8510 -3.4461 0.1935 16 7 7.4484 -3.6046 1.5931 17 6 6.6929 -4.6826 1.9703 18 1 6.3943 -5.4162 1.2361 19 6 6.3110 -4.8326 3.2964 20 7 6.6745 -3.9383 4.1911 21 14 5.2810 -6.3035 3.8111 22 1 6.1761 -7.4223 4.2015 23 1 4.4249 -5.9289 4.9651 24 1 4.4233 -6.7289 2.6759 25 6 9.9611 -2.1449 0.7052 26 6 10.7454 -1.0440 -0.0513 27 6 10.2744 -1.1812 -1.5139 28 6 8.8932 -1.8580 -1.4692 29 6 3.3589 1.2633 0.7213 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.2569 1.8014 -1.9564 34 1 2.6607 2.7673 -1.4425 35 1 3.2998 1.1295 -3.1912 36 1 2.7082 -0.1985 -2.1636 37 1 4.9435 1.7510 -1.4423 38 1 5.1654 0.0609 -1.9558 39 1 6.1246 1.2216 0.6448 40 1 5.4840 0.0020 1.7719 41 1 8.1200 -0.4457 1.2590 42 1 6.9668 -3.4676 -0.4436 43 1 8.5204 -4.2595 -0.0864 44 1 7.7169 -2.9459 2.2525 45 1 6.4079 -4.0433 5.1178 46 1 9.8752 -1.8998 1.7638 47 1 10.4336 -3.1178 0.5698 48 1 11.8184 -1.2211 0.0222 49 1 10.4928 -0.0585 0.3400 50 1 10.9751 -1.7991 -2.0754 51 1 10.1929 -0.1963 -1.9738 52 1 8.9235 -2.8044 -2.0091 53 1 8.1415 -1.2016 -1.9076 54 1 3.2114 0.9317 1.7491 55 1 3.8022 2.2591 0.7213 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732230760.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:41 Heat of formation + Delta-G solvation = -121.932132 kcal Electronic energy + Delta-G solvation = -31859.353736 eV Core-core repulsion = 27894.248677 eV Total energy + Delta-G solvation = -3965.105060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.43626 -40.30657 -38.79460 -36.97039 -36.18791 -34.32290 -33.38570 -32.81852 -31.13929 -29.91946 -29.61008 -27.90061 -27.30074 -26.24318 -23.99672 -23.44189 -23.02524 -21.51284 -21.16038 -20.48529 -20.25048 -19.12578 -17.94321 -17.28845 -17.02872 -16.64722 -16.47538 -16.41179 -16.13085 -15.81538 -15.72468 -15.59478 -15.07577 -14.76033 -14.56560 -14.34966 -14.23450 -14.01573 -13.71991 -13.41814 -13.29408 -13.19962 -12.95982 -12.82430 -12.72423 -12.66328 -12.35904 -12.28634 -12.19019 -12.12344 -12.05735 -11.90526 -11.86241 -11.74365 -11.62396 -11.40632 -11.27373 -11.16513 -11.09105 -10.94850 -10.32710 -10.26775 -9.74350 -8.94527 -7.95655 -5.21166 1.42342 1.43981 1.52435 1.92040 2.43832 2.55059 2.97324 3.36956 3.55247 3.74023 3.75787 3.79914 3.90698 3.97102 4.08387 4.19949 4.22951 4.33179 4.41043 4.44021 4.48660 4.53433 4.57373 4.58282 4.61764 4.68063 4.72160 4.73461 4.75293 4.82549 4.85477 4.89468 4.91981 4.94536 4.97562 4.99121 5.08985 5.10663 5.15194 5.19161 5.31299 5.34686 5.36776 5.38320 5.41857 5.45503 5.53846 5.57250 5.69968 5.88225 6.27533 6.41825 6.83071 7.34859 7.57095 8.09468 8.39199 9.27256 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007694 B = 0.004421 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3638.421022 B = 6331.649859 C = 9165.251859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.083 3.917 4 H 0.079 0.921 5 C -0.132 4.132 6 C -0.110 4.110 7 C -0.108 4.108 8 C -0.059 4.059 9 H 0.034 0.966 10 C -0.132 4.132 11 C 0.514 3.486 12 O -0.568 6.568 13 N -0.704 5.704 14 C 0.173 3.827 15 C 0.148 3.852 16 N -0.726 5.726 17 C -0.244 4.244 18 H 0.058 0.942 19 C -0.066 4.066 20 N -0.961 5.961 21 Si 0.965 3.035 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.281 1.281 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.114 4.114 28 C -0.118 4.118 29 C -0.108 4.108 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.123 0.877 40 H 0.085 0.915 41 H 0.406 0.594 42 H 0.012 0.988 43 H 0.014 0.986 44 H 0.378 0.622 45 H 0.251 0.749 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.073 0.927 52 H 0.058 0.942 53 H 0.060 0.940 54 H 0.058 0.942 55 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.195 18.835 -10.215 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.026 3.974 4 H 0.097 0.903 5 C -0.170 4.170 6 C -0.147 4.147 7 C -0.146 4.146 8 C -0.078 4.078 9 H 0.053 0.947 10 C -0.171 4.171 11 C 0.303 3.697 12 O -0.447 6.447 13 N -0.356 5.356 14 C 0.086 3.914 15 C 0.020 3.980 16 N -0.369 5.369 17 C -0.376 4.376 18 H 0.076 0.924 19 C -0.258 4.258 20 N -0.611 5.611 21 Si 0.794 3.206 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.155 4.155 26 C -0.149 4.149 27 C -0.151 4.151 28 C -0.157 4.157 29 C -0.146 4.146 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.141 0.859 40 H 0.103 0.897 41 H 0.241 0.759 42 H 0.030 0.970 43 H 0.032 0.968 44 H 0.211 0.789 45 H 0.060 0.940 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.091 0.909 51 H 0.091 0.909 52 H 0.076 0.924 53 H 0.078 0.922 54 H 0.077 0.923 55 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.472 18.037 -10.912 21.133 hybrid contribution -0.847 -1.022 1.053 1.695 sum -2.320 17.015 -9.859 19.801 Atomic orbital electron populations 1.22885 0.80495 1.02933 1.00713 1.88010 1.20614 1.29277 1.95163 1.22300 0.94724 0.84220 0.96184 0.90324 1.22000 0.99950 0.99736 0.95298 1.21341 0.95501 0.99034 0.98870 1.21579 0.97347 1.01028 0.94621 1.20643 0.93062 0.98739 0.95333 0.94707 1.21762 0.95743 0.99094 1.00542 1.20994 0.81792 0.84157 0.82802 1.90605 1.73725 1.50396 1.30013 1.45791 1.15263 1.33149 1.41385 1.21210 0.90573 0.85290 0.94301 1.21082 0.96040 0.94729 0.86116 1.42212 1.62743 1.27482 1.04451 1.19493 1.24186 1.01048 0.92841 0.92400 1.25358 1.03051 1.01430 0.95986 1.69767 1.52179 1.37434 1.01769 0.85273 0.78486 0.79565 0.77258 1.20969 1.21661 1.20704 1.22687 0.92792 1.00605 0.99437 1.22349 1.00091 0.98177 0.94292 1.22095 0.94813 1.00805 0.97396 1.22357 0.98175 1.00814 0.94363 1.21726 0.93802 1.00604 0.98448 0.90209 0.93028 0.92961 0.91499 0.88911 0.91539 0.94536 0.90606 0.92913 0.85875 0.89699 0.75854 0.97018 0.96808 0.78907 0.93970 0.91466 0.90862 0.89827 0.90502 0.90859 0.90850 0.92351 0.92152 0.92338 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.82 113.37 1.23 1.76 16 2 O -0.41 -11.54 9.00 -148.98 -1.34 -12.88 16 3 C 0.08 1.77 2.92 30.59 0.09 1.86 16 4 H 0.08 1.31 7.79 -2.39 -0.02 1.29 16 5 C -0.13 -2.45 5.63 30.59 0.17 -2.28 16 6 C -0.11 -2.67 5.78 30.59 0.18 -2.49 16 7 C -0.11 -2.84 4.95 30.59 0.15 -2.69 16 8 C -0.06 -1.71 1.69 -10.80 -0.02 -1.73 16 9 H 0.03 1.39 7.50 -2.38 -0.02 1.37 16 10 C -0.13 -3.68 5.18 29.85 0.15 -3.53 16 11 C 0.51 18.19 6.79 87.66 0.59 18.79 16 12 O -0.57 -24.43 10.91 -3.04 -0.03 -24.46 16 13 N -0.70 -22.47 4.54 -418.07 -1.90 -24.37 16 14 C 0.17 5.87 0.40 4.67 0.00 5.87 16 15 C 0.15 6.77 4.74 86.38 0.41 7.18 16 16 N -0.73 -38.82 5.31 -343.45 -1.82 -40.64 16 17 C -0.24 -14.62 9.99 84.03 0.84 -13.78 16 18 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 19 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 20 N -0.96 -59.12 13.06 21.65 0.28 -58.83 16 21 Si 0.96 48.60 29.55 68.60 2.03 50.62 16 22 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 24 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 25 C -0.12 -3.36 5.66 31.89 0.18 -3.18 16 26 C -0.11 -2.28 6.79 31.67 0.22 -2.06 16 27 C -0.11 -2.43 6.80 31.32 0.21 -2.22 16 28 C -0.12 -3.52 5.67 31.32 0.18 -3.34 16 29 C -0.11 -2.42 4.94 30.59 0.15 -2.27 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16 32 H 0.05 0.87 7.87 -2.39 -0.02 0.85 16 33 H 0.07 1.13 7.87 -2.39 -0.02 1.11 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 1.11 7.68 -2.38 -0.02 1.09 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.73 5.95 -2.39 -0.01 1.71 16 39 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.41 10.75 8.49 -92.71 -0.79 9.96 16 42 H 0.01 0.62 6.54 -2.39 -0.02 0.60 16 43 H 0.01 0.65 8.02 -2.39 -0.02 0.63 16 44 H 0.38 20.48 7.27 -92.71 -0.67 19.81 16 45 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 46 H 0.07 2.03 8.09 -2.39 -0.02 2.01 16 47 H 0.07 2.22 7.97 -2.39 -0.02 2.20 16 48 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 52 H 0.06 1.83 7.84 -2.39 -0.02 1.81 16 53 H 0.06 1.97 6.55 -2.39 -0.02 1.96 16 54 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 55 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -75.87 415.30 1.82 -74.05 By element: Atomic # 1 Polarization: 44.68 SS G_CDS: -0.60 Total: 44.08 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 5.20 Total: -7.57 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -3.44 Total: -123.85 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -1.37 Total: -37.34 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.62 kcal Total: -75.87 1.82 -74.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732230760.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.879 kcal (2) G-P(sol) polarization free energy of solvation -75.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds