Wall clock time and date at job start Tue Mar 31 2020 22:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99738 * 2 1 4 4 H 1.08999 * 109.47193 * 30.00076 * 3 2 1 5 5 C 1.52998 * 109.47154 * 269.99642 * 3 2 1 6 6 C 1.52997 * 109.47289 * 179.97438 * 5 3 2 7 7 C 1.53007 * 109.46817 * 60.00323 * 6 5 3 8 8 C 1.52995 * 109.47133 * 300.00210 * 7 6 5 9 9 H 1.08999 * 109.47068 * 299.99830 * 8 7 6 10 10 C 1.53002 * 109.47375 * 179.97438 * 8 7 6 11 11 C 1.50705 * 109.46926 * 64.99717 * 10 8 7 12 12 O 1.21285 * 119.99765 * 0.02562 * 11 10 8 13 13 N 1.34773 * 119.99951 * 180.02562 * 11 10 8 14 14 C 1.46497 * 120.00074 * 174.55556 * 13 11 10 15 15 C 1.52998 * 110.43611 * 303.04580 * 14 13 11 16 16 N 1.46498 * 109.46990 * 307.77035 * 15 14 13 17 17 C 1.36942 * 120.00155 * 174.95388 * 16 15 14 18 18 H 1.07998 * 119.99975 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00043 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00361 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00061 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47077 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47176 * 119.99982 * 21 19 17 24 24 H 1.48501 * 109.47508 * 240.00400 * 21 19 17 25 25 C 1.54884 * 110.48766 * 180.49867 * 14 13 11 26 26 C 1.55238 * 102.59314 * 279.18913 * 25 14 13 27 27 C 1.54263 * 104.22919 * 322.08609 * 26 25 14 28 28 C 1.53876 * 106.60314 * 23.60724 * 27 26 25 29 29 C 1.52995 * 109.46799 * 150.00043 * 3 2 1 30 30 H 1.09004 * 109.47316 * 300.00260 * 1 2 3 31 31 H 1.09005 * 109.47068 * 59.99953 * 1 2 3 32 32 H 1.08997 * 109.47322 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46879 * 60.00317 * 5 3 2 34 34 H 1.08999 * 109.47425 * 300.00293 * 5 3 2 35 35 H 1.08999 * 109.47269 * 300.00564 * 6 5 3 36 36 H 1.08997 * 109.47317 * 180.02562 * 6 5 3 37 37 H 1.09000 * 109.46745 * 59.99594 * 7 6 5 38 38 H 1.08991 * 109.47192 * 179.97438 * 7 6 5 39 39 H 1.08996 * 109.47120 * 184.99663 * 10 8 7 40 40 H 1.08996 * 109.46763 * 305.00349 * 10 8 7 41 41 H 0.97008 * 119.99824 * 354.55837 * 13 11 10 42 42 H 1.08999 * 109.47408 * 67.76994 * 15 14 13 43 43 H 1.08999 * 109.47302 * 187.77176 * 15 14 13 44 44 H 0.96998 * 120.00171 * 354.95826 * 16 15 14 45 45 H 0.96999 * 120.00272 * 180.02562 * 20 19 17 46 46 H 1.09003 * 110.75496 * 37.58250 * 25 14 13 47 47 H 1.09005 * 110.75538 * 160.95209 * 25 14 13 48 48 H 1.08996 * 110.47122 * 203.39365 * 26 25 14 49 49 H 1.09006 * 110.57792 * 80.82860 * 26 25 14 50 50 H 1.08999 * 110.03602 * 264.32272 * 27 26 25 51 51 H 1.09000 * 110.07399 * 142.91738 * 27 26 25 52 52 H 1.09004 * 110.03507 * 240.71769 * 28 27 26 53 53 H 1.09000 * 110.07584 * 119.30618 * 28 27 26 54 54 H 1.09005 * 109.47486 * 299.99888 * 29 3 2 55 55 H 1.08999 * 109.47220 * 60.00050 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 2.8393 3.1694 -1.4425 7 6 4.1880 3.1278 -0.7210 8 6 3.9805 2.6619 0.7214 9 1 3.3149 3.3555 1.2351 10 6 5.3292 2.6196 1.4427 11 6 5.8849 4.0163 1.5509 12 8 5.2632 4.9532 1.0962 13 7 7.0727 4.2242 2.1528 14 6 7.6695 5.5621 2.1533 15 6 7.8412 6.0710 0.7207 16 7 8.5602 5.0693 -0.0704 17 6 8.7413 5.2593 -1.4144 18 1 8.3537 6.1473 -1.8913 19 6 9.4221 4.3099 -2.1641 20 7 9.8932 3.2268 -1.5832 21 14 9.6697 4.5693 -3.9973 22 1 9.0501 5.8564 -4.4032 23 1 11.1230 4.6028 -4.3006 24 1 9.0333 3.4555 -4.7453 25 6 9.0315 5.5479 2.8906 26 6 8.6093 5.6172 4.3828 27 6 7.3998 6.5747 4.3907 28 6 6.8022 6.5397 2.9731 29 6 3.3588 1.2633 0.7212 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.2568 1.8015 -1.9563 34 1 2.8830 1.0775 -1.9563 35 1 2.1737 3.8630 -0.9288 36 1 2.9867 3.5015 -2.4701 37 1 4.8535 2.4341 -1.2347 38 1 4.6311 4.1236 -0.7214 39 1 5.1943 2.2039 2.4412 40 1 6.0229 1.9952 0.8797 41 1 7.5326 3.4878 2.5857 42 1 6.8611 6.2483 0.2781 43 1 8.4089 7.0014 0.7312 44 1 8.9080 4.2714 0.3578 45 1 10.3693 2.5635 -2.1070 46 1 9.5739 4.6256 2.6824 47 1 9.6280 6.4183 2.6169 48 1 9.4195 6.0210 4.9899 49 1 8.3177 4.6312 4.7447 50 1 7.7257 7.5860 4.6336 51 1 6.6599 6.2368 5.1163 52 1 6.8382 7.5341 2.5281 53 1 5.7724 6.1845 3.0099 54 1 3.2111 0.9314 1.7489 55 1 4.0241 0.5694 0.2074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732230761.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:46 Heat of formation + Delta-G solvation = -123.346567 kcal Electronic energy + Delta-G solvation = -31696.376281 eV Core-core repulsion = 27731.209887 eV Total energy + Delta-G solvation = -3965.166394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.43513 -40.24692 -38.82075 -37.30023 -36.16851 -34.31679 -33.45350 -32.83362 -31.06635 -29.90445 -29.60399 -27.89654 -27.27703 -26.23930 -23.98296 -23.36633 -23.03113 -21.53276 -21.22242 -20.72734 -20.26129 -19.10375 -17.93356 -17.46630 -17.12952 -16.56956 -16.46606 -16.31025 -16.05935 -15.88317 -15.65505 -15.58686 -15.06510 -14.84275 -14.69139 -14.37595 -14.26508 -14.03313 -13.84893 -13.68062 -13.31272 -13.16007 -12.96697 -12.85173 -12.71292 -12.52190 -12.35723 -12.30377 -12.14832 -12.06838 -11.95786 -11.91708 -11.89892 -11.74421 -11.61375 -11.47443 -11.37186 -11.28346 -11.25983 -10.96937 -10.40260 -10.28642 -9.75613 -8.92401 -7.94168 -5.19256 1.42999 1.44004 1.53288 1.90570 2.39815 2.55288 2.84070 3.38964 3.56152 3.67759 3.73545 3.75191 3.89506 4.00400 4.11126 4.11741 4.21116 4.23623 4.31951 4.44541 4.49275 4.50615 4.52860 4.55299 4.58815 4.64982 4.65150 4.71290 4.72971 4.80772 4.83403 4.87515 4.88402 4.95546 4.95688 5.03469 5.05070 5.11454 5.15562 5.20324 5.21597 5.24607 5.33088 5.34685 5.38206 5.47553 5.51614 5.53974 5.55022 5.88076 6.28738 6.30965 6.82154 7.36544 7.55312 8.11506 8.40630 9.28717 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008105 B = 0.004058 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3453.923636 B = 6898.879811 C = 9525.878027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.094 3.906 4 H 0.071 0.929 5 C -0.135 4.135 6 C -0.108 4.108 7 C -0.120 4.120 8 C -0.052 4.052 9 H 0.075 0.925 10 C -0.132 4.132 11 C 0.516 3.484 12 O -0.566 6.566 13 N -0.705 5.705 14 C 0.173 3.827 15 C 0.148 3.852 16 N -0.725 5.725 17 C -0.238 4.238 18 H 0.059 0.941 19 C -0.064 4.064 20 N -0.960 5.960 21 Si 0.961 3.039 22 H -0.275 1.275 23 H -0.289 1.289 24 H -0.294 1.294 25 C -0.118 4.118 26 C -0.113 4.113 27 C -0.114 4.114 28 C -0.118 4.118 29 C -0.104 4.104 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.038 0.962 38 H 0.053 0.947 39 H 0.122 0.878 40 H 0.086 0.914 41 H 0.406 0.594 42 H 0.017 0.983 43 H 0.013 0.987 44 H 0.378 0.622 45 H 0.250 0.750 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.072 0.928 52 H 0.059 0.941 53 H 0.060 0.940 54 H 0.085 0.915 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.535 -3.055 13.548 20.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.036 3.964 4 H 0.089 0.911 5 C -0.172 4.172 6 C -0.146 4.146 7 C -0.157 4.157 8 C -0.071 4.071 9 H 0.094 0.906 10 C -0.172 4.172 11 C 0.304 3.696 12 O -0.445 6.445 13 N -0.356 5.356 14 C 0.086 3.914 15 C 0.021 3.979 16 N -0.368 5.368 17 C -0.370 4.370 18 H 0.077 0.923 19 C -0.257 4.257 20 N -0.611 5.611 21 Si 0.791 3.209 22 H -0.200 1.200 23 H -0.216 1.216 24 H -0.221 1.221 25 C -0.156 4.156 26 C -0.150 4.150 27 C -0.152 4.152 28 C -0.157 4.157 29 C -0.142 4.142 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.141 0.859 40 H 0.105 0.895 41 H 0.241 0.759 42 H 0.035 0.965 43 H 0.031 0.969 44 H 0.210 0.790 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.100 0.900 49 H 0.094 0.906 50 H 0.091 0.909 51 H 0.091 0.909 52 H 0.078 0.922 53 H 0.079 0.921 54 H 0.103 0.897 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.881 -2.440 13.058 19.948 hybrid contribution 0.648 -0.163 -1.456 1.602 sum -14.232 -2.603 11.602 18.546 Atomic orbital electron populations 1.22964 0.79875 1.03688 1.00681 1.87880 1.21166 1.28350 1.95179 1.22095 0.94930 0.84192 0.95169 0.91100 1.21990 1.01172 0.96508 0.97567 1.21390 0.96199 0.96735 1.00252 1.21634 0.97169 1.01153 0.95768 1.20685 0.95003 0.96302 0.95110 0.90618 1.21729 0.97934 0.93431 1.04109 1.20904 0.80785 0.91757 0.76135 1.90597 1.60210 1.45573 1.48108 1.45792 1.21293 1.11082 1.57443 1.21218 0.93691 0.83145 0.93337 1.21082 0.94168 0.91490 0.91194 1.42222 1.66265 1.23328 1.05001 1.19502 1.27941 1.03198 0.86390 0.92304 1.25310 1.01886 0.97037 1.01488 1.69771 1.44129 1.11410 1.35788 0.85254 0.77122 0.77123 0.81399 1.20001 1.21632 1.22117 1.22746 0.94446 1.02542 0.95819 1.22405 0.97858 1.00278 0.94459 1.22091 0.97528 1.00384 0.95157 1.22362 0.99154 0.98316 0.95852 1.21585 0.95073 0.96084 1.01461 0.93022 0.93639 0.88525 0.90937 0.92464 0.91404 0.92465 0.94328 0.92861 0.85950 0.89516 0.75860 0.96537 0.96915 0.78953 0.94096 0.91514 0.90861 0.89968 0.90562 0.90897 0.90886 0.92198 0.92074 0.89664 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.59 16 2 O -0.41 -9.12 10.35 -148.98 -1.54 -10.66 16 3 C 0.09 2.05 2.61 30.59 0.08 2.13 16 4 H 0.07 1.38 7.79 -2.39 -0.02 1.36 16 5 C -0.13 -3.18 5.54 30.59 0.17 -3.01 16 6 C -0.11 -2.94 5.92 30.60 0.18 -2.76 16 7 C -0.12 -3.93 4.94 30.59 0.15 -3.78 16 8 C -0.05 -1.38 1.84 -10.78 -0.02 -1.40 16 9 H 0.08 2.02 7.96 -2.39 -0.02 2.00 16 10 C -0.13 -3.49 5.18 29.85 0.15 -3.34 16 11 C 0.52 17.16 6.79 87.66 0.59 17.76 16 12 O -0.57 -22.57 10.93 -3.05 -0.03 -22.61 16 13 N -0.70 -21.45 4.54 -418.07 -1.90 -23.35 16 14 C 0.17 5.61 0.39 4.68 0.00 5.61 16 15 C 0.15 6.49 4.72 86.38 0.41 6.90 16 16 N -0.73 -37.41 5.30 -343.46 -1.82 -39.23 16 17 C -0.24 -13.85 9.99 84.03 0.84 -13.01 16 18 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 19 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 20 N -0.96 -58.08 13.06 21.65 0.28 -57.80 16 21 Si 0.96 47.67 29.55 68.60 2.03 49.70 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 25 C -0.12 -3.27 5.67 32.01 0.18 -3.08 16 26 C -0.11 -2.23 6.80 31.79 0.22 -2.02 16 27 C -0.11 -2.35 6.80 31.32 0.21 -2.14 16 28 C -0.12 -3.34 5.68 31.32 0.18 -3.17 16 29 C -0.10 -2.36 4.86 30.61 0.15 -2.21 16 30 H 0.05 0.66 8.09 -2.38 -0.02 0.64 16 31 H 0.04 0.63 7.87 -2.38 -0.02 0.61 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.49 7.87 -2.38 -0.02 1.47 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 2.18 5.95 -2.39 -0.01 2.16 16 39 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.41 10.30 8.50 -92.70 -0.79 9.51 16 42 H 0.02 0.82 6.48 -2.39 -0.02 0.81 16 43 H 0.01 0.58 8.02 -2.39 -0.02 0.56 16 44 H 0.38 19.89 7.27 -92.71 -0.67 19.22 16 45 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 46 H 0.07 1.97 8.10 -2.39 -0.02 1.95 16 47 H 0.07 2.16 7.97 -2.38 -0.02 2.14 16 48 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 50 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 52 H 0.06 1.78 7.84 -2.39 -0.02 1.76 16 53 H 0.06 1.90 6.63 -2.39 -0.02 1.88 16 54 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 55 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -70.64 417.42 1.60 -69.04 By element: Atomic # 1 Polarization: 44.74 SS G_CDS: -0.60 Total: 44.13 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 5.19 Total: -9.22 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -3.44 Total: -120.37 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -1.57 Total: -33.27 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -70.64 1.60 -69.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732230761.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.311 kcal (2) G-P(sol) polarization free energy of solvation -70.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds